Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004891

Physical Location & Seq

Genomic Coordinates Forward (+)

10448086 .. 10452654

Gene Structure 4569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1136600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGCGCTCCTCTGGGCTTGTTGACCCTGGATGGGACCATGGTGTTGCTCAAGATGAGAGGAAGAAAAAGGTTAAATGCAATTACTGTGGAAAAATAGTTAGTGGTGGAATATACAGATTGAAGCAACATTTAGCCCGAGTTTCTGGAGAAGTTACTTATTGTGATAAAGCTCCGGACGATGTATACTTGAGTATGAAAACAAATATGGAAGGAAGTCGTTCTCATAAGAAACCTAGGCTTTCCGATGATATTGGCCAAGCATATTTGAATTTTCAATCTAATGATGACGAAGAAGATGTGCAGGTTGGCTATAGAAGCAAAGGAAAGCAATTGGTGGGTGAGAGGAATTTAGCTATGAAATTGACTCCTCTTCGGTCGTTAGGGTATGTTGACCCTGGGTGGGAACACGGCGTTGCTCAGGATGAGAAAAAGAAAAAGGTGAAATGCAATTATTGCGAGAAAATAGTTAGTGGTGGTATCAATCGGTTTAAACAACATTTAGCTAGAATTCCTGGAGAAGTAGCACCTTGTAAACATGCTCCTGACGATGTCTATGTTAAAATAAAAGAGAATATGAAATGGCATCGTACTGGAAGAAGACAGAGACAACCTGATTCCAAGGACACGTCAAATTTTGATCCTCTGTCAGATAATGAAGACCAAGACGATGACCAAATGGAAGCTGTTCTGCCACATATGAGCCAGGAAAGATTGATCGATGGTGATAGGAGATTGGGCCAAAATGTGAGAAATACATTCTTGTCGCTGCCCAGTACTGGTTCTGAACCATTATTTAAAAGATCAAGGCTCGATTCCCTGTTCGTGACAGCTCCTAAGAGTTTGCCACCACAATCTTACAAGCAAGGAAGGGTCAGAACAATGTCAAATAAAATTTCCCACAAGGAAGTTATTTCTGGAATTTGCAAATTCTTTTACCATGCAGGAGTTCCTCAACAAGCAGCAGACTCCTTATACTTTCATAAGATGCTGGAATTGGTTGGCCAATATGGGCAGGGTTTGGTAGCACCTCCAAGTCAATTAATATCTGGTCGATTTCTACAAGAGGAAATTGCAACCATTAGAAACTACCTGGCTGAGTATAAGGCATCTTGGGCAACCACTGGCTGTTCTATCATGGCTGACAGTTGGAGAGACGCTGAGGGTAGAATATTGATAAACTTTTTGGCTTCCAGTCCAAATGGTGTGTACTTTGTTTCTTCAGTTGATGCCACCGAAATAGTTGAAGATGCTTTGAATTTGTTTATGTTGCTGGACAAAGTCGTTGAAGAGATGGGGGAGGAAAATGTAATTCAGGTAATCACTCCAAATACTCCTAGTTATAAAGCTGCTGGAAAGATGCTTGAGGAGAAGAGAAAGAATTTATTCTGGACCCCATGTGCCACCAGTTGTATCGATCAAATGCTTGAAGATTTTTTGAGGATAAGATGTGTAGCAGAGTGCATGGAGACAGGCCAAAAAGTTACGAAGCTCATTTACAACCATGTTTGGTTGTTAAATTTTATGAAGAGTGATTTTACGCAGGGGAAGGAACTTTTGAGACCATCTATTACCCGGTTTGCTTCTAGCTTTGCTACCTTACAAAGCTTGTTGGACCATAAGACTGGTCTTAAAAGAATGTTTCAATCAAACAAATGGATTTCATCACAGTGCTCCAAATCATTTGAGGGAAAACAGGTGGAAAATATCGTCTTAAATGCTGCATTTTGGAAGAAGTTACAGTTTGTTAGGAATTCAGTGAACCCGATAATGCAAATTCTTCAAAAGGTTGAGAGTGGTGACTGCTTGTCAATGTCATCTATATACAATGACATGTGCAGGGCTAAGATTGCAATAAAAGCCATTCATGGTAATAAAGTCCATAAATATGAACCATTTTGGAGCGTTATAGAAAGTCATTGGAACTCGCTGTTCTACCACCCCGTATATGTAGCTGCTTACTACTTAAATCCATCATACAGATATCGACCTGATTTTATGGCACATACTGAGGTGATGCGTGGACTTAACGAATGCATTGTTCGGCTGGAGCCAGACCATTCAAATAGGATTTCTGCATCTATGCAGATTTCTGATTACAATTCTGCTAAAGCTGATTTTGGAACCGAATTGGCAATCAGTACAAGAACAGAGCTTGATCCAGCCGCATGGTGGCAGCAACATGGGATAAGTTGCTTGGAGCTGCAGCGTATAGCTGTGCGTATATTGAGTCAGACATGCTCTTCTTTTGGGTGTGAGCATAACTGGAGTATATACGATCAATTGTACAGTCTAAGAAGTAATCGTTTAGCCCAAAAAAGATTAAACGAGCTCATCTACGTTCATTACAATTTGCGTCTTAGAGAACAGCAATTACGAAGAAGGCCGGAAAATTCAATCTCCCTCGACAATGTGCTGTTAGATCGGTTGCTAGATGACTGGATTGTAGATGCTGCGGAAAATGACTTGCTAGAAAATGAGGTCCTTTACAACGAAATCGAACAGGTTGATGAATACGAGAATGATCTTGTTGATTACAAATGTGGAATGGCAAATGGAGAGACGAGGAATGGATCCATTGAGCTGGTAACCTTGGCTGATGGAAATGTCAATCCAGCCAATGCTGGTGTTGCCACCGATGATGATGACGAGGAGGAGGAGGAGGAGGCGGATGGCGATATGAACTTTTTCCATGATGACATGAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

