transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16350 |
| fragaria_vesca | FvH4_6g32340 FvH4_6g32340 FvH4_6g32340 FvH4_6g32340 |
| malus_domestica | MD09G1203200.v1.1 MD17G1184100.v1.1 |
| prunus_persica | Prupe.3G059300_v2.0.a1 |
| pyrus_communis | pycom09g12000 pycom17g19350 |
| rosa_chinensis | RchiOBHm_Chr2g0140461 |
| rosa_laevigata | RLG00000019869 |
| rosa_roxburghii | Rroxscaffold_153G00436730 Rroxscaffold_2G00104820 |
| rosa_rugosa | Rorug02G0363300 |
| rosa_samantha | Rh2AG413600 Rh2BG423800 Rh2CG399900 Rh2DG433500 |
| rosa_wichuraiana | Rw2G033900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 991 |
| Acc36I | ACCTGC | 1 cut(s) | 838 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 388 |
| AccBSI | CCGCTC | 1 cut(s) | 241 |
| AccII | CGCG | 2 cut(s) | 46, 318 |
| AccIII | TCCGGA | 1 cut(s) | 595 |
| AciI | CCGC | 9 cut(s) | 10, 87, 99, 105, 188, 239, 306, 316, 318 |
| AclWI | GGATC | 5 cut(s) | 545, 558, 730, 862, 1057 |
| AcoI | YGGCCR | 2 cut(s) | 543, 791 |
| AcsI | RAATTY | 1 cut(s) | 175 |
| AcuI | CTGAAG | 2 cut(s) | 134, 630 |
| AcvI | CACGTG | 2 cut(s) | 51, 62 |
| AdeI | CACNNNGTG | 1 cut(s) | 800 |
| AfeI | AGCGCT | 1 cut(s) | 163 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 232, 250, 388, 719, 803, 877 |
| AflIII | ACRYGT | 2 cut(s) | 59, 61 |
| AjiI | CACGTC | 1 cut(s) | 259 |
| AjnI | CCWGG | 2 cut(s) | 447, 748 |
| AluBI | AGCT | 6 cut(s) | 118, 231, 614, 651, 764, 919 |
| AluI | AGCT | 6 cut(s) | 118, 231, 614, 651, 764, 919 |
| Alw21I | GWGCWC | 1 cut(s) | 17 |
| Alw26I | GTCTC | 4 cut(s) | 383, 393, 918, 924 |
| AlwI | GGATC | 5 cut(s) | 545, 558, 730, 862, 1057 |
| Ama87I | CYCGRG | 1 cut(s) | 991 |
| Aor13HI | TCCGGA | 1 cut(s) | 595 |
| Aor51HI | AGCGCT | 1 cut(s) | 163 |
| AoxI | GGCC | 8 cut(s) | 109, 288, 543, 791, 806, 834, 857, 943 |
| ApaI | GGGCCC | 1 cut(s) | 810 |
| ApeKI | GCWGC | 3 cut(s) | 24, 102, 614 |
| ApoI | RAATTY | 1 cut(s) | 175 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 119, 731 |
| AspLEI | GCGC | 4 cut(s) | 48, 164, 193, 513 |
| AspS9I | GGNCC | 6 cut(s) | 69, 235, 289, 336, 806, 807 |
| AsuC2I | CCSGG | 3 cut(s) | 218, 251, 287 |
| AsuHPI | GGTGA | 4 cut(s) | 127, 951, 1001, 1040 |
| AvaI | CYCGRG | 1 cut(s) | 991 |
| AvaII | GGWCC | 3 cut(s) | 69, 235, 336 |
| BaeGI | GKGCMC | 3 cut(s) | 39, 56, 810 |
| BalI | TGGCCA | 2 cut(s) | 545, 793 |
| BamHI | GGATCC | 1 cut(s) | 550 |
| BanII | GRGCYC | 2 cut(s) | 810, 990 |
