Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004891

Physical Location & Seq

Genomic Coordinates Reverse (-)

5972580 .. 5976211

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGCTCCACCTGGATCAATTGGAGTGGTTGACCCTGGATGGGAGCATGGTGTTGCACAAGACCAACGGAAGAAGAAGGTTAAATGCAATTACTGTGGAAAGATTGTTAGTGGAGGGATATACAGATTGAAGCAACACTTGGCTCGAGTTTCAGGAGAAGTTACTTATTGTGACAAGTCTCCGGAGGAAGTATGTATGAGGATGAAGGAGAATCTGGTGCGTTCCACCAAAAAGCTGAGGCAGTCTGAGGATAATAGTGGACAGTCTTGTTCCAGTTTCCATCAATCTAACAATGACGATGAAGCGGATGAGGAAGAGCGGCGCTGCTGGTCTATAAGAAGTAAGGGAAAGCTAGGCTTGAGTGATGGGAGTCTTCTTCGGTCTTCAGGTTATATTGATCCTGGATGGGAACATGGTATTGCTCAGGACGAGAGGAAAAAGAAAGTGAAATGTAATTACTGTAACAAGATTGTGAGTGGCGGTATTAACCGTTTTAAACAGCACCTGGCGAGAATACCTGGAGAGGTAGCGCCGTGTAAAACTGCTCCCGAGGAGGTTTATGTTAAGATTAAAGAGAATATGAAATGGCATCGAGCTGGGAAGAGGCAGAACAGACCTGATGATGAAATGGGAGCTTTAACTTTCAGAACGGTCTCTCAGGATCCTGACCAAGAAGAAGACAGAGAAGATCATGACTTCTATCCAACCAGCCAAGATAGGTTGATGCTGGGAAATGGAAGGTTTAGTAAAGACAAAAGAAAAAGCTTTGATTCAACGAACATGAGATCTGTCTCTGAAGCAAAAACAAAGAGAGCGAGGATGATACCGTTTCAGTCACCTTCTTCGAGCAAGCAAAGGAAACTATACAGTAGCTGTTCAAACAGAGTTGTATCACGAAAAGACGTCACATCCTCCATTTCCAAATTCTTACACCATGTAGGAGTTCCCACAGAAGCAGCAAATTCTCTGTACTTTCAAAAGATGATTGAATTGATTGGTATGTACGGAGAGGGTTTCGTTGTGCCCTCGAGTCAGCTGTTTTCTGGTAGGCTCTTACAGGAAGAGATGTCAACTATCAAAAGCTACTTGAGGGAGTACAGATCTTCTTGGGTGGTTACAGGTTGTTCCATAATGGCAGATACTTGGACCAACACAGAGGGCAAGAAAATGATCAGTTTCTTGGTCTCGTGCCCTCGTGGTGTCTACTTCCACTCCTCGATTGATGCCACTGATATAGTAGAAGATGCTTTAAGCCTTTTCAAGTGTCTAGACAAACTAGTTGACGACATTGGCGAGGAAAATGTGGTGCAGGTTATTACACAGAACACTGCTATCTTTAGAAGTGCTGGAAAATTACTTGAAGAGAAGAGAAAGAATTTGTATTGGACTCCTTGTGCAATACATTGCACAGAACTGGTTCTTGAAGACTTCTCAAAGCTAGAATTTGTCTCCGAGTGCTTAGAGAAAGCCCAAAGAATCACAAGATTCATTTACAATCAAACATGGCTGCTTAATCTTATGAAGAACGAATTCACACAGGGACTAGATCTTCTTAGACCAGCAGTCATGCGCCACGCTTCCGGGTTCACCACTCTTCAAAGTCTTATGGACCACAAGGCCAGTCTCAGAGGTCTGTTTCAATCTGACGGCTGGATTTTGTCACAGACCGCCGCCAAGTCTGAAGAGGGAAGAGAAGTGGAGAAGATGGTGTTGAGTGCTGTGTTTTGGAAGAAGGTTCAGTATGTTTTGAAATCGGTTGATCCGGTGATGCAGGTGATTCACATGATCAATGATGGTGGCGATAGACTATCTATGCCATATGCTTACGGTTACATGTGCTGTGCGAAAATGGCGATCAAGTCTATTCATAGCGATGATGCAAGGAAATACGGACCGTTTTGGCGGGTGATAGAATACCGTTGGAACCCATTGTTTCATCATCCTCTCTATGTGGCTGCATATTTCTTCAACCCGGCATACAAATATCGTCCTGATTTTATGGCGCAGTCTGAGGTTGTGCGTGGAGTTAACGAATGCATTGTTAGGCTTGAGCCTGATAACACGCGTAGAATCACAGCATTGATGCAGATTCCGGATTATACTTGTGCGAAAGCTGATTTTGGAACGGATATAGCCATTGGCACAAGAACAGAGCTTGATCCATCGGCGTGGTGGCAACAGCATGGGATAAGCTGTTTGGAACTCCAGCGAGTGGCGGTTCGGATACTGAGCCACACTTGCTCGTCTGTTGGGTGTGAGCCTAAGTGGAGCGTGTACGACCAAGTTAACAGTCAATGCCAGAGCCAATTTGGGAAAAAATCAACGAAAGATCTAACATACGTTCATTACAACTTACGGCTCAGAGAAAAACAGCTGAAGCAACGGCTACATTATGAGGATGAACCACCACCAACTCTTAACCACGCTTTGCTGGATCGGTTGCTCCCTGACTGGCTCGTAACATCCGAGAAGGAGGAGGAGGAGGCTTTGCACGGGGAAGACAGAGCAGAGAAGGAAGACCATGAAGACGATGAGGAAGAGGAGGAGAAGTTTTACATGGAATCTGGTAACGTTGACGGTGAAGGTGAAGACAACCTTGATCCTTACGATGATGATCTTAGTGACGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

877

Amino Acids

100.52

Weight (kDa)

6.17

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	14 - 49	4.2e-06	BED zinc finger
zf-BED	PF02892	136 - 171	6.3e-07	BED zinc finger
DUF659	PF04937	342 - 493	1.9e-60	Domain of unknown function (DUF659)
Dimer_Tnp_hAT	PF05699	717 - 785	3e-07	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17450 AT3G17450
fragaria_vesca	FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491
malus_domestica	MD13G1139200.v1.1 MD16G1136600.v1.1
prunus_persica	Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1
pyrus_communis	pycom13g12110 pycom16g12020 pycom16g12030 pycom16g12040
rosa_chinensis	RchiOBHm_Chr4g0427461
rosa_laevigata	RLG00000007243
rosa_roxburghii	Rroxscaffold_5G00369110
rosa_rugosa	Rorug04G0208700
rosa_samantha	Rh4AG274500 Rh4BG280200 Rh4CG295200 Rh4DG277700
rosa_wichuraiana	Rw4G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1762
AatII	GACGTC	1 cut(s)	906
Acc36I	ACCTGC	2 cut(s)	1300, 1762
AccB7I	CCANNNNNTGG	1 cut(s)	2212
AccBSI	CCGCTC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	1203
AccII	CGCG	1 cut(s)	2065
AccIII	TCCGGA	2 cut(s)	181, 2092
AciI	CCGC	7 cut(s)	305, 319, 480, 1668, 1671, 1903, 2216
AclI	AACGTT	1 cut(s)	2571
AclWI	GGATC	8 cut(s)	22, 392, 656, 669, 1754, 2153, 2442, 2594
AcsI	RAATTY	5 cut(s)	923, 961, 1375, 1442, 1529
AcuI	CTGAAG	4 cut(s)	369, 816, 1701, 2396
AcyI	GRCGYC	1 cut(s)	903
AfaI	GTAC	4 cut(s)	971, 1004, 1097, 2276
AfiI	CCNNNNNNNGG	2 cut(s)	40, 2212
AflIII	ACRYGT	2 cut(s)	1833, 2063
AhdI	GACNNNNNGTC	1 cut(s)	1562
AhlI	ACTAGT	1 cut(s)	1276
AjnI	CCWGG	5 cut(s)	10, 34, 400, 504, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
Alw26I	GTCTC	6 cut(s)	183, 658, 796, 1189, 1453, 1628
