Rroxscaffold_2G00104820
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010813
Physical Location & Seq
Reverse (-)
28116280 .. 28119890
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104820.1

Sequence Viewer

Length: 1113 bp
ATGACTCGGCGCTGTTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCCTCGCGTGGCGGAGGTGGCGGCTCCTCCTCCTGCTCTTCTGGAGCGGTCGGCGGCGGCGGCGGAGGCGTGAAGCTCTTCGGCGTTAGGCTGACGGATGGCTCCTTCATAAAGAAGAGCGCCAGCATGGGCAATTTGTCCACTATGGCCTCGCACTACCAATCCTCGTCTCCCAACCCGGACTCTCCTCCCGGCTACGACCCGCCGCTCCACGACCCGGTTCATGTCCGCGACGGTTACTTGTCCGACGACCCGGGCCATGCCTCCTCCTCCACAAATCGCCGCGGAGATCGTAAAAAAGGAGTTCCATGGACAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTCAAAAATTGGGGAAAGGAGACTGGCGTGGGATAGCGCGAAATTATGTAACGACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCAGAAGTATTTTATCCGGCAGAGTAATTCTACCAGAAGAAAGAGACGCTCCAGTCTCTTTGACATGGCCCCTGACATGGCCATGGATCCACCTCACATGCCAGAAGAACAAGCTTTGCTACCTTCTTGTCAGGAGGAAAGAGAATCTGAAGATTCAAAACCTTCATTAAATCTTTCCCTTGGTTCAGAATGCAGCAGACCTATGGAAAGCACACAAGAAGACAAAGTGATTATAGAACCCGATAATCAGCCGGTAATGGGATTGAATGGGTACCCGAATGGTTACCCGCCAGTTATTCCCGGCTTCATCCCAGCGTATTTGCCTTATCCTTATCCTGTATGGCCAAGTGCAGGTCCTCTGATAATAGAAAACGGAGGTGAGGCTTCTCATTATCCACAGGTCTTAAGGCCAGTTCCTATGCTTCCCAAGGAACCTGTCAACGTTGATGCTCTAGTAGGTATGTCTCAGCTCAGTATAGTAGAGGCCGAGAGTCTCCAAAGCAATCCTTCCCCTCTCTCTCTGACATCATTAGGAGAGCCGTCAAGGCAGTCTGCATTTCACCCAAATGCTCCGGCCAGTGAACCAGACTTGAGCAAGGGCAAGACCAGTGCCATCCAAGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

370

Amino Acids

39.82

Weight (kDa)

6.83

Isoelectric Point (pI)

