Rorug04G0197600

Chitinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012820
Physical Location & Seq
Reverse (-)
34372254 .. 34375487
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0197600.1

Sequence Viewer

Length: 1152 bp
ATGAAAAAAACCAAAGTTTCCCACAGCCACCGACCATCGAACACTGACATCCCTCCAAACCAAGAAGACGAAGTAGAAGAAGAGCATCACATTCTCCGACTGCCAAACCGCATAGTGCTGGAGTTCTTCTGCAAAATCCCAACGAAATGGCTCGCCCAATGCAAGTGTGTATGCAAGTCTTGGCGCCGGTTGCTTTCCGACCCTCATTTCACCAAAAGCCTCCTTTCACGAACACCCACTTACCTTCTGCTCCGAGACACTTGTTATCTCAAGAGCCTCGTCATCTTCGACTTCGAAAAGGCATCCGACAGAAATATGTTCGAGTTCTGGGACAGGCCGAAAACCGAAGACGACTGCTTGACCAAGCTTTCTGGAGACCGCAATGCTCTCATTTCCGGCCAGGTCATCGGTTCATGCAATGGATTCCTCTGCATATACAATGACTGGCCTAATCTTTGGCGTCTTTACATTTACAATCCCATTACTGGTGAGTCTCTGACTCTTCCAACGCCTGAAATGAAATGCTCCTTTTTTTGTGGCTTAGGGTATAGTCCTATCAGTGATGTGTACAAGATAGTCATGTTTAAGTATCCGAGTGAAGGTCCTAATAATAAAAGGGAGGTGAAGGTCATGACTGTTGGCTCTGGGGTTTGGAGAACCATTGGGGATTTGGGGTTTAATGTTTTAGGGGATGCTGATTCAAAGGGGGTGTATCTTAATGGATTTCTTCACTGGATTGGTGAGTCTTGCAAGGATTCGGTTTCGATATTTGCCTTTGATGTCGAAAATGAGCGCTTCCAAGAGTTGCCACCACATCCTAGTGCTTTAAAAATCAAAACCGTTGAAATCTTCAACGGTTGGCTGTCCATATTTGTTCGCAGAAGAGGTGTCATCAGTGTTTGGGTCATGAAGGATTATGGTGTTGAGGGGTCTTGGACCAAAGAGCTTGAAATTGAAAAGGCAAGTGATTCTCGAGTCTTGATGTCTACAAACAAGGGGCAAGTGTTGATGTTACGTGATTGGGAAATTCATACTTATGATCTTGGAACAAAGAGGTATAAATGGGTTCCTGTCAATGGATTACCATTAGTGTTTCAAGAAATTGCACATACTCCAAGCTTTGTTTTGCTGAAAGACATCATCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

383

Amino Acids

44.16

Weight (kDa)