AlwI	GGATC	8 cut(s)	22, 392, 656, 669, 1754, 2153, 2442, 2594
AlwNI	CAGNNNCTG	2 cut(s)	505, 873
Ama87I	CYCGRG	3 cut(s)	144, 548, 1027
Aor13HI	TCCGGA	2 cut(s)	181, 2092
AoxI	GGCC	1 cut(s)	1617
ApeKI	GCWGC	4 cut(s)	324, 956, 1507, 1955
ApoI	RAATTY	5 cut(s)	923, 961, 1375, 1442, 1529
Asp700I	GAANNNNTTC	2 cut(s)	1416, 1529
AspLEI	GCGC	4 cut(s)	324, 532, 1572, 2005
AspS9I	GGNCC	3 cut(s)	1146, 1609, 1892
AsuC2I	CCSGG	2 cut(s)	1582, 1973
AsuHPI	GGTGA	7 cut(s)	828, 1579, 1777, 1786, 1918, 2591, 2597
AvaI	CYCGRG	3 cut(s)	144, 548, 1027
AvaII	GGWCC	3 cut(s)	1146, 1609, 1892
BaeGI	GKGCMC	2 cut(s)	1026, 1193
BamHI	GGATCC	1 cut(s)	661
BauI	CACGAG	2 cut(s)	1186, 1194
BbsI	GAAGAC	8 cut(s)	365, 375, 684, 1431, 2505, 2523, 2532, 2595
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	311, 968, 1494, 1942
BccI	CCATC	7 cut(s)	33, 288, 359, 399, 1699, 1787, 2170
BceAI	ACGGC	4 cut(s)	517, 1663, 2372, 2399
BciT130I	CCWGG	5 cut(s)	12, 36, 402, 506, 519
BciVI	GTATCC	1 cut(s)	2217
BclI	TGATCA	2 cut(s)	1170, 1785
BcnI	CCSGG	2 cut(s)	1582, 1973
BcoDI	GTCTC	6 cut(s)	183, 658, 796, 1189, 1453, 1628
BcuI	ACTAGT	1 cut(s)	1276
BfaI	CTAG	5 cut(s)	353, 1268, 1277, 1439, 1544
BfoI	RGCGCY	2 cut(s)	325, 533
BfuAI	ACCTGC	2 cut(s)	1300, 1762
BfuI	GTATCC	1 cut(s)	2217
BglII	AGATCT	4 cut(s)	785, 1100, 1546, 2329
BisI	GCNGC	6 cut(s)	320, 325, 957, 1508, 1671, 1956
BlsI	GCNGC	6 cut(s)	321, 326, 958, 1509, 1672, 1957
Bme1390I	CCNGG	7 cut(s)	12, 36, 402, 506, 519, 1582, 1973
Bme18I	GGWCC	3 cut(s)	1146, 1609, 1892
BmeRI	GACNNNNNGTC	1 cut(s)	1562
BmeT110I	CYCGRG	3 cut(s)	144, 548, 1027
BmgT120I	GGNCC	3 cut(s)	1146, 1609, 1892
BmiI	GGNNCC	3 cut(s)	6, 663, 1925
BmrFI	CCNGG	7 cut(s)	12, 36, 402, 506, 519, 1582, 1973
BmsI	GCATC	7 cut(s)	598, 714, 1213, 1234, 1758, 1867, 2073
BpiI	GAAGAC	8 cut(s)	365, 375, 684, 1431, 2505, 2523, 2532, 2595
BpmI	CTGGAG	2 cut(s)	540, 2189
Bpu10I	CCTNAGC	2 cut(s)	236, 423
BpuEI	CTTGAG	3 cut(s)	379, 1108, 2069
BpuMI	CCSGG	2 cut(s)	1582, 1973
BsaBI	GATNNNNATC	1 cut(s)	2613
BsaHI	GRCGYC	1 cut(s)	903
BsaI	GGTCTC	2 cut(s)	658, 1189
BsaJI	CCNNGG	2 cut(s)	34, 549
BsaWI	WCCGGW	3 cut(s)	181, 1762, 2092
BsaXI	ACNNNNNCTCC	4 cut(s)	1196, 1226, 2534, 2564
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 2212
Bse1I	ACTGG	4 cut(s)	273, 1419, 1620, 2456