71.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 5.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 827
Acc65I GGTACC 1 cut(s) 756
AccB1I GGYRCC 1 cut(s) 756
AccBSI CCGCTC 2 cut(s) 101, 262
AccII CGCG 4 cut(s) 61, 285, 339, 439
AclI AACGTT 1 cut(s) 927
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 4 cut(s) 34, 564, 827, 1059
AcuI CTGAAG 1 cut(s) 654
AcvI CACGTG 1 cut(s) 51
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 5 cut(s) 62, 271, 562, 743, 836
AflII CTTAAG 1 cut(s) 889
AgsI TTSAA 3 cut(s) 404, 642, 751
AluBI AGCT 3 cut(s) 130, 599, 955
AluI AGCT 3 cut(s) 130, 599, 955
Alw26I GTCTC 6 cut(s) 228, 414, 523, 545, 954, 983
AlwI GGATC 2 cut(s) 566, 579
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 9 cut(s) 34, 201, 310, 552, 564, 827, 893, 969, 1059
ApeKI GCWGC 2 cut(s) 24, 678
Asp700I GAANNNNTTC 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 756
AspLEI GCGC 3 cut(s) 12, 176, 439
AspS9I GGNCC 3 cut(s) 310, 553, 839
AsuC2I CCSGG 6 cut(s) 233, 246, 272, 308, 309, 786
AsuHPI GGTGA 2 cut(s) 875, 1037
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 2 cut(s) 566, 829
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 756
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 392, 711
BbvI GCAGC 2 cut(s) 36, 690
BccI CCATC 2 cut(s) 146, 1106
BceAI ACGGC 2 cut(s) 49, 1009
BcnI CCSGG 6 cut(s) 233, 246, 272, 308, 309, 786
BcoDI GTCTC 6 cut(s) 228, 414, 523, 545, 954, 983
BfaI CTAG 2 cut(s) 456, 938
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 2 cut(s) 13, 177
BfrI CTTAAG 1 cut(s) 889
BfuAI ACCTGC 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 1030
BisI GCNGC 8 cut(s) 25, 76, 109, 112, 115, 260, 337, 679
BlsI GCNGC 8 cut(s) 26, 77, 110, 113, 116, 261, 338, 680
Bme1390I CCNGG 6 cut(s) 233, 246, 272, 308, 309, 786
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 310, 553, 839
BmiI GGNNCC 6 cut(s) 79, 157, 555, 573, 758, 918
BmrFI CCNGG 6 cut(s) 233, 246, 272, 308, 309, 786
BmsI GCATC 2 cut(s) 388, 922
BpiI GAAGAC 2 cut(s) 392, 711
BpmI CTGGAG 2 cut(s) 117, 520
BpuEI CTTGAG 1 cut(s) 1096
BpuMI CCSGG 6 cut(s) 233, 246, 272, 308, 309, 786
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 6 cut(s) 307, 337, 362, 567, 664, 912
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 271, 562, 743, 836
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 6 cut(s) 428, 537, 776, 896, 1062, 1092
BseDI CCNNGG 6 cut(s) 307, 337, 362, 567, 664, 912
BseGI GGATG 3 cut(s) 157, 792, 1098
BseLI CCNNNNNNNGG 5 cut(s) 62, 271, 562, 743, 836
BseMII CTCAG 3 cut(s) 482, 965, 970
BseNI ACTGG 6 cut(s) 428, 537, 776, 896, 1062, 1092
BseRI GAGGAG 6 cut(s) 70, 73, 231, 310, 313, 389
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 2 cut(s) 36, 690
BseYI CCCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 4 cut(s) 61, 285, 339, 439
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 9 cut(s) 36, 203, 312, 554, 566, 829, 895, 971, 1061
BshNI GGYRCC 1 cut(s) 756
BsiEI CGRYCG 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 8 cut(s) 233, 246, 272, 308, 502, 737, 786, 1058
BslI CCNNNNNNNGG 5 cut(s) 62, 271, 562, 743, 836
BsmAI GTCTC 6 cut(s) 228, 414, 523, 545, 954, 983
BsmBI CGTCTC 2 cut(s) 228, 523
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 9 cut(s) 36, 203, 312, 554, 566, 829, 895, 971, 1061
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 343, 571
Bsp19I CCATGG 2 cut(s) 362, 567
BspANI GGCC 9 cut(s) 36, 203, 312, 554, 566, 829, 895, 971, 1061
BspCNI CTCAG 3 cut(s) 481, 964, 969
BspFNI CGCG 4 cut(s) 61, 285, 339, 439
BspLI GGNNCC 6 cut(s) 79, 157, 555, 573, 758, 918
BspMAI CTGCAG 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 566, 579
BspQI GCTCTTC 3 cut(s) 97, 137, 164
BspT107I GGYRCC 1 cut(s) 756
BspTI CTTAAG 1 cut(s) 889
BsrBI CCGCTC 2 cut(s) 101, 262
