Prupe.1G122900_v2.0.a1

Chitinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012820
Physical Location & Seq
Forward (+)
9637562 .. 9639683
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G122900.1

Sequence Viewer

Length: 975 bp
ATGGAGGCAAAATGGTTGGTGTTTTTCTCAATGGCAGCTACAATGCTGGCCCTTCATGTTGTGGATGGTCAAGAAGAGTCGTCTGTGAAGCCATTGGTGAAGATAGTGAAGGGCAAGAAGCTGTGTGACAAGGGGTGGGAGTGTAAGGGCTGGTCTGTATATTGTTGTAACCAGACCATTTCTGATTATTTTCAATCTTACCAATTTGAGACCCTCTTCTCTAAGCGTAACGCGCCCGTGGCGCATGCAGTGGGCTTCTGGGACTACCATTCTTTCATTACTGCAGCCGCTGAGCACCAGCCTCATGGCTTTGGTACTACAGGAGGCAAGCTCCAAGGAATGAAGGAAGTTGCTGCTTTTCTTGGCCATGTTGGCAGCAAAACTTCATGTGGGTATGGGGTAGCCACAGGAGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAAGAGAGCCCTAGCCAGTTCTACTGTGATGACTATTACAAATACACTTATCCCTGCGCTCCTGGAGCTTCATACCATGGCCGTGGTGCCTTGCCACTGTACTGGAACTATAACTATGGAGAAACAGGGGATGCCCTGAAAGTGGACTTGTTGAACCATCCAGAGTACATAGAACAAAATGCAACCCTAGCCTTCCAGGCTGCAATCTGGAGATGGATGAACCCAGTGAAGAAGCACCTTCCTTCAGCCCATGATGTCTTTGTTGGGAAATGGAAGCCATCTAAGAACGACACTTTGGCCAAGCGAACTCCTGGGTTTGGCACCACCATCAATCTGCTTTATGGGGACCAAGTTTGTGGTCAAGGTGACGTTGACTCCATGGACAACATTGTCTCCCATTACTTGTATTATCTTGATCTTATTGGAGTTGGCAGAGAAGAGGCAGGCCCTCATGAAGTGCTTAGCTGTGCTGAGCAGAAAGCTTTTGATCCTTCATCTTCTTCTTCTTCCTCTTCATCTTCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

325

Amino Acids

35.76

Weight (kDa)

