Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012820

Physical Location & Seq

Genomic Coordinates Reverse (-)

5776264 .. 5778052

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAAACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTGGTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCCGAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTGGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCTTCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

333

Amino Acids

36.7

Weight (kDa)

6.14

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	100 - 327	5.7e-59	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16920 AT3G16920
fragaria_vesca	FvH4_4g19370
malus_domestica	MD16G1158100.v1.1
prunus_persica	Prupe.1G122900_v2.0.a1
pyrus_communis	pycom13g13460 pycom16g13300
rosa_chinensis	RchiOBHm_Chr4g0424411
rosa_laevigata	RLG00000007477
rosa_multiflora	Rmu_sc0003567.1_g000015
rosa_roxburghii	Rroxscaffold_5G00366350
rosa_rugosa	Rorug04G0197600
rosa_samantha	Rh4AG279500 Rh4BG258800 Rh4BG284900 Rh4CG270100 Rh4DG253300
rosa_wichuraiana	Rw4G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	940
AciI	CCGC	7 cut(s)	14, 308, 414, 435, 668, 679, 831
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	5 cut(s)	320, 340, 419, 526, 542
AfiI	CCNNNNNNNGG	3 cut(s)	414, 785, 986
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	5 cut(s)	59, 105, 359, 607, 665
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	5 cut(s)	446, 487, 557, 914, 931
AluI	AGCT	5 cut(s)	446, 487, 557, 914, 931
Alw26I	GTCTC	2 cut(s)	212, 541
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	311, 377, 764
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	718, 941
AspS9I	GGNCC	3 cut(s)	177, 437, 917
AsuC2I	CCSGG	2 cut(s)	595, 780
AsuHPI	GGTGA	2 cut(s)	133, 359
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	3 cut(s)	177, 437, 917
BalI	TGGCCA	1 cut(s)	390
BauI	CACGAG	1 cut(s)	923
BbvI	GCAGC	3 cut(s)	298, 364, 751
BccI	CCATC	2 cut(s)	153, 168
BceAI	ACGGC	2 cut(s)	257, 826
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	531
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	595, 780
BcoDI	GTCTC	2 cut(s)	212, 541
BisI	GCNGC	5 cut(s)	309, 312, 378, 669, 765
BlsI	GCNGC	5 cut(s)	310, 313, 379, 670, 766
Bme1390I	CCNGG	3 cut(s)	531, 595, 780
Bme18I	GGWCC	3 cut(s)	177, 437, 917
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	3 cut(s)	177, 437, 917
BmiI	GGNNCC	3 cut(s)	67, 790, 991
BmrFI	CCNGG	3 cut(s)	531, 595, 780
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	595, 780
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	544, 594, 779
BsaWI	WCCGGW	2 cut(s)	62, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 785, 986
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	260, 575
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	544, 594, 779
BseGI	GGATG	5 cut(s)	164, 179, 369, 625, 690
BseLI	CCNNNNNNNGG	3 cut(s)	414, 785, 986
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	260, 575
BseRI	GAGGAG	3 cut(s)	567, 958, 966
BseXI	GCAGC	3 cut(s)	298, 364, 751
Bsh1285I	CGRYCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	390
BshTI	ACCGGT	1 cut(s)	562
BsiEI	CGRYCG	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	4 cut(s)	63, 563, 594, 779
BslI	CCNNNNNNNGG	3 cut(s)	414, 785, 986
BsmAI	GTCTC	2 cut(s)	212, 541
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
BspACI	CCGC	7 cut(s)	14, 308, 414, 435, 668, 679, 831
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	67, 790, 991
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	260, 575
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	3 cut(s)	544, 594, 779
BssMI	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
BssNI	GRCGYC	1 cut(s)	689
BssSI	CACGAG	1 cut(s)	923
Bst2BI	CACGAG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	40, 257, 548, 711
BstACI	GRCGYC	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	246, 620
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	5 cut(s)	164, 179, 369, 625, 690
BstHHI	GCGC	2 cut(s)	718, 941
BstKTI	GATC	6 cut(s)	296, 484, 616, 817, 889, 946
BstMAI	GTCTC	2 cut(s)	212, 541
BstMBI	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 665
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	3 cut(s)	529, 593, 778
BstV1I	GCAGC	3 cut(s)	298, 364, 751
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	2 cut(s)	329, 447
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	5 cut(s)	164, 179, 369, 625, 690
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	267, 759