| BbrPI | CACGTG | 2 cut(s) | 51, 62 |
| Bbv12I | GWGCWC | 1 cut(s) | 17 |
| BbvCI | CCTCAGC | 1 cut(s) | 647 |
| BbvI | GCAGC | 3 cut(s) | 36, 89, 601 |
| BccI | CCATC | 2 cut(s) | 134, 661 |
| BciT130I | CCWGG | 2 cut(s) | 449, 750 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BcnI | CCSGG | 3 cut(s) | 218, 251, 287 |
| BcoDI | GTCTC | 4 cut(s) | 383, 393, 918, 924 |
| BfaI | CTAG | 5 cut(s) | 165, 183, 435, 926, 980 |
| BfmI | CTRYAG | 1 cut(s) | 22 |
| BfoI | RGCGCY | 2 cut(s) | 165, 514 |
| BfuAI | ACCTGC | 1 cut(s) | 838 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 994 |
| BisI | GCNGC | 6 cut(s) | 25, 100, 103, 189, 316, 615 |
| BlsI | GCNGC | 6 cut(s) | 26, 101, 104, 190, 317, 616 |
| Bme1390I | CCNGG | 5 cut(s) | 218, 251, 287, 449, 750 |
| Bme18I | GGWCC | 3 cut(s) | 69, 235, 336 |
| BmeT110I | CYCGRG | 1 cut(s) | 991 |
| BmgBI | CACGTC | 1 cut(s) | 259 |
| BmgT120I | GGNCC | 6 cut(s) | 69, 235, 289, 336, 806, 807 |
| BmiI | GGNNCC | 9 cut(s) | 70, 237, 337, 338, 534, 552, 808, 882, 954 |
| BmrFI | CCNGG | 5 cut(s) | 218, 251, 287, 449, 750 |
| BmsI | GCATC | 2 cut(s) | 367, 886 |
| BoxI | GACNNNNGTC | 1 cut(s) | 62 |
| BpmI | CTGGAG | 3 cut(s) | 365, 499, 1005 |
| Bpu10I | CCTNAGC | 1 cut(s) | 647 |
| BpuEI | CTTGAG | 1 cut(s) | 1060 |
| BpuMI | CCSGG | 3 cut(s) | 218, 251, 287 |
| BsaAI | YACGTR | 2 cut(s) | 51, 62 |
| BsaBI | GATNNNNATC | 1 cut(s) | 866 |
| BsaI | GGTCTC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 4 cut(s) | 316, 341, 447, 546 |
| BsaWI | WCCGGW | 1 cut(s) | 595 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 185, 206, 215, 236, 424, 454 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 232, 250, 388, 719, 803, 877 |
| Bse118I | RCCGGY | 2 cut(s) | 89, 1025 |
| Bse1I | ACTGG | 3 cut(s) | 407, 785, 906 |
| Bse8I | GATNNNNATC | 1 cut(s) | 866 |
| BseAI | TCCGGA | 1 cut(s) | 595 |
| BseBI | CCWGG | 2 cut(s) | 449, 750 |
| BseDI | CCNNGG | 4 cut(s) | 316, 341, 447, 546 |
| BseGI | GGATG | 1 cut(s) | 80 |
| BseJI | GATNNNNATC | 1 cut(s) | 866 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 232, 250, 388, 719, 803, 877 |
| BseMII | CTCAG | 4 cut(s) | 661, 666, 929, 934 |
| BseNI | ACTGG | 3 cut(s) | 407, 785, 906 |
| BseRI | GAGGAG | 7 cut(s) | 64, 67, 193, 289, 292, 365, 368 |
| BseSI | GKGCMC | 3 cut(s) | 39, 56, 810 |
| BseXI | GCAGC | 3 cut(s) | 36, 89, 601 |
| BseYI | CCCAGC | 1 cut(s) | 760 |
| BsgI | GTGCAG | 1 cut(s) | 822 |
