pycom13g13460

Chitinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012820
Physical Location & Seq
Forward (+)
9452210 .. 9455536
3327 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13460.1

Sequence Viewer

Length: 1047 bp
ATGCTTAGTATAGGTTATGGTATTTTAACAGCTCCATTTCCCCCTTCATCATCCCACCACACAAAATTAATCAAAGCAAAAAAAATGGAGAAAAAATGGCTTCTGCTTTTCTCAATGGTAGCTGCAACGCTGCTAGCGGTCGACGTTGCGAATGGTCAAGAGGAGTCAGCGGTGAAGCCGTTGGTGAAGATAGTGAAGGGCAAGAAGGTGTGTGACAAAGGGTGGGAGTGTAAGGGATGGTCTGTTTATTGTTGTAACCAGACAATTTCTGACTACTTCCAAGCTTACCAATTTGAGGACCTTTTTTCCAAGCGTAACTCGCCCGTGGCGCACGCCGTGGGGTTCTGGGACTACCACTCTTTCATCACAGCGGCCGCTGAGTACCAGCCTCATGGATTTGGTACCACAGGTGGCAAGCTCCAGGGGATGAAGGAAGTTACTGCTTTTCTTGGCCATGTTGGCAGTAAAACTTCATGTGGCTATGGGGTTGCTACAGGAGGACCAACGGCTTGGGGTCTATGTTACAACAAGGAAATGAGCCCTAGCCAGTTATACTGTGATGACTACTACAAATACACTTATCCCTGCTCTCCTGGAGCTTCATACCATGGCCGTGGTGCCTTGCCGCTCTATTGGAACTACAACTATGGAGAAACGGGTGATGCCTTAAAGGTGGACTTACTAAACCATCCAGAATACATAGAACAAAATGCAACCCTAGCCTTCCAGGCTGCAATCTGGAGGTGGATGACACCAGTGAAGAAGAAAATCCCTTCAGCCCACGACGTCTTCGTAGGCAAATGGAAGCCAACCAAGAACGACACTTTGTCCAAAAGGGTTCCTGGCTTTGGCACCACCATGAATGTGCTCTACGGAGACCAAGTCTGTGGCCAAGGTGACGTTGACTCCATGAACAACATCATCTCCCATTACCTGTATTACGTTGACAAAGTCGGTGTCGGCCGTGAAGAGGCTGGCGCTCATGATGTGCTCAGCTGCGCTGAGCAGAAGGCTTTTCAACCTTCATCATCTTCTTCTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_19

Protein Analysis

349

Amino Acids

38.38

Weight (kDa)