CfoI	GCGC	2 cut(s)	718, 941
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	177, 437, 917
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	5 cut(s)	319, 339, 418, 525, 541
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	2 cut(s)	411, 936
CviQI	GTAC	5 cut(s)	319, 339, 418, 525, 541
DdeI	CTNAG	2 cut(s)	246, 620
DpnI	GATC	6 cut(s)	295, 483, 615, 816, 888, 945
DpnII	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
EaeI	YGGCCR	1 cut(s)	388
EciI	GGCGGA	1 cut(s)	450
Eco47I	GGWCC	3 cut(s)	177, 437, 917
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	2 cut(s)	414, 939
FaiI	YATR	8 cut(s)	148, 198, 223, 412, 517, 585, 797, 937
FatI	CATG	2 cut(s)	410, 935
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	5 cut(s)	309, 312, 378, 669, 765
FokI	GGATG	5 cut(s)	171, 186, 376, 612, 697
Fsp4HI	GCNGC	5 cut(s)	309, 312, 378, 669, 765
FspI	TGCGCA	1 cut(s)	940
GlaI	GCGC	2 cut(s)	717, 940
GluI	GCNGC	5 cut(s)	309, 312, 378, 669, 765
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	4 cut(s)	63, 563, 594, 779
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	2 cut(s)	718, 941
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	2 cut(s)	414, 939
Hin6I	GCGC	2 cut(s)	716, 939
HinP1I	GCGC	2 cut(s)	716, 939
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	5 cut(s)	86, 235, 475, 622, 834
HpaII	CCGG	4 cut(s)	63, 563, 594, 779
HphI	GGTGA	2 cut(s)	133, 359
Hpy166II	GTNNAC	2 cut(s)	76, 568
Hpy188I	TCNGA	6 cut(s)	91, 181, 208, 734, 891, 981
Hpy188III	TCNNGA	9 cut(s)	232, 479, 629, 638, 640, 884, 923, 947, 999
Hpy8I	GTNNAC	2 cut(s)	76, 568
Hpy99I	CGWCG	3 cut(s)	278, 715, 734
HpyAV	CCTTC	2 cut(s)	105, 361
HpyCH4III	ACNGT	4 cut(s)	40, 257, 548, 711
HpyCH4IV	ACGT	3 cut(s)	393, 653, 801
HpyCH4V	TGCA	6 cut(s)	44, 168, 192, 428, 767, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 665
HpyF3I	CTNAG	2 cut(s)	246, 620
HpySE526I	ACGT	3 cut(s)	393, 653, 801
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	2 cut(s)	414, 939
HspAI	GCGC	2 cut(s)	716, 939
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
LmnI	GCTCC	4 cut(s)	399, 554, 788, 979
Lsp1109I	GCAGC	3 cut(s)	298, 364, 751
MaeII	ACGT	3 cut(s)	393, 653, 801
MaeIII	GTNAC	2 cut(s)	251, 458
MalI	GATC	6 cut(s)	295, 483, 615, 816, 888, 945
MboI	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
MboII	GAAGA	7 cut(s)	95, 136, 709, 920, 951, 954, 987
MflI	RGATCY	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	5 cut(s)	143, 227, 509, 574, 580
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	484, 631
MmeI	TCCRAC	2 cut(s)	712, 880
MnlI	CCTC	9 cut(s)	126, 336, 418, 545, 592, 930, 976, 979, 987
Mox20I	TGGCCA	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	831
MspI	CCGG	4 cut(s)	63, 563, 594, 779
MspR9I	CCNGG	3 cut(s)	531, 595, 780
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	656, 665
NciI	CCSGG	2 cut(s)	595, 780
NdeII	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
NlaIII	CATG	2 cut(s)	414, 939
NlaIV	GGNNCC	3 cut(s)	67, 790, 991
NmeAIII	GCCGAG	1 cut(s)	340
NsbI	TGCGCA	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 726
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	86, 235, 834
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	5 cut(s)	310, 313, 379, 670, 766
PleI	GAGTC	2 cut(s)	483, 630
PpsI	GAGTC	2 cut(s)	483, 630
Psp1406I	AACGTT	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	67, 790, 991
PspPI	GGNCC	3 cut(s)	177, 437, 917
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	5 cut(s)	320, 340, 419, 526, 542
RsaNI	GTAC	5 cut(s)	319, 339, 418, 525, 541
SatI	GCNGC	5 cut(s)	309, 312, 378, 669, 765
Sau3AI	GATC	6 cut(s)	293, 481, 613, 814, 886, 943
Sau96I	GGNCC	3 cut(s)	177, 437, 917
SchI	GAGTC	2 cut(s)	484, 631
ScrFI	CCNGG	3 cut(s)	531, 595, 780
Sfr274I	CTCGAG	1 cut(s)	638
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	3 cut(s)	177, 437, 917
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	143, 227, 509, 574, 580
SsiI	CCGC	7 cut(s)	14, 308, 414, 435, 668, 679, 831
StyD4I	CCNGG	3 cut(s)	529, 593, 778
TaaI	ACNGT	4 cut(s)	40, 257, 548, 711
TaiI	ACGT	3 cut(s)	396, 656, 804
TaqI	TCGA	6 cut(s)	8, 98, 231, 550, 639, 837
TasI	AATT	5 cut(s)	143, 227, 509, 574, 580
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	311, 671
TfiI	GAWTC	3 cut(s)	86, 235, 834
TscAI	CASTG	2 cut(s)	267, 766
TseI	GCWGC	3 cut(s)	311, 377, 764
TspDTI	ATGAA	3 cut(s)	289, 380, 866
TspRI	CASTG	2 cut(s)	267, 766
VpaK11BI	GGWCC	3 cut(s)	177, 437, 917
XhoI	CTCGAG	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.