Bse3DI	GCAATG	1 cut(s)	1402
Bse8I	GATNNNNATC	1 cut(s)	2613
BseAI	TCCGGA	2 cut(s)	181, 2092
BseBI	CCWGG	5 cut(s)	12, 36, 402, 506, 519
BseDI	CCNNGG	2 cut(s)	34, 549
BseGI	GGATG	9 cut(s)	44, 207, 313, 410, 825, 908, 1939, 2404, 2462
BseJI	GATNNNNATC	1 cut(s)	2613
BseLI	CCNNNNNNNGG	2 cut(s)	40, 2212
BseMI	GCAATG	1 cut(s)	1402
BseMII	CTCAG	8 cut(s)	227, 237, 437, 671, 1639, 2001, 2219, 2374
BseNI	ACTGG	4 cut(s)	273, 1419, 1620, 2456
BseRI	GAGGAG	7 cut(s)	566, 1204, 2489, 2492, 2495, 2555, 2558
BseSI	GKGCMC	2 cut(s)	1026, 1193
BseXI	GCAGC	4 cut(s)	311, 968, 1494, 1942
BseYI	CCCAGC	2 cut(s)	596, 727
BsgI	GTGCAG	1 cut(s)	1328
Bsh1236I	CGCG	1 cut(s)	2065
BshFI	GGCC	1 cut(s)	1619
BsiHKCI	CYCGRG	3 cut(s)	144, 548, 1027
BsiSI	CCGG	5 cut(s)	182, 1581, 1763, 1973, 2093
BslFI	GGGAC	1 cut(s)	1554
BslI	CCNNNNNNNGG	2 cut(s)	40, 2212
BsmAI	GTCTC	6 cut(s)	183, 658, 796, 1189, 1453, 1628
BsmFI	GGGAC	1 cut(s)	1554
BsmI	GAATGC	1 cut(s)	2039
BsnI	GGCC	1 cut(s)	1619
Bso31I	GGTCTC	2 cut(s)	658, 1189
BsoBI	CYCGRG	3 cut(s)	144, 548, 1027
Bsp1286I	GDGCHC	2 cut(s)	1026, 1193
Bsp13I	TCCGGA	2 cut(s)	181, 2092
BspACI	CCGC	7 cut(s)	305, 319, 480, 1668, 1671, 1903, 2216
BspANI	GGCC	1 cut(s)	1619
BspCNI	CTCAG	8 cut(s)	228, 238, 436, 670, 1638, 2002, 2220, 2373
BspEI	TCCGGA	2 cut(s)	181, 2092
BspFNI	CGCG	1 cut(s)	2065
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	6, 663, 1925
BspMI	ACCTGC	2 cut(s)	1300, 1762
BspPI	GGATC	8 cut(s)	22, 392, 656, 669, 1754, 2153, 2442, 2594
BspQI	GCTCTTC	1 cut(s)	309
BspTNI	GGTCTC	2 cut(s)	658, 1189
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	1402
BsrI	ACTGG	4 cut(s)	273, 1419, 1620, 2456
BssECI	CCNNGG	2 cut(s)	34, 549
BssNI	GRCGYC	1 cut(s)	903
BssSI	CACGAG	2 cut(s)	1186, 1194
Bst2BI	CACGAG	2 cut(s)	1186, 1194
Bst2UI	CCWGG	5 cut(s)	12, 36, 402, 506, 519
Bst6I	CTCTTC	9 cut(s)	309, 596, 1056, 1356, 1361, 1599, 1677, 1684, 2532
BstACI	GRCGYC	1 cut(s)	903
BstC8I	GCNNGC	1 cut(s)	851
BstF5I	GGATG	9 cut(s)	44, 207, 313, 410, 825, 908, 1939, 2404, 2462
BstFNI	CGCG	1 cut(s)	2065
BstH2I	RGCGCY	2 cut(s)	325, 533
BstHHI	GCGC	4 cut(s)	324, 532, 1572, 2005
BstMAI	GTCTC	6 cut(s)	183, 658, 796, 1189, 1453, 1628
BstMWI	GCNNNNNNNGC	2 cut(s)	1850, 2238
BstNI	CCWGG	5 cut(s)	12, 36, 402, 506, 519
BstNSI	RCATGY	1 cut(s)	1837