8.37

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 97 - 323 6e-59 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16920 AT3G16920
fragaria_vesca FvH4_4g19370
malus_domestica MD16G1158100.v1.1
prunus_persica Prupe.1G122900_v2.0.a1
pyrus_communis pycom13g13460 pycom16g13300
rosa_chinensis RchiOBHm_Chr4g0424411
rosa_laevigata RLG00000007477
rosa_multiflora Rmu_sc0003567.1_g000015
rosa_roxburghii Rroxscaffold_5G00366350
rosa_rugosa Rorug04G0197600
rosa_samantha Rh4AG279500 Rh4BG258800 Rh4BG284900 Rh4CG270100 Rh4DG253300
rosa_wichuraiana Rw4G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 789
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 3 cut(s) 401, 617, 851
AccBSI CCGCTC 1 cut(s) 628
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 137, 170, 371, 375, 626
AcoI YGGCCR 5 cut(s) 372, 451, 610, 889, 961
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 786
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 2 cut(s) 383, 403
AfiI CCNNNNNNNGG 3 cut(s) 295, 848, 970
AgsI TTSAA 1 cut(s) 1019
AhdI GACNNNNNGTC 1 cut(s) 826
AjnI CCWGG 4 cut(s) 420, 592, 726, 841
AluBI AGCT 6 cut(s) 32, 122, 284, 418, 599, 996
AluI AGCT 6 cut(s) 32, 122, 284, 418, 599, 996
Alw21I GWGCWC 2 cut(s) 870, 993
Alw26I GTCTC 1 cut(s) 870
AoxI GGCC 5 cut(s) 372, 451, 610, 889, 961
ApeKI GCWGC 4 cut(s) 122, 130, 731, 996
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
AseI ATTAAT 1 cut(s) 68
Asp718I GGTACC 1 cut(s) 401
AspLEI GCGC 3 cut(s) 331, 980, 1001
AspS9I GGNCC 2 cut(s) 298, 500
AsuHPI GGTGA 4 cut(s) 184, 196, 671, 908
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 2 cut(s) 298, 500
BalI TGGCCA 2 cut(s) 453, 891
BanI GGYRCC 3 cut(s) 401, 617, 851
BanII GRGCYC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 781
Bbv12I GWGCWC 2 cut(s) 870, 993
BbvI GCAGC 4 cut(s) 109, 117, 718, 983
BccI CCATC 2 cut(s) 231, 696
BceAI ACGGC 5 cut(s) 163, 320, 522, 597, 948
BciT130I CCWGG 4 cut(s) 422, 594, 728, 843
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 3 cut(s) 134, 543, 719
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 981
BglI GCCNNNNNGGC 2 cut(s) 459, 728
BisI GCNGC 7 cut(s) 123, 131, 372, 375, 626, 732, 997
BlpI GCTNAGC 2 cut(s) 992, 1002
BlsI GCNGC 7 cut(s) 124, 132, 373, 376, 627, 733, 998
Bme1390I CCNGG 4 cut(s) 422, 594, 728, 843
Bme18I GGWCC 2 cut(s) 298, 500
BmeRI GACNNNNNGTC 1 cut(s) 826
BmgT120I GGNCC 2 cut(s) 298, 500
BmiI GGNNCC 4 cut(s) 403, 619, 840, 853
BmrFI CCNGG 4 cut(s) 422, 594, 728, 843
BmsI GCATC 1 cut(s) 652
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 781
BpmI CTGGAG 3 cut(s) 404, 615, 760
Bpu1102I GCTNAGC 2 cut(s) 992, 1002
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 6 cut(s) 324, 336, 421, 607, 613, 892
BsaXI ACNNNNNCTCC 6 cut(s) 867, 890, 897, 908, 920, 938
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 848, 970
Bse1I ACTGG 2 cut(s) 547, 755
BseBI CCWGG 4 cut(s) 422, 594, 728, 843
BseDI CCNNGG 6 cut(s) 324, 336, 421, 607, 613, 892
BseGI GGATG 5 cut(s) 50, 242, 432, 688, 753
BseLI CCNNNNNNNGG 3 cut(s) 295, 848, 970
BseMII CTCAG 3 cut(s) 369, 993, 1006
BseNI ACTGG 2 cut(s) 547, 755
BseRI GAGGAG 1 cut(s) 176
BseX3I CGGCCG 2 cut(s) 372, 961
BseXI GCAGC 4 cut(s) 109, 117, 718, 983
Bsh1285I CGRYCG 3 cut(s) 141, 375, 964
BshFI GGCC 5 cut(s) 374, 453, 612, 891, 963
BshNI GGYRCC 3 cut(s) 401, 617, 851
BsiEI CGRYCG 3 cut(s) 141, 375, 964
BsiHKAI GWGCWC 2 cut(s) 870, 993
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 295, 848, 970
BsmAI GTCTC 1 cut(s) 870
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 5 cut(s) 374, 453, 612, 891, 963
Bso31I GGTCTC 1 cut(s) 870
