AT3G17060

Pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015931
Physical Location & Seq
Reverse (-)
5816672 .. 5818498
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17060.1

Sequence Viewer

Length: 1035 bp
ATGGGTCATCGAACAAGAATGATCCTTGTCCTAACCCTAGTTGTAATGTCCATATGGGGTTCGGACGCATCAGCAATGCAAAAGACGAAATTCGACGCCCCACTTTTGACTGAAAAAATCGCGACAAATAGATCGATAATTGTAGATATCGAAGGCAAAGGAGACTACACTTCGGTTCAGAAAGCCATCGATGCTGTCCCTGTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAACGGTGATCGAATCTTCGCAAAGTTCGGTCGACAATGTTGCTTCAGCTACTTTCAAAGTCGAGGCTAATCACTTTGTCGCTTTTGGTATCAGCATCCGAAATGATGCACCTGTCGGAATGGCATTCACATCTGAGAACCAATCGGTGGCAGCGTTTGTGGCTGCTGACAAAGTAGCGTTTTACCATTGTGCGTTCTACAGCTTACACAACACTTTGTTTGATAACAAAGGTAGACATTACTACCATGAGTGTTACATCCAAGGCTCCATAGACTTCATCTTCGGTCGCGCAACTTCCATTTTCAACAATTGTGAGATATTTGTGATATCAGACAAGAGGGTGAAACCGTATGGGTCAATCACAGCACACCATAGGGAAAGCGCAGAGGAAAAAACGGGTTACGTGTTCATAAGAGGCAAAGTGTACGGAATTGATGAGGTTTACTTGGGCCGAGCCAAAGGACCTTATTCTCGAGTCATCTTTGCCAAGACTTACTTGTCCAAGACCGTTGTGCCTGATGGTTGGACAAACTGGAGTTACCATGGCTCGACCCAGAATCTATACCATGGGGAGTATAAATGTCATGGACCAGGAGCTGAGAGGCAAAAGAGATCTGACTGGGCCAAAGATCTTACCAAACAAGAAGTTGAGTCTTTCTTGTCCATTGATTTTATTGATGGCACTTCTTGGCTCCCTGTTTGGCTTCAGGAAAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

344

Amino Acids

38.81

Weight (kDa)