8.19

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 70 4.1e-07 F-box-like
FBA_3 PF08268 98 - 322 5e-26 F-box associated beta propeller domain
FBA_1 PF07734 136 - 331 2.1e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16920 AT3G16920
fragaria_vesca FvH4_4g19370
malus_domestica MD16G1158100.v1.1
prunus_persica Prupe.1G122900_v2.0.a1
pyrus_communis pycom13g13460 pycom16g13300
rosa_chinensis RchiOBHm_Chr4g0424411
rosa_laevigata RLG00000007477
rosa_multiflora Rmu_sc0003567.1_g000015
rosa_roxburghii Rroxscaffold_5G00366350
rosa_rugosa Rorug04G0197600
rosa_samantha Rh4AG279500 Rh4BG258800 Rh4BG284900 Rh4CG270100 Rh4DG253300
rosa_wichuraiana Rw4G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 986
AciI CCGC 2 cut(s) 109, 379
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 1026
AcyI GRCGYC 2 cut(s) 184, 460
AfaI GTAC 1 cut(s) 569
AfeI AGCGCT 1 cut(s) 794
AfiI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
AgsI TTSAA 6 cut(s) 702, 845, 853, 950, 956, 1097
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 3 cut(s) 367, 946, 1119
AluI AGCT 3 cut(s) 367, 946, 1119
Alw26I GTCTC 3 cut(s) 249, 369, 498
Ama87I CYCGRG 1 cut(s) 972
Aor51HI AGCGCT 1 cut(s) 794
AoxI GGCC 3 cut(s) 335, 397, 446
ApoI RAATTY 1 cut(s) 1026
AspLEI GCGC 2 cut(s) 186, 795
AspS9I GGNCC 2 cut(s) 602, 936
AsuHPI GGTGA 4 cut(s) 202, 500, 634, 752
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 972
AvaII GGWCC 2 cut(s) 602, 936
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 72, 354
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 1 cut(s) 600
BcoDI GTCTC 3 cut(s) 249, 369, 498
BfaI CTAG 1 cut(s) 819
BfoI RGCGCY 2 cut(s) 187, 796
BfuI GTATCC 1 cut(s) 600
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 602, 936
BmeT110I CYCGRG 1 cut(s) 972
BmgT120I GGNCC 2 cut(s) 602, 936
BmiI GGNNCC 2 cut(s) 185, 1068
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 94, 311, 682
BpiI GAAGAC 2 cut(s) 72, 354
BpmI CTGGAG 2 cut(s) 140, 393
Bpu10I CCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 1016
BsaHI GRCGYC 2 cut(s) 184, 460
BsaI GGTCTC 1 cut(s) 369
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 599, 1076
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 449, 490, 737
Bse3DI GCAATG 2 cut(s) 388, 424
BseBI CCWGG 1 cut(s) 401
BseGI GGATG 4 cut(s) 48, 302, 697, 814
BseLI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
BseMI GCAATG 2 cut(s) 388, 424
BseNI ACTGG 3 cut(s) 449, 490, 737
BshFI GGCC 3 cut(s) 337, 399, 448
BshNI GGYRCC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 972
BsiSI CCGG 2 cut(s) 187, 396
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
BsmAI GTCTC 3 cut(s) 249, 369, 498
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 3 cut(s) 337, 399, 448
Bso31I GGTCTC 1 cut(s) 369
BsoBI CYCGRG 1 cut(s) 972
Bsp119I TTCGAA 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 1 cut(s) 1039
BspACI CCGC 2 cut(s) 109, 379
BspANI GGCC 3 cut(s) 337, 399, 448
BspHI TCATGA 2 cut(s) 630, 906
BspLI GGNNCC 2 cut(s) 185, 1068
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 388, 424
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 3 cut(s) 449, 490, 737
BssAI RCCGGY 1 cut(s) 186
BssMI GATC 1 cut(s) 1039
BssNI GRCGYC 2 cut(s) 184, 460
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 637, 841, 857
Bst6I CTCTTC 3 cut(s) 75, 507, 877
BstACI GRCGYC 2 cut(s) 184, 460
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 541
BstF5I GGATG 4 cut(s) 48, 302, 697, 814
BstH2I RGCGCY 2 cut(s) 187, 796
BstHHI GCGC 2 cut(s) 186, 795
BstKTI GATC 1 cut(s) 1042
BstMAI GTCTC 3 cut(s) 249, 369, 498
BstMBI GATC 1 cut(s) 1039
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV2I GAAGAC 2 cut(s) 72, 354
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 3 cut(s) 337, 399, 448
BtsCI GGATG 4 cut(s) 48, 302, 697, 814
BtsIMutI CAGTG 4 cut(s) 42, 565, 730, 901
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 2 cut(s) 630, 906
CfoI GCGC 2 cut(s) 186, 795
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 602, 936
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 568
CviAII CATG 4 cut(s) 414, 580, 631, 907