Bsp1286I GDGCHC 3 cut(s) 542, 870, 993
Bsp1720I GCTNAGC 2 cut(s) 992, 1002
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 5 cut(s) 137, 170, 371, 375, 626
BspANI GGCC 5 cut(s) 374, 453, 612, 891, 963
BspCNI CTCAG 3 cut(s) 370, 994, 1005
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 4 cut(s) 403, 619, 840, 853
BspOI GCTAGC 1 cut(s) 137
BspT107I GGYRCC 3 cut(s) 401, 617, 851
BspTNI GGTCTC 1 cut(s) 870
BsrBI CCGCTC 1 cut(s) 628
BsrI ACTGG 2 cut(s) 547, 755
BssECI CCNNGG 6 cut(s) 324, 336, 421, 607, 613, 892
BssNI GRCGYC 1 cut(s) 786
BssT1I CCWWGG 2 cut(s) 607, 892
Bst2UI CCWGG 4 cut(s) 422, 594, 728, 843
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 963
BstACI GRCGYC 1 cut(s) 786
BstC8I GCNNGC 4 cut(s) 135, 333, 416, 976
BstDEI CTNAG 4 cut(s) 5, 378, 992, 1002
BstDSI CCRYGG 4 cut(s) 324, 336, 607, 613
BstF5I GGATG 5 cut(s) 50, 242, 432, 688, 753
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 3 cut(s) 331, 980, 1001
BstMAI GTCTC 1 cut(s) 870
BstMCI CGRYCG 3 cut(s) 141, 375, 964
BstMWI GCNNNNNNNGC 5 cut(s) 319, 328, 459, 719, 728
BstNI CCWGG 4 cut(s) 422, 594, 728, 843
BstSCI CCNGG 4 cut(s) 420, 592, 726, 841
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 109, 117, 718, 983
BstV2I GAAGAC 1 cut(s) 781
BstXI CCANNNNNNTGG 4 cut(s) 392, 510, 614, 887
BstZI CGGCCG 2 cut(s) 372, 961
BsuRI GGCC 5 cut(s) 374, 453, 612, 891, 963
BtgI CCRYGG 4 cut(s) 324, 336, 607, 613
BtsCI GGATG 5 cut(s) 50, 242, 432, 688, 753
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 4 cut(s) 135, 333, 416, 976
CciI TCATGA 1 cut(s) 982
CciNI GCGGCCGC 1 cut(s) 372
CfoI GCGC 3 cut(s) 331, 980, 1001
Cfr13I GGNCC 2 cut(s) 298, 500
Csp6I GTAC 2 cut(s) 382, 402
CviAII CATG 7 cut(s) 392, 455, 474, 608, 859, 910, 983
CviQI GTAC 2 cut(s) 382, 402
DdeI CTNAG 4 cut(s) 5, 378, 992, 1002
DraIII CACNNNGTG 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 826
EaeI YGGCCR 5 cut(s) 372, 451, 610, 889, 961
EagI CGGCCG 2 cut(s) 372, 961
Eam1104I CTCTTC 1 cut(s) 963
Eam1105I GACNNNNNGTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 963
EclXI CGGCCG 2 cut(s) 372, 961
Eco130I CCWWGG 2 cut(s) 607, 892
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 298, 500
Eco52I CGGCCG 2 cut(s) 372, 961
Eco57I CTGAAG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 4 cut(s) 420, 592, 726, 841
EcoT14I CCWWGG 2 cut(s) 607, 892
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 607, 892
FaeI CATG 7 cut(s) 395, 458, 477, 611, 862, 913, 986
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FaqI GGGAC 1 cut(s) 362
FatI CATG 7 cut(s) 391, 454, 473, 607, 858, 909, 982
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 7 cut(s) 123, 131, 372, 375, 626, 732, 997
FokI GGATG 5 cut(s) 37, 249, 439, 675, 760
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 7 cut(s) 123, 131, 372, 375, 626, 732, 997
FspBI CTAG 3 cut(s) 134, 543, 719
GlaI GCGC 3 cut(s) 330, 979, 1000
GluI GCNGC 7 cut(s) 123, 131, 372, 375, 626, 732, 997
GsuI CTGGAG 3 cut(s) 404, 615, 760
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 5 cut(s) 374, 453, 612, 891, 963
HhaI GCGC 3 cut(s) 331, 980, 1001
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 7 cut(s) 395, 458, 477, 611, 862, 913, 986
Hin6I GCGC 3 cut(s) 329, 978, 999
HinP1I GCGC 3 cut(s) 329, 978, 999
HincII GTYRAC 3 cut(s) 142, 904, 946
HindII GTYRAC 3 cut(s) 142, 904, 946
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 164, 905
HphI GGTGA 4 cut(s) 184, 196, 671, 908
Hpy166II GTNNAC 4 cut(s) 142, 676, 904, 946
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 4 cut(s) 158, 692, 739, 983
