FvH4_4g19370

Chitinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012820
Physical Location & Seq
Reverse (-)
23039926 .. 23042026
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19370.t1

Sequence Viewer

Length: 972 bp
ATGCAGGCCAAGTGGATTCTTCTGCTTTTCTCAATCATCCTCGTAGTGCAAAATGTGAACGGTGAAGATGAGTCGTTATCATCGTCTGTGAAGCCATTGGTGAAGATTGTAAAGGGCAAGAAGCTATGTGACAAGGGTTGGGAGTGCAAGGGATGGTCTGCTTATTGTTGTAACCATACTATTTCAGACTACTTTCAGTCTTACCAATTTGAGGACCTTTTCTCTAAGCGCAACTCGCCTGTGGCGCATGCAGTCGATTTCTGGGACTACCATTCTTTCATTACTGCTGCGGCTGGGTACCAGCCTCATGGCTTTGGTACCACTGGAGGCAAGCTCCAGGGGATGAAAGAAGTTGCAGCTTTCCTTGGTCATGTTGGCAGCAAAACTTCATGTGGATATGGGGTAGCTACAGGAGGACCATTGGCTTGGGGTCTTTGCTACAACAAGGAGATGAGTCCTAACCAGTTGTATTGTGACGATTATTTCAAATACACGTATCCTTGTGCTCCTGGAGCTTCATACCACGGCCGTGGTGCCTTGCCACTATACTGGAACTACAACTATGGAGAAACAGGAGAAGCCCTGAAGGTGGACTTGTTGAACCATCCAGAATACATAGAACAGAATGCTACTCTGGCCTTTCAGGCTGCAATTTGGAGGTGGATGACTCCAGTGAAGAAGAACGTTCCTTCAGCCCATGATGTCTTTGTTGGGAAATGGAAACCTACCAAGAATGACACATTGGCCAAAAGGGTTCCTGGATTTGGCACAACCATGAATGTTCTCTATGGGGAGCAAACTTGTGGTCAAGGTGATGTTGACTCCATGAACAACATTGTCTCGCATTACCTGTATTACCTTGATCTTATTGGTGTTGGCCGCGAAGAGGCAGGTCCTCATGATGTGCTCAACTGCGCTGAGCAAGAAGCTTTCGAGCGTTCCTCTTCTTCTTCATCATCTTCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

324

Amino Acids

35.77

Weight (kDa)

6.2

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 69 - 295 6.7e-61 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16920 AT3G16920
fragaria_vesca FvH4_4g19370
malus_domestica MD16G1158100.v1.1
prunus_persica Prupe.1G122900_v2.0.a1
pyrus_communis pycom13g13460 pycom16g13300
rosa_chinensis RchiOBHm_Chr4g0424411
rosa_laevigata RLG00000007477
rosa_multiflora Rmu_sc0003567.1_g000015
rosa_roxburghii Rroxscaffold_5G00366350
rosa_rugosa Rorug04G0197600
rosa_samantha Rh4AG279500 Rh4BG258800 Rh4BG284900 Rh4CG270100 Rh4DG253300
rosa_wichuraiana Rw4G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 881
Acc65I GGTACC 2 cut(s) 297, 317
AccB1I GGYRCC 3 cut(s) 297, 317, 533
AccII CGCG 1 cut(s) 882
AciI CCGC 2 cut(s) 290, 880
AclI AACGTT 1 cut(s) 684
AcoI YGGCCR 3 cut(s) 526, 744, 877
AcuI CTGAAG 2 cut(s) 605, 675
AfaI GTAC 2 cut(s) 299, 319
AfiI CCNNNNNNNGG 4 cut(s) 211, 589, 764, 886
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 2 cut(s) 487, 601
AjnI CCWGG 3 cut(s) 336, 508, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 6 cut(s) 124, 334, 359, 407, 515, 929
AluI AGCT 6 cut(s) 124, 334, 359, 407, 515, 929
Alw21I GWGCWC 2 cut(s) 508, 909
Alw26I GTCTC 1 cut(s) 844
AoxI GGCC 5 cut(s) 6, 526, 636, 744, 877
ApeKI GCWGC 4 cut(s) 287, 356, 378, 647
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
Asp718I GGTACC 2 cut(s) 297, 317
AspLEI GCGC 3 cut(s) 231, 247, 917
AspS9I GGNCC 3 cut(s) 214, 416, 893
AsuHPI GGTGA 3 cut(s) 74, 112, 824
AvaII GGWCC 3 cut(s) 214, 416, 893
BalI TGGCCA 1 cut(s) 746
BanI GGYRCC 3 cut(s) 297, 317, 533
Bbv12I GWGCWC 2 cut(s) 508, 909
BbvI GCAGC 4 cut(s) 274, 368, 390, 634
BccI CCATC 2 cut(s) 147, 612
BceAI ACGGC 2 cut(s) 513, 541
BciT130I CCWGG 3 cut(s) 338, 510, 759
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 881
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 6 cut(s) 288, 291, 357, 379, 648, 880
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 6 cut(s) 289, 292, 358, 380, 649, 881
Bme1390I CCNGG 3 cut(s) 338, 510, 759
Bme18I GGWCC 3 cut(s) 214, 416, 893
BmgT120I GGNCC 3 cut(s) 214, 416, 893
BmiI GGNNCC 4 cut(s) 299, 319, 535, 756
BmrFI CCNGG 3 cut(s) 338, 510, 759
BplI GAGNNNNNCTC 4 cut(s) 318, 350, 926, 958
BpmI CTGGAG 4 cut(s) 320, 345, 531, 654
Bpu1102I GCTNAGC 1 cut(s) 918
BsaAI YACGTR 1 cut(s) 495
BsaJI CCNNGG 4 cut(s) 337, 364, 523, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 589, 764, 886
Bse1I ACTGG 4 cut(s) 328, 463, 554, 671
BseBI CCWGG 3 cut(s) 338, 510, 759
BseDI CCNNGG 4 cut(s) 337, 364, 523, 529
BseGI GGATG 5 cut(s) 36, 158, 348, 604, 669
BseLI CCNNNNNNNGG 4 cut(s) 211, 589, 764, 886
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 4 cut(s) 328, 463, 554, 671
BseX3I CGGCCG 1 cut(s) 526
BseXI GCAGC 4 cut(s) 274, 368, 390, 634
BseYI CCCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 882
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 5 cut(s) 8, 528, 638, 746, 879
BshNI GGYRCC 3 cut(s) 297, 317, 533
BsiEI CGRYCG 1 cut(s) 529
BsiHKAI GWGCWC 2 cut(s) 508, 909
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 4 cut(s) 211, 589, 764, 886
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 5 cut(s) 8, 528, 638, 746, 879