6.17

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16920 AT3G16920
fragaria_vesca FvH4_4g19370
malus_domestica MD16G1158100.v1.1
prunus_persica Prupe.1G122900_v2.0.a1
pyrus_communis pycom13g13460 pycom16g13300
rosa_chinensis RchiOBHm_Chr4g0424411
rosa_laevigata RLG00000007477
rosa_multiflora Rmu_sc0003567.1_g000015
rosa_roxburghii Rroxscaffold_5G00366350
rosa_rugosa Rorug04G0197600
rosa_samantha Rh4AG279500 Rh4BG258800 Rh4BG284900 Rh4CG270100 Rh4DG253300
rosa_wichuraiana Rw4G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
AccB1I GGYRCC 2 cut(s) 530, 764
AccII CGCG 1 cut(s) 233
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 926
AcoI YGGCCR 3 cut(s) 364, 523, 741
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 3 cut(s) 316, 545, 611
AfiI CCNNNNNNNGG 2 cut(s) 586, 761
AgsI TTSAA 2 cut(s) 194, 598
AjnI CCWGG 3 cut(s) 505, 639, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 6 cut(s) 38, 121, 331, 512, 909, 926
AluI AGCT 6 cut(s) 38, 121, 331, 512, 909, 926
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 203, 841
AlwI GGATC 1 cut(s) 926
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 5 cut(s) 48, 364, 523, 741, 889
ApeKI GCWGC 5 cut(s) 35, 284, 353, 375, 644
AspLEI GCGC 3 cut(s) 235, 244, 503
AspS9I GGNCC 4 cut(s) 49, 413, 790, 890
AsuHPI GGTGA 2 cut(s) 109, 821
AvaII GGWCC 2 cut(s) 413, 790
BalI TGGCCA 2 cut(s) 366, 743
BanI GGYRCC 2 cut(s) 530, 764
BanII GRGCYC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 5 cut(s) 47, 296, 340, 387, 631
BccI CCATC 5 cut(s) 59, 609, 651, 730, 779
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 3 cut(s) 507, 641, 756
BcoDI GTCTC 2 cut(s) 203, 841
BfaI CTAG 2 cut(s) 456, 632
BfmI CTRYAG 2 cut(s) 282, 318
BglI GCCNNNNNGGC 2 cut(s) 372, 641
BisI GCNGC 6 cut(s) 36, 285, 288, 354, 376, 645
BlpI GCTNAGC 3 cut(s) 291, 905, 915
BlsI GCNGC 6 cut(s) 37, 286, 289, 355, 377, 646
Bme1390I CCNGG 3 cut(s) 507, 641, 756
Bme18I GGWCC 2 cut(s) 413, 790
BmgT120I GGNCC 4 cut(s) 49, 413, 790, 890
BmiI GGNNCC 3 cut(s) 532, 766, 791
BmrFI CCNGG 3 cut(s) 507, 641, 756
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 662
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 2 cut(s) 528, 673
Bpu1102I GCTNAGC 3 cut(s) 291, 905, 915
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 6 cut(s) 237, 334, 520, 526, 755, 822
BsaXI ACNNNNNCTCC 4 cut(s) 803, 821, 833, 851
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 761
Bse1I ACTGG 3 cut(s) 460, 551, 668
BseBI CCWGG 3 cut(s) 507, 641, 756
BseDI CCNNGG 6 cut(s) 237, 334, 520, 526, 755, 822
BseGI GGATG 4 cut(s) 70, 580, 601, 666
BseLI CCNNNNNNNGG 2 cut(s) 586, 761
BseMII CTCAG 2 cut(s) 282, 906
BseNI ACTGG 3 cut(s) 460, 551, 668
BseXI GCAGC 5 cut(s) 47, 296, 340, 387, 631
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 5 cut(s) 50, 366, 525, 743, 891
BshNI GGYRCC 2 cut(s) 530, 764
BsiHKAI GWGCWC 1 cut(s) 297
BslFI GGGAC 2 cut(s) 275, 803
BslI CCNNNNNNNGG 2 cut(s) 586, 761
BsmAI GTCTC 2 cut(s) 203, 841
BsmFI GGGAC 2 cut(s) 275, 803
BsnI GGCC 5 cut(s) 50, 366, 525, 743, 891
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 297, 455
Bsp143I GATC 2 cut(s) 859, 931
