pycom09g12000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010813
Physical Location & Seq
Reverse (-)
10294366 .. 10297251
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12000.3

Sequence Viewer

Length: 702 bp
ATGATACCTCTTCTTCCTCTCCGTCTGTCTCTCCCTCGCCCGCTGATCTTTGACCCGGCCCGAGTCGCGATCGCCGAACCGGCCGAGTCAGGAAAAATGACTCGGCGTTGCTCGCACTGCAGCAACAACGGGCACAACTCGCGCACGTGCCCGACGCGTGTCGGGTCCTCCTCCTCCTCCCCCTCCTTAGGAGGCGGCGTGAAGCTGTTCGGCGTGAGGCTCACCGATGGCTCGATCATTAAGAAGAGCGCCAGCATGGGAAATTTATCCAGTGCGGCGGCGCACTACCATTCCTCGTCGCCGAACCCGGACTCCCCGAGCTCCGACCCGCTCCATGACCCGGTTCACGTTCCCGACGGTTACTTATCCGACGACCCCGCCCACGCTTCCTCCTCCGTCAATCGCCGCGGCGATCGTAAAAAGGGAACGCCATGGACAGAAGACGAGCATCGAATGTTCTTGATTGGTCTCCAGAAATTGGGGAAGGGAGACTGGCGTGGGATAGCACGGAGTTATGTGACTACTAGGACTGCCACCCAGGTGGCAAGCCATGCCCAGAAGTATTTTATCCGACAGAGTAATGCTACACGAAGAAAGAGGCGGTCCAGCCTATTCGACATGGTTCCCGATATGGTTTATGAATGCACCTCCCTTGCCAGAAGAACAAATTTTTCTGCCTTCTTCTTGGGAAGGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

234

Amino Acids

25.61

Weight (kDa)