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 6 cut(s) 428, 537, 776, 896, 1062, 1092
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 6 cut(s) 307, 337, 362, 567, 664, 912
BssMI GATC 2 cut(s) 343, 571
BssT1I CCWWGG 4 cut(s) 362, 567, 664, 912
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 4 cut(s) 97, 137, 164, 366
BstAFI CTTAAG 1 cut(s) 889
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 178, 478
BstDEI CTNAG 3 cut(s) 468, 951, 956
BstDSI CCRYGG 3 cut(s) 337, 362, 567
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 3 cut(s) 157, 792, 1098
BstFNI CGCG 4 cut(s) 61, 285, 339, 439
BstH2I RGCGCY 2 cut(s) 13, 177
BstHHI GCGC 3 cut(s) 12, 176, 439
BstKTI GATC 2 cut(s) 346, 574
BstMAI GTCTC 6 cut(s) 228, 414, 523, 545, 954, 983
BstMBI GATC 2 cut(s) 343, 571
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 7 cut(s) 33, 72, 114, 120, 482, 1030, 1103
BstNSI RCATGY 1 cut(s) 586
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 6 cut(s) 231, 244, 270, 306, 307, 784
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 4 cut(s) 61, 285, 339, 439
BstV1I GCAGC 2 cut(s) 36, 690
BstV2I GAAGAC 2 cut(s) 392, 711
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 9 cut(s) 36, 203, 312, 554, 566, 829, 895, 971, 1061
BtgI CCRYGG 3 cut(s) 337, 362, 567
BtsCI GGATG 3 cut(s) 157, 792, 1098
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 1069, 1099
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 2 cut(s) 178, 478
CfoI GCGC 3 cut(s) 12, 176, 439
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 310, 553, 839
Cfr42I CCGCGG 1 cut(s) 340
Cfr9I CCCGGG 1 cut(s) 307
CseI GACGC 1 cut(s) 540
Csp6I GTAC 1 cut(s) 757
CviAII CATG 9 cut(s) 181, 278, 314, 363, 482, 550, 562, 568, 583
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 3 cut(s) 468, 951, 956
DpnI GATC 2 cut(s) 345, 573
DpnII GATC 2 cut(s) 343, 571
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 4 cut(s) 34, 564, 827, 1059
Eam1104I CTCTTC 4 cut(s) 97, 137, 164, 366
EarI CTCTTC 4 cut(s) 97, 137, 164, 366
EciI GGCGGA 2 cut(s) 81, 132
Eco130I CCWWGG 4 cut(s) 362, 567, 664, 912
Eco47I GGWCC 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 839
EcoO65I GGTNACC 1 cut(s) 767
EcoT14I CCWWGG 4 cut(s) 362, 567, 664, 912
ErhI CCWWGG 4 cut(s) 362, 567, 664, 912
Esp3I CGTCTC 2 cut(s) 228, 523
FaeI CATG 9 cut(s) 184, 281, 317, 366, 485, 553, 565, 571, 586
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FatI CATG 9 cut(s) 180, 277, 313, 362, 481, 549, 561, 567, 582
FauI CCCGC 3 cut(s) 53, 264, 780
Fnu4HI GCNGC 8 cut(s) 25, 76, 109, 112, 115, 260, 337, 679
FokI GGATG 3 cut(s) 164, 779, 1085
Fsp4HI GCNGC 8 cut(s) 25, 76, 109, 112, 115, 260, 337, 679
FspBI CTAG 2 cut(s) 456, 938
GlaI GCGC 3 cut(s) 11, 175, 438
GluI GCNGC 8 cut(s) 25, 76, 109, 112, 115, 260, 337, 679
GsaI CCCAGC 1 cut(s) 800
GsuI CTGGAG 2 cut(s) 117, 520
HaeII RGCGCY 2 cut(s) 13, 177
HaeIII GGCC 9 cut(s) 36, 203, 312, 554, 566, 829, 895, 971, 1061
HapII CCGG 8 cut(s) 233, 246, 272, 308, 502, 737, 786, 1058
HgaI GACGC 1 cut(s) 540
HhaI GCGC 3 cut(s) 12, 176, 439
Hin1II CATG 9 cut(s) 184, 281, 317, 366, 485, 553, 565, 571, 586
Hin6I GCGC 3 cut(s) 10, 174, 437
HinP1I GCGC 3 cut(s) 10, 174, 437
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 6 cut(s) 4, 236, 460, 629, 638, 976
HpaII CCGG 8 cut(s) 233, 246, 272, 308, 502, 737, 786, 1058
HphI GGTGA 2 cut(s) 875, 1037
Hpy166II GTNNAC 3 cut(s) 195, 925, 1067
Hpy188I TCNGA 6 cut(s) 301, 634, 673, 846, 1008, 1112
Hpy188III TCNNGA 2 cut(s) 96, 617
Hpy8I GTNNAC 3 cut(s) 195, 925, 1067
Hpy99I CGWCG 2 cut(s) 290, 305
HpyAV CCTTC 4 cut(s) 169, 618, 657, 1002
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 50, 927
HpyCH4V TGCA 4 cut(s) 24, 678, 836, 1040
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 72, 114, 120, 482, 1030, 1103