903

Amino Acids

102.97

Weight (kDa)

5.88

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	11 - 46	2.2e-06	BED zinc finger
zf-BED	PF02892	134 - 169	8.2e-07	BED zinc finger
DUF659	PF04937	344 - 494	8.7e-57	Domain of unknown function (DUF659)
Dimer_Tnp_hAT	PF05699	714 - 784	1.4e-11	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17450 AT3G17450
fragaria_vesca	FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491
malus_domestica	MD13G1139200.v1.1 MD16G1136600.v1.1
prunus_persica	Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1
pyrus_communis	pycom13g12110 pycom16g12020 pycom16g12030 pycom16g12040
rosa_chinensis	RchiOBHm_Chr4g0427461
rosa_laevigata	RLG00000007243
rosa_roxburghii	Rroxscaffold_5G00369110
rosa_rugosa	Rorug04G0208700
rosa_samantha	Rh4AG274500 Rh4BG280200 Rh4CG295200 Rh4DG277700
rosa_wichuraiana	Rw4G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1341
Acc36I	ACCTGC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	3 cut(s)	2163, 2453, 2666
AclWI	GGATC	4 cut(s)	632, 2150, 2565, 2578
AcoI	YGGCCR	2 cut(s)	253, 1000
AcuI	CTGAAG	1 cut(s)	1203
AfaI	GTAC	5 cut(s)	589, 775, 1208, 2140, 2285
AfiI	CCNNNNNNNGG	4 cut(s)	31, 400, 776, 2169
AflIII	ACRYGT	2 cut(s)	624, 1830
AhdI	GACNNNNNGTC	1 cut(s)	1804
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	5 cut(s)	25, 394, 511, 702, 1089
Alw21I	GWGCWC	2 cut(s)	1673, 2331
Alw26I	GTCTC	5 cut(s)	598, 1146, 1460, 1552, 2552
AlwI	GGATC	4 cut(s)	632, 2150, 2565, 2578
Ama87I	CYCGRG	1 cut(s)	135
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	5 cut(s)	253, 736, 1000, 1471, 2381
ApeKI	GCWGC	9 cut(s)	766, 959, 1346, 1718, 1952, 2173, 2200, 2203, 2450
AseI	ATTAAT	1 cut(s)	1040
Asp700I	GAANNNNTTC	4 cut(s)	217, 684, 1382, 2684
AspA2I	CCTAGG	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	34, 736, 1389, 1612, 2479
AsuC2I	CCSGG	1 cut(s)	1573
AsuHPI	GGTGA	5 cut(s)	350, 451, 734, 1808, 2023
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	34, 1389, 1612, 2479
AvrII	CCTAGG	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	255, 1002
BamHI	GGATCC	1 cut(s)	2570
BanII	GRGCYC	1 cut(s)	2331
BarI	GAAGNNNNNNTAC	2 cut(s)	1478, 1510
BbsI	GAAGAC	2 cut(s)	604, 663
Bbv12I	GWGCWC	2 cut(s)	1673, 2331
BbvCI	CCTCAGC	1 cut(s)	1158
BbvI	GCAGC	9 cut(s)	753, 971, 1333, 1705, 1939, 2185, 2187, 2215, 2437
BccI	CCATC	7 cut(s)	24, 713, 1285, 1570, 1978, 2591, 2663
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	5 cut(s)	27, 396, 513, 704, 1091