Bsp1720I GCTNAGC 3 cut(s) 291, 905, 915
Bsp19I CCATGG 2 cut(s) 520, 822
BspACI CCGC 1 cut(s) 288
BspANI GGCC 5 cut(s) 50, 366, 525, 743, 891
BspCNI CTCAG 2 cut(s) 283, 907
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 3 cut(s) 532, 766, 791
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 926
BspT107I GGYRCC 2 cut(s) 530, 764
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 460, 551, 668
BssECI CCNNGG 6 cut(s) 237, 334, 520, 526, 755, 822
BssMI GATC 2 cut(s) 859, 931
BssT1I CCWWGG 3 cut(s) 334, 520, 822
Bst2UI CCWGG 3 cut(s) 507, 641, 756
Bst4CI ACNGT 2 cut(s) 470, 543
Bst6I CTCTTC 5 cut(s) 69, 221, 441, 876, 961
BstC8I GCNNGC 4 cut(s) 48, 246, 329, 889
BstDEI CTNAG 5 cut(s) 222, 291, 726, 905, 915
BstDSI CCRYGG 4 cut(s) 237, 520, 526, 822
BstF5I GGATG 4 cut(s) 70, 580, 601, 666
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 3 cut(s) 235, 244, 503
BstKTI GATC 2 cut(s) 862, 934
BstMAI GTCTC 2 cut(s) 203, 841
BstMBI GATC 2 cut(s) 859, 931
BstMWI GCNNNNNNNGC 7 cut(s) 232, 239, 241, 372, 509, 632, 641
BstNI CCWGG 3 cut(s) 507, 641, 756
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 505, 639, 754
BstSFI CTRYAG 2 cut(s) 282, 318
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 5 cut(s) 47, 296, 340, 387, 631
BstXI CCANNNNNNTGG 5 cut(s) 305, 423, 527, 546, 800
BsuRI GGCC 5 cut(s) 50, 366, 525, 743, 891
BtgI CCRYGG 4 cut(s) 237, 520, 526, 822
BtsCI GGATG 4 cut(s) 70, 580, 601, 666
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 255, 539, 675
Cac8I GCNNGC 4 cut(s) 48, 246, 329, 889
CaiI CAGNNNCTG 1 cut(s) 290
CciI TCATGA 1 cut(s) 895
CfoI GCGC 3 cut(s) 235, 244, 503
Cfr13I GGNCC 4 cut(s) 49, 413, 790, 890
Csp6I GTAC 3 cut(s) 315, 544, 610
CviAII CATG 9 cut(s) 56, 245, 305, 368, 387, 521, 695, 823, 896
CviQI GTAC 3 cut(s) 315, 544, 610
DdeI CTNAG 5 cut(s) 222, 291, 726, 905, 915
DpnI GATC 2 cut(s) 861, 933
DpnII GATC 2 cut(s) 859, 931
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 3 cut(s) 364, 523, 741
Eam1104I CTCTTC 5 cut(s) 69, 221, 441, 876, 961
EarI CTCTTC 5 cut(s) 69, 221, 441, 876, 961
Eco130I CCWWGG 3 cut(s) 334, 520, 822
Eco24I GRGCYC 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 413, 790
Eco57I CTGAAG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 3 cut(s) 505, 639, 754
EcoT14I CCWWGG 3 cut(s) 334, 520, 822
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 3 cut(s) 334, 520, 822
FaeI CATG 9 cut(s) 59, 248, 308, 371, 390, 524, 698, 826, 899
FaqI GGGAC 2 cut(s) 275, 803
FatI CATG 9 cut(s) 55, 244, 304, 367, 386, 520, 694, 822, 895
Fnu4HI GCNGC 6 cut(s) 36, 285, 288, 354, 376, 645
FokI GGATG 4 cut(s) 77, 587, 588, 673
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 6 cut(s) 36, 285, 288, 354, 376, 645
FspBI CTAG 2 cut(s) 456, 632
GlaI GCGC 3 cut(s) 234, 243, 502
GluI GCNGC 6 cut(s) 36, 285, 288, 354, 376, 645
GsuI CTGGAG 2 cut(s) 528, 673
HaeIII GGCC 5 cut(s) 50, 366, 525, 743, 891
HhaI GCGC 3 cut(s) 235, 244, 503
Hin1II CATG 9 cut(s) 59, 248, 308, 371, 390, 524, 698, 826, 899
Hin6I GCGC 3 cut(s) 233, 242, 501
HinP1I GCGC 3 cut(s) 233, 242, 501
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 2 cut(s) 77, 818
HphI GGTGA 2 cut(s) 109, 821