Bsp1286I GDGCHC 2 cut(s) 508, 909
Bsp143I GATC 1 cut(s) 862
Bsp1720I GCTNAGC 1 cut(s) 918
BspACI CCGC 2 cut(s) 290, 880
BspANI GGCC 5 cut(s) 8, 528, 638, 746, 879
BspCNI CTCAG 1 cut(s) 910
BspFNI CGCG 1 cut(s) 882
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 4 cut(s) 299, 319, 535, 756
BspMI ACCTGC 1 cut(s) 881
BspT107I GGYRCC 3 cut(s) 297, 317, 533
BsrI ACTGG 4 cut(s) 328, 463, 554, 671
BssECI CCNNGG 4 cut(s) 337, 364, 523, 529
BssMI GATC 1 cut(s) 862
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 3 cut(s) 338, 510, 759
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 879, 949
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 6, 249, 332
BstDEI CTNAG 2 cut(s) 225, 918
BstDSI CCRYGG 2 cut(s) 523, 529
BstF5I GGATG 5 cut(s) 36, 158, 348, 604, 669
BstFNI CGCG 1 cut(s) 882
BstHHI GCGC 3 cut(s) 231, 247, 917
BstKTI GATC 1 cut(s) 865
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 1 cut(s) 862
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 5 cut(s) 235, 244, 512, 635, 644
BstNI CCWGG 3 cut(s) 338, 510, 759
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 336, 508, 757
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 4 cut(s) 274, 368, 390, 634
BstXI CCANNNNNNTGG 4 cut(s) 308, 426, 530, 549
BstZI CGGCCG 1 cut(s) 526
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 5 cut(s) 8, 528, 638, 746, 879
BtgI CCRYGG 2 cut(s) 523, 529
BtsCI GGATG 5 cut(s) 36, 158, 348, 604, 669
BtsIMutI CAGTG 2 cut(s) 321, 678
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 3 cut(s) 6, 249, 332
CciI TCATGA 1 cut(s) 898
CfoI GCGC 3 cut(s) 231, 247, 917
Cfr13I GGNCC 3 cut(s) 214, 416, 893
Csp6I GTAC 2 cut(s) 298, 318
CviAII CATG 8 cut(s) 248, 308, 371, 390, 698, 775, 826, 899
CviQI GTAC 2 cut(s) 298, 318
DdeI CTNAG 2 cut(s) 225, 918
DpnI GATC 1 cut(s) 864
DpnII GATC 1 cut(s) 862
EaeI YGGCCR 3 cut(s) 526, 744, 877
EagI CGGCCG 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 879, 949
EarI CTCTTC 2 cut(s) 879, 949
EclXI CGGCCG 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 364
Eco47I GGWCC 3 cut(s) 214, 416, 893
Eco52I CGGCCG 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 605, 675
EcoO109I RGGNCCY 2 cut(s) 214, 893
EcoRII CCWGG 3 cut(s) 336, 508, 757
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 8 cut(s) 251, 311, 374, 393, 701, 778, 829, 902
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 1 cut(s) 278
FatI CATG 8 cut(s) 247, 307, 370, 389, 697, 774, 825, 898
Fnu4HI GCNGC 6 cut(s) 288, 291, 357, 379, 648, 880
FokI GGATG 5 cut(s) 23, 165, 355, 591, 676
Fsp4HI GCNGC 6 cut(s) 288, 291, 357, 379, 648, 880
GlaI GCGC 3 cut(s) 230, 246, 916
GluI GCNGC 6 cut(s) 288, 291, 357, 379, 648, 880
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 4 cut(s) 320, 345, 531, 654
HaeIII GGCC 5 cut(s) 8, 528, 638, 746, 879
HhaI GCGC 3 cut(s) 231, 247, 917
Hin1II CATG 8 cut(s) 251, 311, 374, 393, 701, 778, 829, 902
Hin6I GCGC 3 cut(s) 229, 245, 915
HinP1I GCGC 3 cut(s) 229, 245, 915
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 5 cut(s) 16, 71, 454, 667, 821
HphI GGTGA 3 cut(s) 74, 112, 824
Hpy166II GTNNAC 3 cut(s) 58, 592, 820
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 608, 899, 969