BcnI	CCSGG	1 cut(s)	1573
BcoDI	GTCTC	5 cut(s)	598, 1146, 1460, 1552, 2552
BfaI	CTAG	6 cut(s)	234, 504, 1335, 1584, 2429, 2468
BfmI	CTRYAG	2 cut(s)	310, 2201
BfuAI	ACCTGC	1 cut(s)	292
BlnI	CCTAGG	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	6 cut(s)	27, 396, 513, 704, 1091, 1573
Bme18I	GGWCC	4 cut(s)	34, 1389, 1612, 2479
BmeRI	GACNNNNNGTC	1 cut(s)	1804
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	627
BmgT120I	GGNCC	5 cut(s)	34, 736, 1389, 1612, 2479
BmiI	GGNNCC	5 cut(s)	35, 1391, 2049, 2122, 2572
BmrFI	CCNGG	6 cut(s)	27, 396, 513, 704, 1091, 1573
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	9 cut(s)	592, 975, 1115, 1216, 1237, 1347, 2004, 2084, 2437
BmuI	ACTGGG	1 cut(s)	765
BpiI	GAAGAC	2 cut(s)	604, 663
BpmI	CTGGAG	4 cut(s)	165, 534, 2066, 2284
Bpu10I	CCTNAGC	2 cut(s)	417, 1158
BpuEI	CTTGAG	3 cut(s)	33, 208, 1382
BpuMI	CCSGG	1 cut(s)	1573
Bsa29I	ATCGAT	2 cut(s)	717, 1413
BsaI	GGTCTC	1 cut(s)	1552
BsaJI	CCNNGG	7 cut(s)	25, 37, 233, 394, 395, 618, 2589
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 400, 776, 2169
Bse1I	ACTGG	9 cut(s)	595, 771, 781, 1126, 1191, 1404, 1627, 2267, 2441
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	5 cut(s)	27, 396, 513, 704, 1091
BseCI	ATCGAT	2 cut(s)	717, 1413
BseDI	CCNNGG	7 cut(s)	25, 37, 233, 394, 395, 618, 2589
BseGI	GGATG	3 cut(s)	35, 427, 2674
BseLI	CCNNNNNNNGG	4 cut(s)	31, 400, 776, 2169
BseMII	CTCAG	4 cut(s)	431, 1086, 1149, 1998
BseNI	ACTGG	9 cut(s)	595, 771, 781, 1126, 1191, 1404, 1627, 2267, 2441
BseRI	GAGGAG	7 cut(s)	357, 1379, 2663, 2666, 2669, 2672, 2675
BseXI	GCAGC	9 cut(s)	753, 971, 1333, 1705, 1939, 2185, 2187, 2215, 2437
BsgI	GTGCAG	2 cut(s)	320, 1855
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	5 cut(s)	255, 738, 1002, 1473, 2383
BshVI	ATCGAT	2 cut(s)	717, 1413
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	1673, 2331
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	173, 1573, 2384
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	4 cut(s)	31, 400, 776, 2169
BsmAI	GTCTC	5 cut(s)	598, 1146, 1460, 1552, 2552
BsmBI	CGTCTC	2 cut(s)	1146, 2552
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	2036
BsnI	GGCC	5 cut(s)	255, 738, 1002, 1473, 2383
Bso31I	GGTCTC	1 cut(s)	1552
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	1673, 2331
Bsp13I	TCCGGA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	2283
