Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015931

Physical Location & Seq

Genomic Coordinates Forward (+)

9185055 .. 9186930

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTGGGTCTACATCCACAACATTCATTACCTTGGCAATCATTTTTTCCATCGCAGTAACTTTCACAAATGTTGTCGATGGATTGACTGCGGAAACAGTAATTGACTCTCCCCTGTTGACCCAAAAGATTAACAGCAACCGCACCATCAAGGTCGATATCAATGGCAAGGGAGATTTCAAATCTGTTCAGGCTGCCATTGATTCTGTTCCTGAAGGAAATAGTAAGTGGATCATCATCCATGTTAGGAAAGGGGTGTACAGAGAAAAGGTGATCGTACCACGTAGTAAGCCCTATATATTCATGAGAGGAAATGGGAAGGGAAGGTCCGCCATTGTCTGGTCCCAAAGCTCTTCGGACAATGTCGAATCTGCTACTTTCAGCGTCGAAGCTCCCCACTTCATTGCCTTTGGGATTAGCTTCAAGAATGAGGCTCCCACAGGTGTGGCTTACACCTCGCAGAACCAGTCAGTGGCAGCATTTGTGGCAGCAGACAAAGTAGCATTTTACCATTGTGCATTTTACAGTACCCATAACACCCTCTTCGATTATAAGGGCAGGCATTATTATGATAACTGCTACATCCAAGGCTCAATCGACTTCATCTTTGGACGTGGTAAATCTGTCTACCACGGCTGTGAGATCTTTGTGATTGGAGACAAAAGGGTGTCAATTAAGGGGTCTGTGACAGCTCAAAATAGGGAGAGCGAGAAGGAGAACAGTGGGTTTGTGTTCAACAAGGGCAAGCTGTATGGTGTTGGGGACACTGTGTATCTTGGCAGGGCCAAGGGTGCCTTTTCCAGAGTTGTTTATGCACACATGTATCTCTCCAAAACCGTCGTGCCTCAAGGCTGGACCAATTGGAGCTATGCTGGTGGCACAGAAACCTTATACCATGCGGAATATAAATGCAAAGGGCCAGGAGCCGAGGCTGGAGGGCGAGCTGAATGGGCCAAACAACTCACTGAAAAAGAAGCTGCCCCCTTCTTGTCTATCGACTTCATCAATGGCCAGGAATGGCTCCCAGTGTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

346

Amino Acids

38.03

Weight (kDa)

9.03

Isoelectric Point (pI)