BstSCI	CCNGG	7 cut(s)	10, 34, 400, 504, 517, 1580, 1971
BstSLI	GKGCMC	2 cut(s)	1026, 1193
BstUI	CGCG	1 cut(s)	2065
BstV1I	GCAGC	4 cut(s)	311, 968, 1494, 1942
BstV2I	GAAGAC	8 cut(s)	365, 375, 684, 1431, 2505, 2523, 2532, 2595
BstX2I	RGATCY	5 cut(s)	661, 785, 1100, 1546, 2329
BstXI	CCANNNNNNTGG	1 cut(s)	2169
BstYI	RGATCY	5 cut(s)	661, 785, 1100, 1546, 2329
BsuI	GTATCC	1 cut(s)	2217
BsuRI	GGCC	1 cut(s)	1619
BtgZI	GCGATG	1 cut(s)	1887
BtsCI	GGATG	9 cut(s)	44, 207, 313, 410, 825, 908, 1939, 2404, 2462
BtsI	GCAGTG	1 cut(s)	1326
BtsIMutI	CAGTG	2 cut(s)	1227, 1326
BveI	ACCTGC	2 cut(s)	1300, 1762
Cac8I	GCNNGC	1 cut(s)	851
CaiI	CAGNNNCTG	2 cut(s)	505, 873
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	4 cut(s)	324, 532, 1572, 2005
Cfr13I	GGNCC	3 cut(s)	1146, 1609, 1892
CpoI	CGGWCCG	1 cut(s)	1892
Csp6I	GTAC	4 cut(s)	970, 1003, 1096, 2275
CspCI	CAANNNNNGTGG	6 cut(s)	6, 41, 76, 111, 1777, 1812
CspI	CGGWCCG	1 cut(s)	1892
CviQI	GTAC	4 cut(s)	970, 1003, 1096, 2275
DraI	TTTAAA	1 cut(s)	496
DriI	GACNNNNNGTC	1 cut(s)	1562
Eam1104I	CTCTTC	9 cut(s)	309, 596, 1056, 1356, 1361, 1599, 1677, 1684, 2532
Eam1105I	GACNNNNNGTC	1 cut(s)	1562
EarI	CTCTTC	9 cut(s)	309, 596, 1056, 1356, 1361, 1599, 1677, 1684, 2532
Eco31I	GGTCTC	2 cut(s)	658, 1189
Eco47I	GGWCC	3 cut(s)	1146, 1609, 1892
Eco57I	CTGAAG	4 cut(s)	369, 816, 1701, 2396
Eco88I	CYCGRG	3 cut(s)	144, 548, 1027
EcoRI	GAATTC	1 cut(s)	1529
EcoRII	CCWGG	5 cut(s)	10, 34, 400, 504, 517
EcoT22I	ATGCAT	1 cut(s)	2039
FalI	AAGNNNNNCTT	6 cut(s)	122, 154, 341, 373, 2580, 2612
FaqI	GGGAC	1 cut(s)	1554
FauI	CCCGC	1 cut(s)	1896
FauNDI	CATATG	1 cut(s)	1819
FbaI	TGATCA	2 cut(s)	1170, 1785
FblI	GTMKAC	1 cut(s)	1203
Fnu4HI	GCNGC	6 cut(s)	320, 325, 957, 1508, 1671, 1956
FokI	GGATG	9 cut(s)	51, 214, 320, 417, 832, 895, 1926, 2411, 2449
Fsp4HI	GCNGC	6 cut(s)	320, 325, 957, 1508, 1671, 1956
FspBI	CTAG	5 cut(s)	353, 1268, 1277, 1439, 1544
GlaI	GCGC	4 cut(s)	323, 531, 1571, 2004
GluI	GCNGC	6 cut(s)	320, 325, 957, 1508, 1671, 1956
GsaI	CCCAGC	2 cut(s)	600, 731
GsuI	CTGGAG	2 cut(s)	540, 2189
HaeII	RGCGCY	2 cut(s)	325, 533
HaeIII	GGCC	1 cut(s)	1619
HapII	CCGG	5 cut(s)	182, 1581, 1763, 1973, 2093
HhaI	GCGC	4 cut(s)	324, 532, 1572, 2005
Hin1I	GRCGYC	1 cut(s)	903
Hin6I	GCGC	4 cut(s)	322, 530, 1570, 2003
HinP1I	GCGC	4 cut(s)	322, 530, 1570, 2003