Bsp143I	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	3 cut(s)	2163, 2453, 2666
BspANI	GGCC	5 cut(s)	255, 738, 1002, 1473, 2383
BspCNI	CTCAG	4 cut(s)	430, 1087, 1150, 1999
BspDI	ATCGAT	2 cut(s)	717, 1413
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	5 cut(s)	35, 1391, 2049, 2122, 2572
BspMAI	CTGCAG	1 cut(s)	2205
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	4 cut(s)	632, 2150, 2565, 2578
BspQI	GCTCTTC	1 cut(s)	2245
BspTNI	GGTCTC	1 cut(s)	1552
BsrGI	TGTACA	1 cut(s)	2283
BsrI	ACTGG	9 cut(s)	595, 771, 781, 1126, 1191, 1404, 1627, 2267, 2441
BssECI	CCNNGG	7 cut(s)	25, 37, 233, 394, 395, 618, 2589
BssMI	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
BssNAI	GTATAC	1 cut(s)	184
BssT1I	CCWWGG	4 cut(s)	37, 233, 618, 2589
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	5 cut(s)	27, 396, 513, 704, 1091
Bst4CI	ACNGT	5 cut(s)	86, 1145, 1668, 1740, 2288
Bst6I	CTCTTC	5 cut(s)	375, 1281, 1364, 1520, 2245
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	2283
BstDEI	CTNAG	8 cut(s)	417, 834, 1095, 1158, 1842, 2007, 2291, 2357
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	2584
BstF5I	GGATG	3 cut(s)	35, 427, 2674
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	9 cut(s)	640, 717, 803, 1417, 2158, 2278, 2422, 2524, 2573
BstMAI	GTCTC	5 cut(s)	598, 1146, 1460, 1552, 2552
BstMBI	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	6 cut(s)	315, 453, 1112, 1847, 1856, 2627
BstNI	CCWGG	5 cut(s)	27, 396, 513, 704, 1091
BstNSI	RCATGY	3 cut(s)	539, 1834, 2238
BstPI	GGTNACC	1 cut(s)	2584
BstSCI	CCNGG	6 cut(s)	25, 394, 511, 702, 1089, 1571
BstSFI	CTRYAG	2 cut(s)	310, 2201
BstV1I	GCAGC	9 cut(s)	753, 971, 1333, 1705, 1939, 2185, 2187, 2215, 2437
BstV2I	GAAGAC	2 cut(s)	604, 663
BstX2I	RGATCY	1 cut(s)	2570
BstXI	CCANNNNNNTGG	3 cut(s)	1622, 2166, 2581
BstYI	RGATCY	1 cut(s)	2570
BstZ17I	GTATAC	1 cut(s)	184
Bsu15I	ATCGAT	2 cut(s)	717, 1413
BsuRI	GGCC	5 cut(s)	255, 738, 1002, 1473, 2383
BsuTUI	ATCGAT	2 cut(s)	717, 1413
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	35, 427, 2674
BtsIMutI	CAGTG	3 cut(s)	1119, 1673, 1761
BveI	ACCTGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	34, 736, 1389, 1612, 2479
ClaI	ATCGAT	2 cut(s)	717, 1413
CseI	GACGC	2 cut(s)	1163, 2342
Csp6I	GTAC	5 cut(s)	588, 774, 1207, 2139, 2284
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviQI	GTAC	5 cut(s)	588, 774, 1207, 2139, 2284
DdeI	CTNAG	8 cut(s)	417, 834, 1095, 1158, 1842, 2007, 2291, 2357