25.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17060
fragaria_vesca	FvH4_4g19840
malus_domestica	MD13G1153000.v1.1 MD16G1153400.v1.1
prunus_persica	Prupe.1G116600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0425411
rosa_laevigata	RLG00000007371
rosa_multiflora	Rmu_sc0001900.1_g000046
rosa_roxburghii	Rroxscaffold_5G00367370
rosa_rugosa	Rorug04G0202700
rosa_samantha	Rh4AG259900 Rh4BG265800 Rh4CG277100 Rh4DG261800
rosa_wichuraiana	Rw4G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	791
AccB7I	CCANNNNNTGG	2 cut(s)	339, 472
AccI	GTMKAC	2 cut(s)	11, 627
AciI	CCGC	4 cut(s)	92, 142, 330, 899
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	1009
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	260, 279, 529
AfiI	CCNNNNNNNGG	2 cut(s)	339, 472
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	3 cut(s)	181, 424, 736
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	919, 1011
AleI	CACNNNNGTG	2 cut(s)	443, 636
AluBI	AGCT	8 cut(s)	351, 392, 420, 692, 748, 867, 944, 977
AluI	AGCT	8 cut(s)	351, 392, 420, 692, 748, 867, 944, 977
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	4 cut(s)	783, 917, 951, 1009
ApeKI	GCWGC	4 cut(s)	194, 476, 488, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	6 cut(s)	327, 342, 783, 855, 917, 951
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	327, 342, 855
BaeI	ACNNNNGTAYC	2 cut(s)	806, 839
BalI	TGGCCA	1 cut(s)	1011
BanI	GGYRCC	1 cut(s)	791
BbvI	GCAGC	4 cut(s)	181, 488, 500, 964
BccI	CCATC	3 cut(s)	59, 74, 155
BceAI	ACGGC	1 cut(s)	649
BciT130I	CCWGG	2 cut(s)	921, 1013
BcoDI	GTCTC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	4 cut(s)	195, 477, 489, 978
BlsI	GCNGC	4 cut(s)	196, 478, 490, 979
Bme1390I	CCNGG	2 cut(s)	921, 1013
Bme18I	GGWCC	3 cut(s)	327, 342, 855
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	6 cut(s)	327, 342, 783, 855, 917, 951
BmiI	GGNNCC	5 cut(s)	344, 435, 793, 925, 1022
BmrFI	CCNGG	2 cut(s)	921, 1013
BmrI	ACTGGG	1 cut(s)	1019
BmuI	ACTGGG	1 cut(s)	1019
BpmI	CTGGAG	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	5 cut(s)	33, 586, 631, 786, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 472
Bse1I	ACTGG	2 cut(s)	466, 1025
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	921, 1013
BseDI	CCNNGG	5 cut(s)	33, 586, 631, 786, 927
BseGI	GGATG	3 cut(s)	14, 237, 582
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	339, 472
BseMI	GCAATG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	466, 1025
BseXI	GCAGC	4 cut(s)	181, 488, 500, 964
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	4 cut(s)	785, 919, 953, 1011
BshNI	GGYRCC	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	328, 776
BslI	CCNNNNNNNGG	2 cut(s)	339, 472
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	328, 776
BsnI	GGCC	4 cut(s)	785, 919, 953, 1011
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	231, 273, 642
BspACI	CCGC	4 cut(s)	92, 142, 330, 899
BspANI	GGCC	4 cut(s)	785, 919, 953, 1011
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	5 cut(s)	344, 435, 793, 925, 1022
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	466, 1025
BssECI	CCNNGG	5 cut(s)	33, 586, 631, 786, 927
BssMI	GATC	3 cut(s)	231, 273, 642
BssT1I	CCWWGG	3 cut(s)	33, 586, 786
Bst2UI	CCWGG	2 cut(s)	921, 1013
Bst4CI	ACNGT	5 cut(s)	100, 527, 722, 769, 838
Bst6I	CTCTTC	2 cut(s)	358, 548
BstAUI	TGTACA	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	560, 746, 942
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	14, 237, 582
BstKTI	GATC	3 cut(s)	234, 276, 645
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	3 cut(s)	231, 273, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 791, 950
BstNI	CCWGG	2 cut(s)	921, 1013
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	919, 1011
BstV1I	GCAGC	4 cut(s)	181, 488, 500, 964
BstX2I	RGATCY	1 cut(s)	642
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	785, 919, 953, 1011
BtgI	CCRYGG	1 cut(s)	631
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	14, 237, 582
BtsIMutI	CAGTG	5 cut(s)	477, 727, 765, 963, 1032
Cac8I	GCNNGC	3 cut(s)	560, 746, 942
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	6 cut(s)	327, 342, 783, 855, 917, 951
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	259, 278, 528
CviAII	CATG	4 cut(s)	242, 304, 820, 896
CviQI	GTAC	3 cut(s)	259, 278, 528
DpnI	GATC	3 cut(s)	233, 275, 644
DpnII	GATC	3 cut(s)	231, 273, 642
EaeI	YGGCCR	1 cut(s)	1009
Eam1104I	CTCTTC	2 cut(s)	358, 548