| Bsh1236I | CGCG | 2 cut(s) | 46, 318 |
| BshFI | GGCC | 8 cut(s) | 111, 290, 545, 793, 808, 836, 859, 945 |
| BsiHKAI | GWGCWC | 1 cut(s) | 17 |
| BsiHKCI | CYCGRG | 1 cut(s) | 991 |
| BsiSI | CCGG | 7 cut(s) | 90, 218, 251, 287, 596, 1026, 1034 |
| BslFI | GGGAC | 2 cut(s) | 245, 349 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 232, 250, 388, 719, 803, 877 |
| BsmAI | GTCTC | 4 cut(s) | 383, 393, 918, 924 |
| BsmFI | GGGAC | 2 cut(s) | 245, 349 |
| BsmI | GAATGC | 1 cut(s) | 662 |
| BsnI | GGCC | 8 cut(s) | 111, 290, 545, 793, 808, 836, 859, 945 |
| Bso31I | GGTCTC | 1 cut(s) | 383 |
| BsoBI | CYCGRG | 1 cut(s) | 991 |
| Bsp120I | GGGCCC | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 5 cut(s) | 17, 39, 56, 810, 990 |
| Bsp13I | TCCGGA | 1 cut(s) | 595 |
| Bsp143I | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| Bsp19I | CCATGG | 2 cut(s) | 341, 546 |
| BspACI | CCGC | 9 cut(s) | 10, 87, 99, 105, 188, 239, 306, 316, 318 |
| BspANI | GGCC | 8 cut(s) | 111, 290, 545, 793, 808, 836, 859, 945 |
| BspCNI | CTCAG | 4 cut(s) | 660, 665, 928, 933 |
| BspEI | TCCGGA | 1 cut(s) | 595 |
| BspFNI | CGCG | 2 cut(s) | 46, 318 |
| BspHI | TCATGA | 1 cut(s) | 706 |
| BspLI | GGNNCC | 9 cut(s) | 70, 237, 337, 338, 534, 552, 808, 882, 954 |
| BspMAI | CTGCAG | 1 cut(s) | 26 |
| BspMI | ACCTGC | 1 cut(s) | 838 |
| BspPI | GGATC | 5 cut(s) | 545, 558, 730, 862, 1057 |
| BspQI | GCTCTTC | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 1 cut(s) | 383 |
| BsrBI | CCGCTC | 1 cut(s) | 241 |
| BsrFI | RCCGGY | 2 cut(s) | 89, 1025 |
| BsrI | ACTGG | 3 cut(s) | 407, 785, 906 |
| BssAI | RCCGGY | 2 cut(s) | 89, 1025 |
| BssECI | CCNNGG | 4 cut(s) | 316, 341, 447, 546 |
| BssMI | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| BssT1I | CCWWGG | 2 cut(s) | 341, 546 |
| Bst2UI | CCWGG | 2 cut(s) | 449, 750 |
| Bst4CI | ACNGT | 1 cut(s) | 731 |
| Bst6I | CTCTTC | 1 cut(s) | 152 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 461 |
| BstBAI | YACGTR | 2 cut(s) | 51, 62 |
| BstC8I | GCNNGC | 2 cut(s) | 17, 457 |
| BstDEI | CTNAG | 4 cut(s) | 647, 652, 915, 920 |
| BstDSI | CCRYGG | 3 cut(s) | 316, 341, 546 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 875 |
| BstF5I | GGATG | 1 cut(s) | 80 |
| BstFNI | CGCG | 2 cut(s) | 46, 318 |
| BstH2I | RGCGCY | 2 cut(s) | 165, 514 |
| BstHHI | GCGC | 4 cut(s) | 48, 164, 193, 513 |
| BstKTI | GATC | 7 cut(s) | 150, 325, 553, 706, 725, 870, 1065 |