Hpy8I GTNNAC 4 cut(s) 142, 676, 904, 946
Hpy99I CGWCG 2 cut(s) 146, 788
HpyAV CCTTC 8 cut(s) 54, 190, 199, 424, 733, 783, 1003, 1032
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 4 cut(s) 144, 786, 900, 942
HpyCH4V TGCA 3 cut(s) 125, 713, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 319, 328, 459, 719, 728
HpyF3I CTNAG 4 cut(s) 5, 378, 992, 1002
HpySE526I ACGT 4 cut(s) 144, 786, 900, 942
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 7 cut(s) 395, 458, 477, 611, 862, 913, 986
HspAI GCGC 3 cut(s) 329, 978, 999
KpnI GGTACC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 37, 423, 596
Lsp1109I GCAGC 4 cut(s) 109, 117, 718, 983
LweI GCATC 1 cut(s) 652
MaeI CTAG 3 cut(s) 134, 543, 719
MaeII ACGT 4 cut(s) 144, 786, 900, 942
MaeIII GTNAC 6 cut(s) 212, 254, 314, 436, 521, 896
MbiI CCGCTC 1 cut(s) 628
MboII GAAGA 9 cut(s) 199, 772, 775, 781, 980, 1023, 1026, 1029, 1032
MhlI GDGCHC 3 cut(s) 542, 870, 993
MlsI TGGCCA 2 cut(s) 453, 891
MluCI AATT 3 cut(s) 65, 264, 290
MluNI TGGCCA 2 cut(s) 453, 891
MlyI GAGTC 2 cut(s) 173, 899
MnlI CCTC 6 cut(s) 154, 289, 399, 491, 735, 964
Mox20I TGGCCA 2 cut(s) 453, 891
MscI TGGCCA 2 cut(s) 453, 891
MseI TTAA 4 cut(s) 26, 68, 668, 1045
MslI CAYNNNNRTG 3 cut(s) 612, 857, 863
Msp20I TGGCCA 2 cut(s) 453, 891
MspA1I CMGCKG 4 cut(s) 170, 371, 377, 996
MspR9I CCNGG 4 cut(s) 422, 594, 728, 843
MvaI CCWGG 4 cut(s) 422, 594, 728, 843
MwoI GCNNNNNNNGC 5 cut(s) 319, 328, 459, 719, 728
NcoI CCATGG 1 cut(s) 607
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 7 cut(s) 395, 458, 477, 611, 862, 913, 986
NlaIV GGNNCC 4 cut(s) 403, 619, 840, 853
NmuCI GTSAC 2 cut(s) 212, 896
NotI GCGGCCGC 1 cut(s) 372
PagI TCATGA 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PflFI GACNNNGTC 2 cut(s) 881, 950
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 7 cut(s) 124, 132, 373, 376, 627, 733, 998
PleI GAGTC 2 cut(s) 172, 899
PpsI GAGTC 2 cut(s) 172, 899
PpuMI RGGWCCY 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 4 cut(s) 420, 592, 726, 841
PspGI CCWGG 4 cut(s) 420, 592, 726, 841
PspN4I GGNNCC 4 cut(s) 403, 619, 840, 853
PspPI GGNCC 2 cut(s) 298, 500
PspPPI RGGWCCY 1 cut(s) 298
PsyI GACNNNGTC 2 cut(s) 881, 950
PvuII CAGCTG 1 cut(s) 996
RsaI GTAC 2 cut(s) 383, 403
RsaNI GTAC 2 cut(s) 382, 402
RseI CAYNNNNRTG 3 cut(s) 612, 857, 863
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 26, 68, 668, 1045
SatI GCNGC 7 cut(s) 123, 131, 372, 375, 626, 732, 997
Sau96I GGNCC 2 cut(s) 298, 500
SchI GAGTC 2 cut(s) 173, 899
ScrFI CCNGG 4 cut(s) 422, 594, 728, 843
SduI GDGCHC 3 cut(s) 542, 870, 993
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 298, 500
SmiMI CAYNNNNRTG 3 cut(s) 612, 857, 863
Sse9I AATT 3 cut(s) 65, 264, 290
SsiI CCGC 5 cut(s) 137, 170, 371, 375, 626
SspMI CTAG 3 cut(s) 134, 543, 719
StyD4I CCNGG 4 cut(s) 420, 592, 726, 841
StyI CCWWGG 2 cut(s) 607, 892
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 4 cut(s) 147, 789, 903, 945
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 65, 264, 290
TauI GCSGC 3 cut(s) 374, 377, 628
Tru1I TTAA 4 cut(s) 26, 68, 668, 1045
Tru9I TTAA 4 cut(s) 26, 68, 668, 1045
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 2 cut(s) 212, 896
TseI GCWGC 4 cut(s) 122, 130, 731, 996
Tsp45I GTSAC 2 cut(s) 212, 896
TspDTI ATGAA 8 cut(s) 36, 352, 443, 462, 591, 875, 926, 1014
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 1 cut(s) 762
Tth111I GACNNNGTC 2 cut(s) 881, 950
VpaK11BI GGWCC 2 cut(s) 298, 500
VspI ATTAAT 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 3 cut(s) 134, 543, 719
ZraI GACGTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.