EarI	CTCTTC	2 cut(s)	358, 548
EciI	GGCGGA	1 cut(s)	319
Eco130I	CCWWGG	3 cut(s)	33, 586, 786
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	3 cut(s)	327, 342, 855
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	919, 1011
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	3 cut(s)	33, 586, 786
ErhI	CCWWGG	3 cut(s)	33, 586, 786
FaeI	CATG	4 cut(s)	245, 307, 823, 899
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	2 cut(s)	328, 776
FatI	CATG	4 cut(s)	241, 303, 819, 895
FblI	GTMKAC	2 cut(s)	11, 627
Fnu4HI	GCNGC	4 cut(s)	195, 477, 489, 978
FokI	GGATG	2 cut(s)	224, 569
Fsp4HI	GCNGC	4 cut(s)	195, 477, 489, 978
GluI	GCNGC	4 cut(s)	195, 477, 489, 978
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	4 cut(s)	785, 919, 953, 1011
HgaI	GACGC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	245, 307, 823, 899
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	107, 203, 368
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	4 cut(s)	12, 120, 259, 628
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	4 cut(s)	212, 304, 424, 801
Hpy8I	GTNNAC	4 cut(s)	12, 120, 259, 628
Hpy99I	CGWCG	2 cut(s)	389, 842
HpyAV	CCTTC	5 cut(s)	209, 313, 318, 706, 994
HpyCH4III	ACNGT	5 cut(s)	100, 527, 722, 769, 838
HpyCH4IV	ACGT	2 cut(s)	283, 613
HpyCH4V	TGCA	3 cut(s)	518, 815, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 791, 950
HpySE526I	ACGT	2 cut(s)	283, 613
Hsp92II	CATG	4 cut(s)	245, 307, 823, 899
Kzo9I	GATC	3 cut(s)	231, 273, 642
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	5 cut(s)	397, 439, 864, 923, 1026
Lsp1109I	GCAGC	4 cut(s)	181, 488, 500, 964
MaeII	ACGT	2 cut(s)	283, 613
MaeIII	GTNAC	2 cut(s)	58, 685
MalI	GATC	3 cut(s)	233, 275, 644
MboI	GATC	3 cut(s)	231, 273, 642
MboII	GAAGA	2 cut(s)	345, 535
MfeI	CAATTG	1 cut(s)	859
MflI	RGATCY	1 cut(s)	642
MlsI	TGGCCA	1 cut(s)	1011
MluCI	AATT	3 cut(s)	102, 672, 859
MluNI	TGGCCA	1 cut(s)	1011
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	302, 424, 466, 551, 855, 922, 929
Mox20I	TGGCCA	1 cut(s)	1011
MscI	TGGCCA	1 cut(s)	1011
MseI	TTAA	2 cut(s)	132, 675
MslI	CAYNNNNRTG	3 cut(s)	443, 567, 636
Msp20I	TGGCCA	1 cut(s)	1011
MspR9I	CCNGG	2 cut(s)	921, 1013
MunI	CAATTG	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	921, 1013
MwoI	GCNNNNNNNGC	3 cut(s)	485, 791, 950
NdeII	GATC	3 cut(s)	231, 273, 642
NlaIII	CATG	4 cut(s)	245, 307, 823, 899
NlaIV	GGNNCC	5 cut(s)	344, 435, 793, 925, 1022
NmeAIII	GCCGAG	1 cut(s)	952
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	823
OliI	CACNNNNGTG	2 cut(s)	443, 636
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	203, 368
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	2 cut(s)	339, 472
PkrI	GCNGC	4 cut(s)	196, 478, 490, 979
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	284
PscI	ACATGT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	919, 1011
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	919, 1011
PspN4I	GGNNCC	5 cut(s)	344, 435, 793, 925, 1022
PspPI	GGNCC	6 cut(s)	327, 342, 783, 855, 917, 951
PsuI	RGATCY	1 cut(s)	642
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	260, 279, 529
RsaNI	GTAC	3 cut(s)	259, 278, 528
RseI	CAYNNNNRTG	3 cut(s)	443, 567, 636
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	132, 675
SatI	GCNGC	4 cut(s)	195, 477, 489, 978
Sau3AI	GATC	3 cut(s)	231, 273, 642
Sau96I	GGNCC	6 cut(s)	327, 342, 783, 855, 917, 951
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	921, 1013
SinI	GGWCC	3 cut(s)	327, 342, 855
SmiMI	CAYNNNNRTG	3 cut(s)	443, 567, 636
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	3 cut(s)	102, 672, 859
SsiI	CCGC	4 cut(s)	92, 142, 330, 899
StyD4I	CCNGG	2 cut(s)	919, 1011
StyI	CCWWGG	3 cut(s)	33, 586, 786
TaaI	ACNGT	5 cut(s)	100, 527, 722, 769, 838
TaiI	ACGT	2 cut(s)	286, 616
TaqI	TCGA	7 cut(s)	78, 156, 366, 387, 546, 597, 996
TasI	AATT	3 cut(s)	102, 672, 859
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	203, 368
Tru1I	TTAA	2 cut(s)	132, 675
Tru9I	TTAA	2 cut(s)	132, 675
TscAI	CASTG	5 cut(s)	477, 727, 772, 970, 1032
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	4 cut(s)	194, 476, 488, 977
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	5 cut(s)	16, 292, 391, 592, 991
TspRI	CASTG	5 cut(s)	477, 727, 772, 970, 1032
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	2 cut(s)	339, 472
VpaK11BI	GGWCC	3 cut(s)	327, 342, 855
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	2 cut(s)	11, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.