| BstMAI | GTCTC | 4 cut(s) | 383, 393, 918, 924 |
| BstMBI | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 21, 43, 108, 461, 657, 994, 1067 |
| BstNI | CCWGG | 2 cut(s) | 449, 750 |
| BstNSI | RCATGY | 1 cut(s) | 913 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 62 |
| BstSCI | CCNGG | 5 cut(s) | 216, 249, 285, 447, 748 |
| BstSFI | CTRYAG | 1 cut(s) | 22 |
| BstSLI | GKGCMC | 3 cut(s) | 39, 56, 810 |
| BstUI | CGCG | 2 cut(s) | 46, 318 |
| BstV1I | GCAGC | 3 cut(s) | 36, 89, 601 |
| BstX2I | RGATCY | 1 cut(s) | 550 |
| BstYI | RGATCY | 1 cut(s) | 550 |
| BsuRI | GGCC | 8 cut(s) | 111, 290, 545, 793, 808, 836, 859, 945 |
| BtgI | CCRYGG | 3 cut(s) | 316, 341, 546 |
| BtgZI | GCGATG | 1 cut(s) | 192 |
| BtrI | CACGTC | 1 cut(s) | 259 |
| BtsCI | GGATG | 1 cut(s) | 80 |
| BtsI | GCAGTG | 2 cut(s) | 19, 1063 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 899, 1063 |
| BveI | ACCTGC | 1 cut(s) | 838 |
| Cac8I | GCNNGC | 2 cut(s) | 17, 457 |
| CciI | TCATGA | 1 cut(s) | 706 |
| CfoI | GCGC | 4 cut(s) | 48, 164, 193, 513 |
| Cfr10I | RCCGGY | 2 cut(s) | 89, 1025 |
| Cfr13I | GGNCC | 6 cut(s) | 69, 235, 289, 336, 806, 807 |
| Cfr42I | CCGCGG | 1 cut(s) | 319 |
| CviAII | CATG | 9 cut(s) | 293, 342, 461, 529, 547, 680, 707, 811, 910 |
| DdeI | CTNAG | 4 cut(s) | 647, 652, 915, 920 |
| DpnI | GATC | 7 cut(s) | 149, 324, 552, 705, 724, 869, 1064 |
| DpnII | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| DraIII | CACNNNGTG | 1 cut(s) | 800 |
| EaeI | YGGCCR | 2 cut(s) | 543, 791 |
| Eam1104I | CTCTTC | 1 cut(s) | 152 |
| EarI | CTCTTC | 1 cut(s) | 152 |
| EciI | GGCGGA | 2 cut(s) | 76, 295 |
| Eco130I | CCWWGG | 2 cut(s) | 341, 546 |
| Eco147I | AGGCCT | 2 cut(s) | 111, 836 |
| Eco24I | GRGCYC | 2 cut(s) | 810, 990 |
| Eco31I | GGTCTC | 1 cut(s) | 383 |
| Eco47I | GGWCC | 3 cut(s) | 69, 235, 336 |
| Eco47III | AGCGCT | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 2 cut(s) | 134, 630 |
| Eco72I | CACGTG | 2 cut(s) | 51, 62 |
| Eco88I | CYCGRG | 1 cut(s) | 991 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 875 |
| EcoO109I | RGGNCCY | 3 cut(s) | 69, 336, 806 |
| EcoRII | CCWGG | 2 cut(s) | 447, 748 |
| EcoT14I | CCWWGG | 2 cut(s) | 341, 546 |
| EcoT38I | GRGCYC | 2 cut(s) | 810, 990 |
| ErhI | CCWWGG | 2 cut(s) | 341, 546 |
| FaeI | CATG | 9 cut(s) | 296, 345, 464, 532, 550, 683, 710, 814, 913 |
| FaqI | GGGAC | 2 cut(s) | 245, 349 |