8.93

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 46 - 332 1.9e-64 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17060
fragaria_vesca FvH4_4g19840
malus_domestica MD13G1153000.v1.1 MD16G1153400.v1.1
prunus_persica Prupe.1G116600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0425411
rosa_laevigata RLG00000007371
rosa_multiflora Rmu_sc0001900.1_g000046
rosa_roxburghii Rroxscaffold_5G00367370
rosa_rugosa Rorug04G0202700
rosa_samantha Rh4AG259900 Rh4BG265800 Rh4CG277100 Rh4DG261800
rosa_wichuraiana Rw4G022500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 460
AccI GTMKAC 2 cut(s) 345, 547
AccII CGCG 2 cut(s) 122, 603
AccIII TCCGGA 1 cut(s) 268
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 342, 1004
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 2 cut(s) 370, 619
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 3 cut(s) 362, 516, 911
AluI AGCT 3 cut(s) 362, 516, 911
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 156
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 1 cut(s) 786
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 2 cut(s) 763, 936
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 464, 476
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AspLEI GCGC 2 cut(s) 605, 698
AspS9I GGNCC 4 cut(s) 763, 776, 902, 936
AsuHPI GGTGA 2 cut(s) 331, 667
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 2 cut(s) 776, 902
BaeGI GKGCMC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 463, 476
BccI CCATC 3 cut(s) 194, 827, 986
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 906
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 511
BglII AGATCT 2 cut(s) 926, 943
BisI GCNGC 2 cut(s) 465, 477
BlsI GCNGC 2 cut(s) 466, 478
Bme1390I CCNGG 1 cut(s) 906
Bme18I GGWCC 2 cut(s) 776, 902
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 4 cut(s) 763, 776, 902, 936
BmiI GGNNCC 2 cut(s) 580, 1007
BmrFI CCNGG 1 cut(s) 906
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 4 cut(s) 77, 181, 409, 417
BmuI ACTGGG 1 cut(s) 943
BpmI CTGGAG 1 cut(s) 868
Bsa29I ATCGAT 2 cut(s) 134, 189
BsaAI YACGTR 1 cut(s) 718
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 574, 856, 880
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 851, 938
Bse3DI GCAATG 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 1 cut(s) 906
BseCI ATCGAT 2 cut(s) 134, 189
BseDI CCNNGG 3 cut(s) 574, 856, 880
BseGI GGATG 2 cut(s) 408, 570
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 438, 903
BseNI ACTGG 2 cut(s) 851, 938
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 2 cut(s) 463, 476
Bsh1236I CGCG 2 cut(s) 122, 603
Bsh1285I CGRYCG 2 cut(s) 345, 601
BshFI GGCC 2 cut(s) 765, 938
BshVI ATCGAT 2 cut(s) 134, 189
BsiEI CGRYCG 2 cut(s) 345, 601
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 765, 938
BsoBI CYCGRG 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 5 cut(s) 21, 131, 321, 926, 943
Bsp19I CCATGG 2 cut(s) 856, 880
Bsp68I TCGCGA 1 cut(s) 122
BspANI GGCC 2 cut(s) 765, 938
BspCNI CTCAG 2 cut(s) 439, 904
BspDI ATCGAT 2 cut(s) 134, 189
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 2 cut(s) 122, 603
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 580, 1007
BspPI GGATC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 2 cut(s) 851, 938
BssECI CCNNGG 3 cut(s) 574, 856, 880
BssMI GATC 5 cut(s) 21, 131, 321, 926, 943
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 3 cut(s) 574, 856, 880
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 3 cut(s) 319, 663, 823
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 718
BstDEI CTNAG 2 cut(s) 447, 912
BstDSI CCRYGG 2 cut(s) 856, 880
BstF5I GGATG 2 cut(s) 408, 570
BstFNI CGCG 2 cut(s) 122, 603
BstHHI GCGC 2 cut(s) 605, 698
BstKTI GATC 5 cut(s) 24, 134, 324, 929, 946
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 5 cut(s) 21, 131, 321, 926, 943
BstMCI CGRYCG 2 cut(s) 345, 601
BstMWI GCNNNNNNNGC 2 cut(s) 191, 473
BstNI CCWGG 1 cut(s) 906
BstSCI CCNGG 1 cut(s) 904
BstSFI CTRYAG 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 2 cut(s) 122, 603
BstV1I GCAGC 2 cut(s) 463, 476
BstX2I RGATCY 2 cut(s) 926, 943
BstYI RGATCY 2 cut(s) 926, 943
Bsu15I ATCGAT 2 cut(s) 134, 189
BsuRI GGCC 2 cut(s) 765, 938
BsuTUI ATCGAT 2 cut(s) 134, 189
BtgI CCRYGG 2 cut(s) 856, 880
BtsCI GGATG 2 cut(s) 408, 570
BtuMI TCGCGA 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 911
CciI TCATGA 1 cut(s) 291
CfoI GCGC 2 cut(s) 605, 698
Cfr13I GGNCC 4 cut(s) 763, 776, 902, 936
ClaI ATCGAT 2 cut(s) 134, 189
CseI GACGC 2 cut(s) 74, 104
Csp6I GTAC 1 cut(s) 739
CviAII CATG 6 cut(s) 230, 292, 560, 857, 881, 899