HincII	GTYRAC	6 cut(s)	31, 1071, 1282, 2029, 2287, 2575
HindII	GTYRAC	6 cut(s)	31, 1071, 1282, 2029, 2287, 2575
HindIII	AAGCTT	1 cut(s)	763
HpaI	GTTAAC	2 cut(s)	2029, 2287
HpaII	CCGG	5 cut(s)	182, 1581, 1763, 1973, 2093
HphI	GGTGA	7 cut(s)	828, 1579, 1777, 1786, 1918, 2591, 2597
HpyAV	CCTTC	8 cut(s)	70, 199, 732, 849, 1726, 2464, 2506, 2576
HpyCH4IV	ACGT	3 cut(s)	903, 2340, 2571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1850, 2238
HpySE526I	ACGT	3 cut(s)	903, 2340, 2571
Hsp92I	GRCGYC	1 cut(s)	903
HspAI	GCGC	4 cut(s)	322, 530, 1570, 2003
Kpn2I	TCCGGA	2 cut(s)	181, 2092
Ksp22I	TGATCA	2 cut(s)	1170, 1785
KspAI	GTTAAC	2 cut(s)	2029, 2287
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	6 cut(s)	10, 43, 550, 632, 2268, 2448
Lsp1109I	GCAGC	4 cut(s)	311, 968, 1494, 1942
LweI	GCATC	7 cut(s)	598, 714, 1213, 1234, 1758, 1867, 2073
MaeI	CTAG	5 cut(s)	353, 1268, 1277, 1439, 1544
MaeII	ACGT	3 cut(s)	903, 2340, 2571
MbiI	CCGCTC	1 cut(s)	319
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	5 cut(s)	661, 785, 1100, 1546, 2329
MhlI	GDGCHC	2 cut(s)	1026, 1193
MluI	ACGCGT	1 cut(s)	2063
MlyI	GAGTC	3 cut(s)	379, 1039, 1381
MmeI	TCCRAC	2 cut(s)	728, 1901
Mph1103I	ATGCAT	1 cut(s)	2039
MroI	TCCGGA	2 cut(s)	181, 2092
MroXI	GAANNNNTTC	2 cut(s)	1416, 1529
MslI	CAYNNNNRTG	2 cut(s)	1872, 2167
MspA1I	CMGCKG	2 cut(s)	1036, 2374
MspI	CCGG	5 cut(s)	182, 1581, 1763, 1973, 2093
MspR9I	CCNGG	7 cut(s)	12, 36, 402, 506, 519, 1582, 1973
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	2039
MvaI	CCWGG	5 cut(s)	12, 36, 402, 506, 519
MvnI	CGCG	1 cut(s)	2065
MwoI	GCNNNNNNNGC	2 cut(s)	1850, 2238
NciI	CCSGG	2 cut(s)	1582, 1973
NdeI	CATATG	1 cut(s)	1819
NlaIV	GGNNCC	3 cut(s)	6, 663, 1925
NmuCI	GTSAC	5 cut(s)	170, 834, 904, 1659, 2621
NsiI	ATGCAT	1 cut(s)	2039
NspI	RCATGY	1 cut(s)	1837
PaeR7I	CTCGAG	2 cut(s)	144, 1027
PagI	TCATGA	1 cut(s)	691
PaqCI	CACCTGC	1 cut(s)	1762
PciI	ACATGT	1 cut(s)	1833
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	1290, 2463
PctI	GAATGC	1 cut(s)	2039
PdmI	GAANNNNTTC	2 cut(s)	1416, 1529
PfeI	GAWTC	8 cut(s)	211, 770, 1476, 1485, 1777, 2070, 2089, 2561
PflMI	CCANNNNNTGG	1 cut(s)	2212
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	6 cut(s)	321, 326, 958, 1509, 1672, 1957
PleI	GAGTC	3 cut(s)	378, 1038, 1381
PpsI	GAGTC	3 cut(s)	378, 1038, 1381