| FatI | CATG | 9 cut(s) | 292, 341, 460, 528, 546, 679, 706, 810, 909 |
| FauI | CCCGC | 1 cut(s) | 246 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 6 cut(s) | 25, 100, 103, 189, 316, 615 |
| FokI | GGATG | 1 cut(s) | 67 |
| FriOI | GRGCYC | 2 cut(s) | 810, 990 |
| Fsp4HI | GCNGC | 6 cut(s) | 25, 100, 103, 189, 316, 615 |
| FspBI | CTAG | 5 cut(s) | 165, 183, 435, 926, 980 |
| GlaI | GCGC | 4 cut(s) | 47, 163, 192, 512 |
| GluI | GCNGC | 6 cut(s) | 25, 100, 103, 189, 316, 615 |
| GsaI | CCCAGC | 1 cut(s) | 764 |
| GsuI | CTGGAG | 3 cut(s) | 365, 499, 1005 |
| HaeII | RGCGCY | 2 cut(s) | 165, 514 |
| HaeIII | GGCC | 8 cut(s) | 111, 290, 545, 793, 808, 836, 859, 945 |
| HapII | CCGG | 7 cut(s) | 90, 218, 251, 287, 596, 1026, 1034 |
| HhaI | GCGC | 4 cut(s) | 48, 164, 193, 513 |
| Hin1II | CATG | 9 cut(s) | 296, 345, 464, 532, 550, 683, 710, 814, 913 |
| Hin6I | GCGC | 4 cut(s) | 46, 162, 191, 511 |
| HinP1I | GCGC | 4 cut(s) | 46, 162, 191, 511 |
| HinfI | GANTC | 6 cut(s) | 4, 221, 439, 605, 745, 862 |
| HpaII | CCGG | 7 cut(s) | 90, 218, 251, 287, 596, 1026, 1034 |
| HphI | GGTGA | 4 cut(s) | 127, 951, 1001, 1040 |
| Hpy166II | GTNNAC | 2 cut(s) | 256, 623 |
| Hpy188I | TCNGA | 6 cut(s) | 235, 280, 610, 655, 867, 1076 |
| Hpy188III | TCNNGA | 5 cut(s) | 154, 382, 536, 596, 707 |
| Hpy8I | GTNNAC | 2 cut(s) | 256, 623 |
| Hpy99I | CGWCG | 1 cut(s) | 284 |
| HpyAV | CCTTC | 6 cut(s) | 260, 388, 597, 639, 881, 966 |
| HpyCH4III | ACNGT | 1 cut(s) | 731 |
| HpyCH4IV | ACGT | 3 cut(s) | 50, 61, 258 |
| HpyCH4V | TGCA | 5 cut(s) | 24, 617, 660, 803, 899 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 21, 43, 108, 461, 657, 994, 1067 |
| HpyF3I | CTNAG | 4 cut(s) | 647, 652, 915, 920 |
| HpySE526I | ACGT | 3 cut(s) | 50, 61, 258 |
| Hsp92II | CATG | 9 cut(s) | 296, 345, 464, 532, 550, 683, 710, 814, 913 |
| HspAI | GCGC | 4 cut(s) | 46, 162, 191, 511 |
| KflI | GGGWCCC | 1 cut(s) | 336 |
| Kpn2I | TCCGGA | 1 cut(s) | 595 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| KspI | CCGCGG | 1 cut(s) | 319 |
| Kzo9I | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| LguI | GCTCTTC | 1 cut(s) | 152 |
| LmnI | GCTCC | 6 cut(s) | 246, 355, 518, 880, 952, 1024 |
| Lsp1109I | GCAGC | 3 cut(s) | 36, 89, 601 |
| LweI | GCATC | 2 cut(s) | 367, 886 |
| MaeI | CTAG | 5 cut(s) | 165, 183, 435, 926, 980 |
| MaeII | ACGT | 3 cut(s) | 50, 61, 258 |
| MaeIII | GTNAC | 2 cut(s) | 269, 427 |
| MalI | GATC | 7 cut(s) | 149, 324, 552, 705, 724, 869, 1064 |