HpyF3I CTNAG 3 cut(s) 468, 951, 956
HpySE526I ACGT 2 cut(s) 50, 927
Hsp92II CATG 9 cut(s) 184, 281, 317, 366, 485, 553, 565, 571, 586
HspAI GCGC 3 cut(s) 10, 174, 437
KpnI GGTACC 1 cut(s) 760
KspI CCGCGG 1 cut(s) 340
Kzo9I GATC 2 cut(s) 343, 571
LguI GCTCTTC 3 cut(s) 97, 137, 164
LmnI GCTCC 7 cut(s) 83, 98, 161, 267, 376, 539, 1060
Lsp1109I GCAGC 2 cut(s) 36, 690
LweI GCATC 2 cut(s) 388, 922
MaeI CTAG 2 cut(s) 456, 938
MaeII ACGT 2 cut(s) 50, 927
MaeIII GTNAC 3 cut(s) 290, 448, 767
MalI GATC 2 cut(s) 345, 573
MbiI CCGCTC 2 cut(s) 101, 262
MboI GATC 2 cut(s) 343, 571
MboII GAAGA 9 cut(s) 84, 124, 181, 383, 392, 534, 602, 647, 716
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 566, 829
MluCI AATT 5 cut(s) 187, 393, 407, 442, 511
MluNI TGGCCA 2 cut(s) 566, 829
MlyI GAGTC 3 cut(s) 230, 454, 985
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 2 cut(s) 566, 829
MroXI GAANNNNTTC 1 cut(s) 131
MscI TGGCCA 2 cut(s) 566, 829
MseI TTAA 3 cut(s) 392, 653, 890
MslI CAYNNNNRTG 2 cut(s) 566, 1050
Msp20I TGGCCA 2 cut(s) 566, 829
MspA1I CMGCKG 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 889
MspI CCGG 8 cut(s) 233, 246, 272, 308, 502, 737, 786, 1058
MspR9I CCNGG 6 cut(s) 233, 246, 272, 308, 309, 786
Mva1269I GAATGC 1 cut(s) 680
MvnI CGCG 4 cut(s) 61, 285, 339, 439
MwoI GCNNNNNNNGC 7 cut(s) 33, 72, 114, 120, 482, 1030, 1103
NciI CCSGG 6 cut(s) 233, 246, 272, 308, 309, 786
NcoI CCATGG 2 cut(s) 362, 567
NdeII GATC 2 cut(s) 343, 571
NlaIII CATG 9 cut(s) 184, 281, 317, 366, 485, 553, 565, 571, 586
NlaIV GGNNCC 6 cut(s) 79, 157, 555, 573, 758, 918
NmeAIII GCCGAG 1 cut(s) 997
NspI RCATGY 1 cut(s) 586
PciSI GCTCTTC 3 cut(s) 97, 137, 164
PctI GAATGC 1 cut(s) 680
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 629, 638
PkrI GCNGC 8 cut(s) 26, 77, 110, 113, 116, 261, 338, 680
PleI GAGTC 3 cut(s) 230, 454, 984
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 3 cut(s) 230, 454, 984
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 839
Psp1406I AACGTT 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 839
PspCI CACGTG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 796
PspN4I GGNNCC 6 cut(s) 79, 157, 555, 573, 758, 918
PspPI GGNCC 3 cut(s) 310, 553, 839
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
RseI CAYNNNNRTG 2 cut(s) 566, 1050
SacII CCGCGG 1 cut(s) 340
SapI GCTCTTC 3 cut(s) 97, 137, 164
SaqAI TTAA 3 cut(s) 392, 653, 890
SatI GCNGC 8 cut(s) 25, 76, 109, 112, 115, 260, 337, 679
Sau3AI GATC 2 cut(s) 343, 571
Sau96I GGNCC 3 cut(s) 310, 553, 839
SchI GAGTC 3 cut(s) 230, 454, 985
ScrFI CCNGG 6 cut(s) 233, 246, 272, 308, 309, 786
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 2 cut(s) 388, 922
SfcI CTRYAG 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 340
SgrBI CCGCGG 1 cut(s) 340
SinI GGWCC 1 cut(s) 839
SmaI CCCGGG 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 566, 1050
SmlI CTYRAG 2 cut(s) 889, 1075
SmoI CTYRAG 2 cut(s) 889, 1075
Sse9I AATT 5 cut(s) 187, 393, 407, 442, 511
SspMI CTAG 2 cut(s) 456, 938
StyD4I CCNGG 6 cut(s) 231, 244, 270, 306, 307, 784
StyI CCWWGG 4 cut(s) 362, 567, 664, 912
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 53, 930
TaqI TCGA 1 cut(s) 382
TasI AATT 5 cut(s) 187, 393, 407, 442, 511
TauI GCSGC 6 cut(s) 78, 111, 114, 117, 262, 339
TfiI GAWTC 2 cut(s) 629, 638
Tru1I TTAA 3 cut(s) 392, 653, 890
Tru9I TTAA 3 cut(s) 392, 653, 890
TscAI CASTG 3 cut(s) 26, 1069, 1099
TseI GCWGC 2 cut(s) 24, 678
TspDTI ATGAA 4 cut(s) 151, 266, 639, 781
TspGWI ACGGA 2 cut(s) 164, 873
TspMI CCCGGG 1 cut(s) 307
TspRI CASTG 3 cut(s) 26, 1069, 1099
Vha464I CTTAAG 1 cut(s) 889
VpaK11BI GGWCC 1 cut(s) 839
XceI RCATGY 1 cut(s) 586
XmaI CCCGGG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 2 cut(s) 456, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.