Hpy166II GTNNAC 2 cut(s) 589, 817
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 6 cut(s) 71, 605, 652, 857, 896, 972
Hpy8I GTNNAC 2 cut(s) 589, 817
HpyAV CCTTC 7 cut(s) 62, 103, 337, 646, 692, 696, 945
HpyCH4III ACNGT 2 cut(s) 470, 543
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 4 cut(s) 248, 284, 626, 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 232, 239, 241, 372, 509, 632, 641
HpyF3I CTNAG 5 cut(s) 222, 291, 726, 905, 915
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 9 cut(s) 59, 248, 308, 371, 390, 524, 698, 826, 899
HspAI GCGC 3 cut(s) 233, 242, 501
Kzo9I GATC 2 cut(s) 859, 931
LmnI GCTCC 3 cut(s) 336, 508, 509
Lsp1109I GCAGC 5 cut(s) 47, 296, 340, 387, 631
LweI GCATC 1 cut(s) 565
MaeI CTAG 2 cut(s) 456, 632
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 4 cut(s) 125, 167, 227, 809
MalI GATC 2 cut(s) 861, 933
MboI GATC 2 cut(s) 859, 931
MhlI GDGCHC 2 cut(s) 297, 455
MlsI TGGCCA 2 cut(s) 366, 743
MluCI AATT 1 cut(s) 203
MluNI TGGCCA 2 cut(s) 366, 743
MlyI GAGTC 2 cut(s) 86, 812
MnlI CCTC 7 cut(s) 224, 312, 317, 404, 877, 903, 964
Mox20I TGGCCA 2 cut(s) 366, 743
MscI TGGCCA 2 cut(s) 366, 743
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 2 cut(s) 366, 743
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 3 cut(s) 507, 641, 756
MvaI CCWGG 3 cut(s) 507, 641, 756
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 7 cut(s) 232, 239, 241, 372, 509, 632, 641
NcoI CCATGG 2 cut(s) 520, 822
NdeII GATC 2 cut(s) 859, 931
NlaIII CATG 9 cut(s) 59, 248, 308, 371, 390, 524, 698, 826, 899
NlaIV GGNNCC 3 cut(s) 532, 766, 791
NmuCI GTSAC 2 cut(s) 125, 809
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 1 cut(s) 895
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 6 cut(s) 37, 286, 289, 355, 377, 646
PleI GAGTC 2 cut(s) 85, 812
PpsI GAGTC 2 cut(s) 85, 812
Psp6I CCWGG 3 cut(s) 505, 639, 754
PspGI CCWGG 3 cut(s) 505, 639, 754
PspN4I GGNNCC 3 cut(s) 532, 766, 791
PspPI GGNCC 4 cut(s) 49, 413, 790, 890
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 290
RsaI GTAC 3 cut(s) 316, 545, 611
RsaNI GTAC 3 cut(s) 315, 544, 610
RseI CAYNNNNRTG 1 cut(s) 525
SatI GCNGC 6 cut(s) 36, 285, 288, 354, 376, 645
Sau3AI GATC 2 cut(s) 859, 931
Sau96I GGNCC 4 cut(s) 49, 413, 790, 890
SchI GAGTC 2 cut(s) 86, 812
ScrFI CCNGG 3 cut(s) 507, 641, 756
SduI GDGCHC 2 cut(s) 297, 455
SetI ASST 9 cut(s) 40, 123, 333, 514, 684, 811, 816, 911, 928
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 2 cut(s) 282, 318
SinI GGWCC 2 cut(s) 413, 790
SmiMI CAYNNNNRTG 1 cut(s) 525
SphI GCATGC 1 cut(s) 248
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 456, 632
StyD4I CCNGG 3 cut(s) 505, 639, 754
StyI CCWWGG 3 cut(s) 334, 520, 822
TaaI ACNGT 2 cut(s) 470, 543
TaiI ACGT 1 cut(s) 816
TasI AATT 1 cut(s) 203
TatI WGTACW 2 cut(s) 543, 609
TauI GCSGC 1 cut(s) 290
TscAI CASTG 3 cut(s) 255, 546, 675
TseFI GTSAC 2 cut(s) 125, 809
TseI GCWGC 5 cut(s) 35, 284, 353, 375, 644
Tsp45I GTSAC 2 cut(s) 125, 809
TspRI CASTG 3 cut(s) 255, 546, 675
VpaK11BI GGWCC 2 cut(s) 413, 790
XceI RCATGY 1 cut(s) 248
XspI CTAG 2 cut(s) 456, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.