| MbiI | CCGCTC | 1 cut(s) | 241 |
| MboI | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| MboII | GAAGA | 7 cut(s) | 169, 513, 581, 611, 614, 695, 748 |
| MflI | RGATCY | 1 cut(s) | 550 |
| MhlI | GDGCHC | 5 cut(s) | 17, 39, 56, 810, 990 |
| MlsI | TGGCCA | 2 cut(s) | 545, 793 |
| MluCI | AATT | 5 cut(s) | 175, 372, 386, 421, 818 |
| MluNI | TGGCCA | 2 cut(s) | 545, 793 |
| MlyI | GAGTC | 2 cut(s) | 215, 433 |
| MmeI | TCCRAC | 1 cut(s) | 303 |
| Mox20I | TGGCCA | 2 cut(s) | 545, 793 |
| MroI | TCCGGA | 1 cut(s) | 595 |
| MroXI | GAANNNNTTC | 2 cut(s) | 119, 731 |
| MscI | TGGCCA | 2 cut(s) | 545, 793 |
| MseI | TTAA | 5 cut(s) | 371, 635, 821, 854, 971 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1014 |
| Msp20I | TGGCCA | 2 cut(s) | 545, 793 |
| MspA1I | CMGCKG | 1 cut(s) | 318 |
| MspI | CCGG | 7 cut(s) | 90, 218, 251, 287, 596, 1026, 1034 |
| MspR9I | CCNGG | 5 cut(s) | 218, 251, 287, 449, 750 |
| Mva1269I | GAATGC | 1 cut(s) | 662 |
| MvaI | CCWGG | 2 cut(s) | 449, 750 |
| MvnI | CGCG | 2 cut(s) | 46, 318 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 21, 43, 108, 461, 657, 994, 1067 |
| NciI | CCSGG | 3 cut(s) | 218, 251, 287 |
| NcoI | CCATGG | 2 cut(s) | 341, 546 |
| NdeII | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| NlaIII | CATG | 9 cut(s) | 296, 345, 464, 532, 550, 683, 710, 814, 913 |
| NlaIV | GGNNCC | 9 cut(s) | 70, 237, 337, 338, 534, 552, 808, 882, 954 |
| NspI | RCATGY | 1 cut(s) | 913 |
| PaeR7I | CTCGAG | 1 cut(s) | 991 |
| PagI | TCATGA | 1 cut(s) | 706 |
| PceI | AGGCCT | 2 cut(s) | 111, 836 |
| PciSI | GCTCTTC | 1 cut(s) | 152 |
| PctI | GAATGC | 1 cut(s) | 662 |
| PdmI | GAANNNNTTC | 2 cut(s) | 119, 731 |
| PfeI | GAWTC | 3 cut(s) | 605, 745, 862 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 388 |
| PkrI | GCNGC | 6 cut(s) | 26, 101, 104, 190, 317, 616 |
| PleI | GAGTC | 2 cut(s) | 215, 433 |
| PmaCI | CACGTG | 2 cut(s) | 51, 62 |
| PmlI | CACGTG | 2 cut(s) | 51, 62 |
| PpsI | GAGTC | 2 cut(s) | 215, 433 |
| Ppu21I | YACGTR | 2 cut(s) | 51, 62 |
| PpuMI | RGGWCCY | 2 cut(s) | 69, 336 |
| PshAI | GACNNNNGTC | 1 cut(s) | 62 |
| Psp5II | RGGWCCY | 2 cut(s) | 69, 336 |
| Psp6I | CCWGG | 2 cut(s) | 447, 748 |
| PspCI | CACGTG | 2 cut(s) | 51, 62 |
| PspFI | CCCAGC | 1 cut(s) | 760 |
| PspGI | CCWGG | 2 cut(s) | 447, 748 |
| PspN4I | GGNNCC | 9 cut(s) | 70, 237, 337, 338, 534, 552, 808, 882, 954 |
| PspOMI | GGGCCC | 1 cut(s) | 806 |