PscI	ACATGT	1 cut(s)	1833
Psp1406I	AACGTT	1 cut(s)	2571
Psp6I	CCWGG	5 cut(s)	10, 34, 400, 504, 517
PspFI	CCCAGC	2 cut(s)	596, 727
PspGI	CCWGG	5 cut(s)	10, 34, 400, 504, 517
PspN4I	GGNNCC	3 cut(s)	6, 663, 1925
PspPI	GGNCC	3 cut(s)	1146, 1609, 1892
PspXI	VCTCGAGB	2 cut(s)	144, 1027
PstNI	CAGNNNCTG	2 cut(s)	505, 873
PsuI	RGATCY	5 cut(s)	661, 785, 1100, 1546, 2329
PvuII	CAGCTG	2 cut(s)	1036, 2374
RsaI	GTAC	4 cut(s)	971, 1004, 1097, 2276
RsaNI	GTAC	4 cut(s)	970, 1003, 1096, 2275
RseI	CAYNNNNRTG	2 cut(s)	1872, 2167
Rsr2I	CGGWCCG	1 cut(s)	1892
RsrII	CGGWCCG	1 cut(s)	1892
SapI	GCTCTTC	1 cut(s)	309
SatI	GCNGC	6 cut(s)	320, 325, 957, 1508, 1671, 1956
Sau96I	GGNCC	3 cut(s)	1146, 1609, 1892
SchI	GAGTC	3 cut(s)	379, 1039, 1381
ScrFI	CCNGG	7 cut(s)	12, 36, 402, 506, 519, 1582, 1973
SduI	GDGCHC	2 cut(s)	1026, 1193
SfaNI	GCATC	7 cut(s)	598, 714, 1213, 1234, 1758, 1867, 2073
Sfr274I	CTCGAG	2 cut(s)	144, 1027
SinI	GGWCC	3 cut(s)	1146, 1609, 1892
SlaI	CTCGAG	2 cut(s)	144, 1027
SmiMI	CAYNNNNRTG	2 cut(s)	1872, 2167
SmlI	CTYRAG	5 cut(s)	144, 358, 1027, 1087, 2048
SmoI	CTYRAG	5 cut(s)	144, 358, 1027, 1087, 2048
SpeI	ACTAGT	1 cut(s)	1276
SsiI	CCGC	7 cut(s)	305, 319, 480, 1668, 1671, 1903, 2216
SspMI	CTAG	5 cut(s)	353, 1268, 1277, 1439, 1544
StyD4I	CCNGG	7 cut(s)	10, 34, 400, 504, 517, 1580, 1971
TaiI	ACGT	3 cut(s)	906, 2343, 2574
TaqI	TCGA	5 cut(s)	145, 592, 845, 1028, 1217
TaqII	GACCGA	1 cut(s)	369
TatI	WGTACW	2 cut(s)	969, 1095
TauI	GCSGC	2 cut(s)	322, 1673
TfiI	GAWTC	8 cut(s)	211, 770, 1476, 1485, 1777, 2070, 2089, 2561
TscAI	CASTG	2 cut(s)	1234, 1333
TseFI	GTSAC	5 cut(s)	170, 834, 904, 1659, 2621
TseI	GCWGC	4 cut(s)	324, 956, 1507, 1955
Tsp45I	GTSAC	5 cut(s)	170, 834, 904, 1659, 2621
TspGWI	ACGGA	4 cut(s)	82, 1020, 1905, 2141
TspRI	CASTG	2 cut(s)	1234, 1333
Van91I	CCANNNNNTGG	1 cut(s)	2212
VpaK11BI	GGWCC	3 cut(s)	1146, 1609, 1892
XapI	RAATTY	5 cut(s)	923, 961, 1375, 1442, 1529
XbaI	TCTAGA	1 cut(s)	1267
XceI	RCATGY	1 cut(s)	1837
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2169, 2306
XhoI	CTCGAG	2 cut(s)	144, 1027
XmiI	GTMKAC	1 cut(s)	1203
XmnI	GAANNNNTTC	2 cut(s)	1416, 1529
XspI	CTAG	5 cut(s)	353, 1268, 1277, 1439, 1544
ZraI	GACGTC	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	2039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.