Hpy8I GTNNAC 3 cut(s) 58, 592, 820
HpyAV CCTTC 2 cut(s) 580, 699
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 2 cut(s) 494, 684
HpyCH4V TGCA 6 cut(s) 4, 49, 147, 251, 356, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 235, 244, 512, 635, 644
HpyF3I CTNAG 2 cut(s) 225, 918
HpySE526I ACGT 2 cut(s) 494, 684
Hsp92II CATG 8 cut(s) 251, 311, 374, 393, 701, 778, 829, 902
HspAI GCGC 3 cut(s) 229, 245, 915
KpnI GGTACC 2 cut(s) 301, 321
Kzo9I GATC 1 cut(s) 862
LmnI GCTCC 4 cut(s) 339, 511, 512, 793
Lsp1109I GCAGC 4 cut(s) 274, 368, 390, 634
MaeII ACGT 2 cut(s) 494, 684
MaeIII GTNAC 3 cut(s) 128, 170, 473
MalI GATC 1 cut(s) 864
MboI GATC 1 cut(s) 862
MhlI GDGCHC 2 cut(s) 508, 909
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 2 cut(s) 206, 651
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 4 cut(s) 80, 463, 661, 815
MnlI CCTC 9 cut(s) 50, 205, 315, 320, 407, 651, 880, 906, 952
Mox20I TGGCCA 1 cut(s) 746
MscI TGGCCA 1 cut(s) 746
MslI CAYNNNNRTG 2 cut(s) 528, 773
Msp20I TGGCCA 1 cut(s) 746
MspR9I CCNGG 3 cut(s) 338, 510, 759
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 3 cut(s) 338, 510, 759
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 5 cut(s) 235, 244, 512, 635, 644
NdeII GATC 1 cut(s) 862
NlaIII CATG 8 cut(s) 251, 311, 374, 393, 701, 778, 829, 902
NlaIV GGNNCC 4 cut(s) 299, 319, 535, 756
NmuCI GTSAC 2 cut(s) 128, 473
NspI RCATGY 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 528
PaeI GCATGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 898
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 1 cut(s) 16
PfoI TCCNGGA 2 cut(s) 508, 757
PkrI GCNGC 6 cut(s) 289, 292, 358, 380, 649, 881
PleI GAGTC 4 cut(s) 79, 462, 661, 815
PpsI GAGTC 4 cut(s) 79, 462, 661, 815
Ppu21I YACGTR 1 cut(s) 495
PpuMI RGGWCCY 2 cut(s) 214, 893
Psp1406I AACGTT 1 cut(s) 684
Psp5II RGGWCCY 2 cut(s) 214, 893
Psp6I CCWGG 3 cut(s) 336, 508, 757
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 3 cut(s) 336, 508, 757
PspN4I GGNNCC 4 cut(s) 299, 319, 535, 756
PspPI GGNCC 3 cut(s) 214, 416, 893
PspPPI RGGWCCY 2 cut(s) 214, 893
RsaI GTAC 2 cut(s) 299, 319
RsaNI GTAC 2 cut(s) 298, 318
RseI CAYNNNNRTG 2 cut(s) 528, 773
SatI GCNGC 6 cut(s) 288, 291, 357, 379, 648, 880
Sau3AI GATC 1 cut(s) 862
Sau96I GGNCC 3 cut(s) 214, 416, 893
SchI GAGTC 4 cut(s) 80, 463, 661, 815
ScrFI CCNGG 3 cut(s) 338, 510, 759
SduI GDGCHC 2 cut(s) 508, 909
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 3 cut(s) 214, 416, 893
SmiMI CAYNNNNRTG 2 cut(s) 528, 773
SphI GCATGC 1 cut(s) 251
Sse9I AATT 2 cut(s) 206, 651
SsiI CCGC 2 cut(s) 290, 880
StyD4I CCNGG 3 cut(s) 336, 508, 757
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 2 cut(s) 497, 687
TaqI TCGA 2 cut(s) 255, 933
TasI AATT 2 cut(s) 206, 651
TauI GCSGC 2 cut(s) 293, 882
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 2 cut(s) 328, 678
TseFI GTSAC 2 cut(s) 128, 473
TseI GCWGC 4 cut(s) 287, 356, 378, 647
Tsp45I GTSAC 2 cut(s) 128, 473
TspDTI ATGAA 8 cut(s) 268, 359, 378, 507, 791, 842, 942, 951
TspRI CASTG 2 cut(s) 328, 678
VpaK11BI GGWCC 3 cut(s) 214, 416, 893
XceI RCATGY 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.