10.38

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 331
AccII CGCG 4 cut(s) 68, 142, 157, 408
AciI CCGC 9 cut(s) 41, 195, 275, 278, 329, 378, 406, 408, 601
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 262, 667
AcvI CACGTG 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 188, 340, 478
AflIII ACRYGT 1 cut(s) 155
AjnI CCWGG 1 cut(s) 537
AleI CACNNNNGTG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 2 cut(s) 205, 321
AluI AGCT 2 cut(s) 205, 321
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 3 cut(s) 33, 473, 483
Ama87I CYCGRG 2 cut(s) 60, 316
AoxI GGCC 2 cut(s) 57, 81
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 2 cut(s) 262, 667
AsiSI GCGATCGC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 144, 251, 283
AspS9I GGNCC 3 cut(s) 58, 165, 603
AsuC2I CCSGG 3 cut(s) 56, 308, 341
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 2 cut(s) 60, 316
AvaII GGWCC 2 cut(s) 165, 603
AxyI CCTNAGG 1 cut(s) 187
BaeGI GKGCMC 2 cut(s) 135, 152
BanII GRGCYC 1 cut(s) 323
BbrPI CACGTG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 539
BcnI CCSGG 3 cut(s) 56, 308, 341
BcoDI GTCTC 3 cut(s) 33, 473, 483
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 6 cut(s) 121, 196, 276, 279, 406, 409
BlsI GCNGC 6 cut(s) 122, 197, 277, 280, 407, 410
Bme1390I CCNGG 4 cut(s) 56, 308, 341, 539
Bme18I GGWCC 2 cut(s) 165, 603
BmeT110I CYCGRG 2 cut(s) 60, 316
BmgT120I GGNCC 3 cut(s) 58, 165, 603
BmiI GGNNCC 2 cut(s) 166, 624
BmrFI CCNGG 4 cut(s) 56, 308, 341, 539
BmsI GCATC 1 cut(s) 457
BoxI GACNNNNGTC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 455
BpuMI CCSGG 3 cut(s) 56, 308, 341
BsaAI YACGTR 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 406, 431, 537
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 296, 326, 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 340, 478
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 270, 497
Bse21I CCTNAGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 406, 431, 537
BseLI CCNNNNNNNGG 3 cut(s) 188, 340, 478
BseNI ACTGG 2 cut(s) 270, 497
BseRI GAGGAG 4 cut(s) 160, 163, 166, 382
BseSI GKGCMC 2 cut(s) 135, 152
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 4 cut(s) 68, 142, 157, 408
Bsh1285I CGRYCG 3 cut(s) 72, 84, 415
BshFI GGCC 2 cut(s) 59, 83
BsiEI CGRYCG 3 cut(s) 72, 84, 415
BsiHKAI GWGCWC 1 cut(s) 323
BsiHKCI CYCGRG 2 cut(s) 60, 316
BsiSI CCGG 4 cut(s) 56, 80, 308, 341
BslI CCNNNNNNNGG 3 cut(s) 188, 340, 478
BsmAI GTCTC 3 cut(s) 33, 473, 483
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 2 cut(s) 59, 83
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 2 cut(s) 60, 316
Bsp1286I GDGCHC 3 cut(s) 135, 152, 323
Bsp143I GATC 4 cut(s) 45, 69, 234, 412
Bsp19I CCATGG 1 cut(s) 431
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 9 cut(s) 41, 195, 275, 278, 329, 378, 406, 408, 601
BspANI GGCC 2 cut(s) 59, 83
BspFNI CGCG 4 cut(s) 68, 142, 157, 408
BspLI GGNNCC 2 cut(s) 166, 624
BspMAI CTGCAG 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 270, 497
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 406, 431, 537
BssMI GATC 4 cut(s) 45, 69, 234, 412
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 15, 239
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 4 cut(s) 41, 113, 253, 547
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 2 cut(s) 406, 431
BstFNI CGCG 4 cut(s) 68, 142, 157, 408
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 3 cut(s) 144, 251, 283
BstKTI GATC 4 cut(s) 48, 72, 237, 415
BstMAI GTCTC 3 cut(s) 33, 473, 483
BstMBI GATC 4 cut(s) 45, 69, 234, 412
BstMCI CGRYCG 3 cut(s) 72, 84, 415
BstMWI GCNNNNNNNGC 6 cut(s) 65, 80, 112, 117, 139, 551
BstNI CCWGG 1 cut(s) 539
BstPAI GACNNNNGTC 1 cut(s) 158
BstSCI CCNGG 4 cut(s) 54, 306, 339, 537
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 2 cut(s) 135, 152
BstUI CGCG 4 cut(s) 68, 142, 157, 408
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 541
BstZI CGGCCG 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 187
BsuRI GGCC 2 cut(s) 59, 83
BtgI CCRYGG 2 cut(s) 406, 431
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 277
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 4 cut(s) 41, 113, 253, 547
CfoI GCGC 3 cut(s) 144, 251, 283
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 58, 165, 603
Cfr42I CCGCGG 1 cut(s) 409
CseI GACGC 1 cut(s) 163
CviAII CATG 5 cut(s) 256, 335, 432, 551, 619
CviJI RGCY 8 cut(s) 59, 83, 205, 220, 231, 321, 549, 609
CviKI_1 RGCY 8 cut(s) 59, 83, 205, 220, 231, 321, 549, 609
DdeI CTNAG 1 cut(s) 187
DpnI GATC 4 cut(s) 47, 71, 236, 414
DpnII GATC 4 cut(s) 45, 69, 234, 412
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 15, 239
EarI CTCTTC 2 cut(s) 15, 239