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 1 cut(s) 541
DinI GGCGCC 1 cut(s) 185
DpnI GATC 1 cut(s) 1041
DpnII GATC 1 cut(s) 1039
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 75, 507, 877
EarI CTCTTC 3 cut(s) 75, 507, 877
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 602, 936
Eco47III AGCGCT 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 185
EheI GGCGCC 1 cut(s) 185
FaeI CATG 4 cut(s) 417, 583, 634, 910
FaqI GGGAC 1 cut(s) 344
FatI CATG 4 cut(s) 413, 579, 630, 906
FblI GTMKAC 1 cut(s) 986
FokI GGATG 4 cut(s) 35, 289, 704, 801
FspBI CTAG 1 cut(s) 819
GlaI GCGC 2 cut(s) 185, 794
GsuI CTGGAG 2 cut(s) 140, 393
HaeII RGCGCY 2 cut(s) 187, 796
HaeIII GGCC 3 cut(s) 337, 399, 448
HapII CCGG 2 cut(s) 187, 396
HgaI GACGC 1 cut(s) 449
HhaI GCGC 2 cut(s) 186, 795
Hin1I GRCGYC 2 cut(s) 184, 460
Hin1II CATG 4 cut(s) 417, 583, 634, 910
Hin6I GCGC 2 cut(s) 184, 793
HinP1I GCGC 2 cut(s) 184, 793
HindIII AAGCTT 2 cut(s) 365, 1117
HinfI GANTC 8 cut(s) 423, 491, 499, 698, 743, 755, 968, 975
HpaII CCGG 2 cut(s) 187, 396
HphI GGTGA 4 cut(s) 202, 500, 634, 752
Hpy166II GTNNAC 2 cut(s) 568, 987
Hpy188I TCNGA 6 cut(s) 98, 199, 254, 307, 498, 594
Hpy188III TCNNGA 8 cut(s) 228, 271, 372, 631, 907, 972, 979, 1097
Hpy8I GTNNAC 2 cut(s) 568, 987
HpyAV CCTTC 4 cut(s) 254, 593, 619, 904
HpyCH4III ACNGT 3 cut(s) 637, 841, 857
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 7 cut(s) 132, 162, 174, 417, 432, 750, 1106
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 1 cut(s) 1015
Hsp92I GRCGYC 2 cut(s) 184, 460
Hsp92II CATG 4 cut(s) 417, 583, 634, 910
HspAI GCGC 2 cut(s) 184, 793
KasI GGCGCC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 1039
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 255, 530
LweI GCATC 3 cut(s) 94, 311, 682
MaeI CTAG 1 cut(s) 819
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 1 cut(s) 1011
MalI GATC 1 cut(s) 1041
MboI GATC 1 cut(s) 1039
MluCI AATT 3 cut(s) 951, 1026, 1101
Mly113I GGCGCC 1 cut(s) 184
MlyI GAGTC 4 cut(s) 493, 500, 752, 984
MmeI TCCRAC 4 cut(s) 121, 222, 330, 530
MnlI CCTC 9 cut(s) 63, 213, 230, 287, 437, 613, 878, 919, 1047
MseI TTAA 4 cut(s) 585, 678, 717, 827
MslI CAYNNNNRTG 2 cut(s) 819, 1035
MspI CCGG 2 cut(s) 187, 396
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 184
NdeII GATC 1 cut(s) 1039
NlaIII CATG 4 cut(s) 417, 583, 634, 910
NlaIV GGNNCC 2 cut(s) 185, 1068
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 972
PagI TCATGA 2 cut(s) 630, 906
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 4 cut(s) 423, 698, 755, 968
PleI GAGTC 4 cut(s) 493, 499, 751, 983
PluTI GGCGCC 1 cut(s) 187
PpsI GAGTC 4 cut(s) 493, 499, 751, 983
Ppu21I YACGTR 1 cut(s) 1016
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 2 cut(s) 185, 1068
PspPI GGNCC 2 cut(s) 602, 936
PspPPI RGGWCCY 1 cut(s) 602
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 819, 1035
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 4 cut(s) 585, 678, 717, 827
Sau3AI GATC 1 cut(s) 1039
Sau96I GGNCC 2 cut(s) 602, 936
SchI GAGTC 4 cut(s) 493, 500, 752, 984
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 3 cut(s) 94, 311, 682
SfoI GGCGCC 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 972
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 2 cut(s) 602, 936
SlaI CTCGAG 1 cut(s) 972
SmiMI CAYNNNNRTG 2 cut(s) 819, 1035
SmlI CTYRAG 2 cut(s) 269, 972
SmoI CTYRAG 2 cut(s) 269, 972
Sse9I AATT 3 cut(s) 951, 1026, 1101
SsiI CCGC 2 cut(s) 109, 379
SspDI GGCGCC 1 cut(s) 183
SspMI CTAG 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 637, 841, 857
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 7 cut(s) 38, 288, 294, 321, 764, 783, 973
TasI AATT 3 cut(s) 951, 1026, 1101
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 4 cut(s) 423, 698, 755, 968
Tru1I TTAA 4 cut(s) 585, 678, 717, 827
Tru9I TTAA 4 cut(s) 585, 678, 717, 827
TscAI CASTG 4 cut(s) 49, 565, 737, 901
TspDTI ATGAA 5 cut(s) 17, 402, 533, 923, 1019
TspRI CASTG 4 cut(s) 49, 565, 737, 901
VpaK11BI GGWCC 2 cut(s) 602, 936
XapI RAATTY 1 cut(s) 1026
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 972
XmiI GTMKAC 1 cut(s) 986
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.