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 2 cut(s) 447, 912
DpnI GATC 5 cut(s) 23, 133, 323, 928, 945
DpnII GATC 5 cut(s) 21, 131, 321, 926, 943
DrdI GACNNNNNNGTC 1 cut(s) 811
DseDI GACNNNNNNGTC 1 cut(s) 811
Eco130I CCWWGG 3 cut(s) 574, 856, 880
Eco32I GATATC 2 cut(s) 148, 642
Eco47I GGWCC 2 cut(s) 776, 902
Eco57I CTGAAG 2 cut(s) 342, 1004
Eco88I CYCGRG 1 cut(s) 786
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 904
EcoRV GATATC 2 cut(s) 148, 642
EcoT14I CCWWGG 3 cut(s) 574, 856, 880
ErhI CCWWGG 3 cut(s) 574, 856, 880
FaeI CATG 6 cut(s) 233, 295, 563, 860, 884, 902
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 182
FatI CATG 6 cut(s) 229, 291, 559, 856, 880, 898
FauNDI CATATG 1 cut(s) 53
FblI GTMKAC 2 cut(s) 345, 547
Fnu4HI GCNGC 2 cut(s) 465, 477
FokI GGATG 2 cut(s) 395, 557
Fsp4HI GCNGC 2 cut(s) 465, 477
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 604, 697
GluI GCNGC 2 cut(s) 465, 477
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 2 cut(s) 765, 938
HapII CCGG 1 cut(s) 269
HgaI GACGC 2 cut(s) 74, 104
HhaI GCGC 2 cut(s) 605, 698
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 6 cut(s) 233, 295, 563, 860, 884, 902
Hin6I GCGC 2 cut(s) 603, 696
HinP1I GCGC 2 cut(s) 603, 696
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 5 cut(s) 243, 326, 789, 871, 965
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 331, 667
Hpy166II GTNNAC 5 cut(s) 262, 346, 548, 739, 757
Hpy188I TCNGA 7 cut(s) 64, 180, 413, 431, 448, 646, 931
Hpy188III TCNNGA 5 cut(s) 121, 269, 292, 786, 1022
Hpy8I GTNNAC 5 cut(s) 262, 346, 548, 739, 757
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 319, 663, 823
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 3 cut(s) 79, 262, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 473
HpyF3I CTNAG 2 cut(s) 447, 912
HpySE526I ACGT 1 cut(s) 717
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 6 cut(s) 233, 295, 563, 860, 884, 902
HspAI GCGC 2 cut(s) 603, 696
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 5 cut(s) 21, 131, 321, 926, 943
LmnI GCTCC 3 cut(s) 584, 908, 1011
Lsp1109I GCAGC 2 cut(s) 463, 476
LweI GCATC 4 cut(s) 77, 181, 409, 417
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 4 cut(s) 206, 566, 713, 851
MalI GATC 5 cut(s) 23, 133, 323, 928, 945
MboI GATC 5 cut(s) 21, 131, 321, 926, 943
MboII GAAGA 2 cut(s) 321, 586
MfeI CAATTG 1 cut(s) 622
MflI RGATCY 2 cut(s) 926, 943
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 5 cut(s) 89, 138, 214, 622, 744
MlyI GAGTC 2 cut(s) 798, 974
MmeI TCCRAC 2 cut(s) 409, 818
MnlI CCTC 7 cut(s) 288, 370, 645, 694, 722, 745, 909
MroI TCCGGA 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 906
MunI CAATTG 1 cut(s) 622
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 2 cut(s) 122, 603
MwoI GCNNNNNNNGC 2 cut(s) 191, 473
NcoI CCATGG 2 cut(s) 856, 880
NdeI CATATG 1 cut(s) 53
NdeII GATC 5 cut(s) 21, 131, 321, 926, 943
NlaIII CATG 6 cut(s) 233, 295, 563, 860, 884, 902
NlaIV GGNNCC 2 cut(s) 580, 1007
NmeAIII GCCGAG 1 cut(s) 791
NruI TCGCGA 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 786
PagI TCATGA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 243, 326, 871
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 466, 478
PleI GAGTC 2 cut(s) 797, 973
PpsI GAGTC 2 cut(s) 797, 973
Ppu21I YACGTR 1 cut(s) 718
PpuMI RGGWCCY 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 2 cut(s) 580, 1007
PspPI GGNCC 4 cut(s) 763, 776, 902, 936
PspPPI RGGWCCY 1 cut(s) 776
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 926, 943
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 344
SatI GCNGC 2 cut(s) 465, 477
Sau3AI GATC 5 cut(s) 21, 131, 321, 926, 943
Sau96I GGNCC 4 cut(s) 763, 776, 902, 936
SchI GAGTC 2 cut(s) 798, 974
ScrFI CCNGG 1 cut(s) 906
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 364, 427, 518, 547, 720, 756, 781, 913
SfaNI GCATC 4 cut(s) 77, 181, 409, 417
SfcI CTRYAG 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 786
SinI GGWCC 2 cut(s) 776, 902
SlaI CTCGAG 1 cut(s) 786
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 5 cut(s) 89, 138, 214, 622, 744
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 3 cut(s) 574, 856, 880
TaaI ACNGT 3 cut(s) 319, 663, 823
TaiI ACGT 1 cut(s) 720
TaqII GACCGA 2 cut(s) 331, 587
TasI AATT 5 cut(s) 89, 138, 214, 622, 744
TfiI GAWTC 3 cut(s) 243, 326, 871
TseI GCWGC 2 cut(s) 464, 476
TspDTI ATGAA 4 cut(s) 274, 280, 580, 712
TspGWI ACGGA 2 cut(s) 224, 756
Van91I CCANNNNNTGG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 776, 902
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 786
XmiI GTMKAC 2 cut(s) 345, 547
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.