Ecl136II GAGCTC 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 165, 603
Eco52I CGGCCG 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 321
Eco72I CACGTG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 60, 316
EcoICRI GAGCTC 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 259, 338, 435, 554, 622
FaiI YATR 8 cut(s) 257, 336, 433, 516, 552, 620, 632, 639
FatI CATG 5 cut(s) 255, 334, 431, 550, 618
FauI CCCGC 3 cut(s) 48, 336, 385
Fnu4HI GCNGC 6 cut(s) 121, 196, 276, 279, 406, 409
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 6 cut(s) 121, 196, 276, 279, 406, 409
FspBI CTAG 1 cut(s) 525
GlaI GCGC 3 cut(s) 143, 250, 282
GluI GCNGC 6 cut(s) 121, 196, 276, 279, 406, 409
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 2 cut(s) 59, 83
HapII CCGG 4 cut(s) 56, 80, 308, 341
HgaI GACGC 1 cut(s) 163
HhaI GCGC 3 cut(s) 144, 251, 283
Hin1II CATG 5 cut(s) 259, 338, 435, 554, 622
Hin6I GCGC 3 cut(s) 142, 249, 281
HinP1I GCGC 3 cut(s) 142, 249, 281
HinfI GANTC 5 cut(s) 63, 86, 100, 311, 696
HpaII CCGG 4 cut(s) 56, 80, 308, 341
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 325, 370, 572, 701
Hpy188III TCNNGA 6 cut(s) 67, 90, 353, 460, 472, 626
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 4 cut(s) 157, 301, 359, 374
HpyAV CCTTC 3 cut(s) 478, 684, 688
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 2 cut(s) 146, 348
HpyCH4V TGCA 2 cut(s) 120, 645
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 80, 112, 117, 139, 551
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 2 cut(s) 146, 348
Hsp92II CATG 5 cut(s) 259, 338, 435, 554, 622
HspAI GCGC 3 cut(s) 142, 249, 281
KspI CCGCGG 1 cut(s) 409
Kzo9I GATC 4 cut(s) 45, 69, 234, 412
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 326, 336
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 146, 348
MaeIII GTNAC 2 cut(s) 359, 517
MalI GATC 4 cut(s) 47, 71, 236, 414
MbiI CCGCTC 1 cut(s) 331
MboI GATC 4 cut(s) 45, 69, 234, 412
MboII GAAGA 6 cut(s) 5, 256, 452, 603, 672, 673
MhlI GDGCHC 3 cut(s) 135, 152, 323
MluCI AATT 3 cut(s) 262, 476, 667
MluI ACGCGT 1 cut(s) 155
MlyI GAGTC 4 cut(s) 72, 94, 95, 305
MmeI TCCRAC 3 cut(s) 348, 393, 595
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 2 cut(s) 43, 408
MspI CCGG 4 cut(s) 56, 80, 308, 341
MspR9I CCNGG 4 cut(s) 56, 308, 341, 539
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 4 cut(s) 68, 142, 157, 408
MwoI GCNNNNNNNGC 6 cut(s) 65, 80, 112, 117, 139, 551
NciI CCSGG 3 cut(s) 56, 308, 341
NcoI CCATGG 1 cut(s) 431
NdeII GATC 4 cut(s) 45, 69, 234, 412
NlaIII CATG 5 cut(s) 259, 338, 435, 554, 622
NlaIV GGNNCC 2 cut(s) 166, 624
NmeAIII GCCGAG 2 cut(s) 82, 109
NmuCI GTSAC 1 cut(s) 517
NruI TCGCGA 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 647
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 696
PflMI CCANNNNNTGG 1 cut(s) 478
PkrI GCNGC 6 cut(s) 122, 197, 277, 280, 407, 410
Ple19I CGATCG 2 cut(s) 72, 415
PleI GAGTC 4 cut(s) 71, 94, 94, 305
PmaCI CACGTG 1 cut(s) 147
PmlI CACGTG 1 cut(s) 147
PpsI GAGTC 4 cut(s) 71, 94, 94, 305
Ppu21I YACGTR 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 165
PshAI GACNNNNGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 537
PspCI CACGTG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 166, 624
PspPI GGNCC 3 cut(s) 58, 165, 603
PspPPI RGGWCCY 1 cut(s) 165
PstI CTGCAG 1 cut(s) 122
PvuI CGATCG 2 cut(s) 72, 415
RgaI GCGATCGC 1 cut(s) 72
RruI TCGCGA 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 323
SacII CCGCGG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 6 cut(s) 121, 196, 276, 279, 406, 409
Sau3AI GATC 4 cut(s) 45, 69, 234, 412
Sau96I GGNCC 3 cut(s) 58, 165, 603
SchI GAGTC 4 cut(s) 72, 94, 95, 305
ScrFI CCNGG 4 cut(s) 56, 308, 341, 539
SduI GDGCHC 3 cut(s) 135, 152, 323
SetI ASST 7 cut(s) 10, 149, 207, 323, 351, 543, 650
SfaAI GCGATCGC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 409
SgfI GCGATCGC 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 409
SinI GGWCC 2 cut(s) 165, 603
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 3 cut(s) 262, 476, 667
SsiI CCGC 9 cut(s) 41, 195, 275, 278, 329, 378, 406, 408, 601
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 54, 306, 339, 537
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 2 cut(s) 149, 351
TaqI TCGA 3 cut(s) 233, 451, 615
TasI AATT 3 cut(s) 262, 476, 667
TauI GCSGC 5 cut(s) 198, 278, 281, 408, 411
TfiI GAWTC 1 cut(s) 696
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 122, 277
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 3 cut(s) 11, 385, 523
TspRI CASTG 2 cut(s) 122, 277
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 165, 603
XapI RAATTY 2 cut(s) 262, 667
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.