| PspPI | GGNCC | 6 cut(s) | 69, 235, 289, 336, 806, 807 |
| PspPPI | RGGWCCY | 2 cut(s) | 69, 336 |
| PspXI | VCTCGAGB | 1 cut(s) | 991 |
| PstI | CTGCAG | 1 cut(s) | 26 |
| PsuI | RGATCY | 1 cut(s) | 550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1014 |
| SacII | CCGCGG | 1 cut(s) | 319 |
| SapI | GCTCTTC | 1 cut(s) | 152 |
| SaqAI | TTAA | 5 cut(s) | 371, 635, 821, 854, 971 |
| SatI | GCNGC | 6 cut(s) | 25, 100, 103, 189, 316, 615 |
| Sau3AI | GATC | 7 cut(s) | 147, 322, 550, 703, 722, 867, 1062 |
| Sau96I | GGNCC | 6 cut(s) | 69, 235, 289, 336, 806, 807 |
| SchI | GAGTC | 2 cut(s) | 215, 433 |
| ScrFI | CCNGG | 5 cut(s) | 218, 251, 287, 449, 750 |
| SduI | GDGCHC | 5 cut(s) | 17, 39, 56, 810, 990 |
| SfaNI | GCATC | 2 cut(s) | 367, 886 |
| SfcI | CTRYAG | 1 cut(s) | 22 |
| Sfr274I | CTCGAG | 1 cut(s) | 991 |
| Sfr303I | CCGCGG | 1 cut(s) | 319 |
| SgrAI | CRCCGGYG | 1 cut(s) | 89 |
| SgrBI | CCGCGG | 1 cut(s) | 319 |
| SinI | GGWCC | 3 cut(s) | 69, 235, 336 |
| SlaI | CTCGAG | 1 cut(s) | 991 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1014 |
| SmlI | CTYRAG | 2 cut(s) | 991, 1039 |
| SmoI | CTYRAG | 2 cut(s) | 991, 1039 |
| Sse9I | AATT | 5 cut(s) | 175, 372, 386, 421, 818 |
| SseBI | AGGCCT | 2 cut(s) | 111, 836 |
| SsiI | CCGC | 9 cut(s) | 10, 87, 99, 105, 188, 239, 306, 316, 318 |
| SspMI | CTAG | 5 cut(s) | 165, 183, 435, 926, 980 |
| StuI | AGGCCT | 2 cut(s) | 111, 836 |
| StyD4I | CCNGG | 5 cut(s) | 216, 249, 285, 447, 748 |
| StyI | CCWWGG | 2 cut(s) | 341, 546 |
| TaaI | ACNGT | 1 cut(s) | 731 |
| TaiI | ACGT | 3 cut(s) | 53, 64, 261 |
| TaqI | TCGA | 6 cut(s) | 146, 361, 481, 525, 725, 992 |
| TasI | AATT | 5 cut(s) | 175, 372, 386, 421, 818 |
| TauI | GCSGC | 3 cut(s) | 102, 191, 318 |
| TfiI | GAWTC | 3 cut(s) | 605, 745, 862 |
| Tru1I | TTAA | 5 cut(s) | 371, 635, 821, 854, 971 |
| Tru9I | TTAA | 5 cut(s) | 371, 635, 821, 854, 971 |
| TscAI | CASTG | 3 cut(s) | 26, 906, 1063 |
| TseI | GCWGC | 3 cut(s) | 24, 102, 614 |
| TspDTI | ATGAA | 2 cut(s) | 621, 696 |
| TspRI | CASTG | 3 cut(s) | 26, 906, 1063 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 388 |
| VpaK11BI | GGWCC | 3 cut(s) | 69, 235, 336 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 875 |
| XapI | RAATTY | 1 cut(s) | 175 |
| XceI | RCATGY | 1 cut(s) | 913 |
| XhoI | CTCGAG | 1 cut(s) | 991 |
| XmnI | GAANNNNTTC | 2 cut(s) | 119, 731 |
| XspI | CTAG | 5 cut(s) | 165, 183, 435, 926, 980 |