DpnI	GATC	9 cut(s)	639, 716, 802, 1416, 2157, 2277, 2421, 2523, 2572
DpnII	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
DraI	TTTAAA	2 cut(s)	490, 796
DriI	GACNNNNNGTC	1 cut(s)	1804
EaeI	YGGCCR	2 cut(s)	253, 1000
Eam1104I	CTCTTC	5 cut(s)	375, 1281, 1364, 1520, 2245
Eam1105I	GACNNNNNGTC	1 cut(s)	1804
EarI	CTCTTC	5 cut(s)	375, 1281, 1364, 1520, 2245
EciI	GGCGGA	1 cut(s)	2681
Ecl136II	GAGCTC	1 cut(s)	2329
Eco130I	CCWWGG	4 cut(s)	37, 233, 618, 2589
Eco24I	GRGCYC	1 cut(s)	2331
Eco31I	GGTCTC	1 cut(s)	1552
Eco32I	GATATC	1 cut(s)	1982
Eco47I	GGWCC	4 cut(s)	34, 1389, 1612, 2479
Eco53kI	GAGCTC	1 cut(s)	2329
Eco57I	CTGAAG	1 cut(s)	1203
Eco88I	CYCGRG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	2584
EcoICRI	GAGCTC	1 cut(s)	2329
EcoO109I	RGGNCCY	1 cut(s)	2479
EcoO65I	GGTNACC	1 cut(s)	2584
EcoRI	GAATTC	2 cut(s)	507, 1750
EcoRII	CCWGG	5 cut(s)	25, 394, 511, 702, 1089
EcoRV	GATATC	1 cut(s)	1982
EcoT14I	CCWWGG	4 cut(s)	37, 233, 618, 2589
EcoT22I	ATGCAT	1 cut(s)	2036
EcoT38I	GRGCYC	1 cut(s)	2331
ErhI	CCWWGG	4 cut(s)	37, 233, 618, 2589
Esp3I	CGTCTC	2 cut(s)	1146, 2552
FaqI	GGGAC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	183
FokI	GGATG	3 cut(s)	42, 434, 2681
FriOI	GRGCYC	1 cut(s)	2331
FspBI	CTAG	6 cut(s)	234, 504, 1335, 1584, 2429, 2468
GlaI	GCGC	1 cut(s)	5
GsuI	CTGGAG	4 cut(s)	165, 534, 2066, 2284
HaeIII	GGCC	5 cut(s)	255, 738, 1002, 1473, 2383
HapII	CCGG	3 cut(s)	173, 1573, 2384
HgaI	GACGC	2 cut(s)	1163, 2342
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	22, 391
HindII	GTYRAC	2 cut(s)	22, 391
HindIII	AAGCTT	1 cut(s)	1603
HinfI	GANTC	5 cut(s)	364, 614, 812, 965, 2227
HpaII	CCGG	3 cut(s)	173, 1573, 2384
HphI	GGTGA	5 cut(s)	350, 451, 734, 1808, 2023
Hpy166II	GTNNAC	7 cut(s)	22, 184, 391, 533, 1207, 1759, 2021
Hpy188I	TCNGA	6 cut(s)	244, 649, 784, 875, 2092, 2232
Hpy188III	TCNNGA	8 cut(s)	50, 144, 173, 419, 542, 823, 915, 1387
Hpy8I	GTNNAC	7 cut(s)	22, 184, 391, 533, 1207, 1759, 2021
HpyAV	CCTTC	4 cut(s)	203, 861, 1540, 2373
HpyCH4III	ACNGT	5 cut(s)	86, 1145, 1668, 1740, 2288
HpyCH4IV	ACGT	2 cut(s)	626, 2337
HpyF10VI	GCNNNNNNNGC	6 cut(s)	315, 453, 1112, 1847, 1856, 2627
HpyF3I	CTNAG	8 cut(s)	417, 834, 1095, 1158, 1842, 2007, 2291, 2357
HpySE526I	ACGT	2 cut(s)	626, 2337
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
LguI	GCTCTTC	1 cut(s)	2245
LmnI	GCTCC	8 cut(s)	11, 175, 544, 835, 1676, 1899, 2047, 2197
Lsp1109I	GCAGC	9 cut(s)	753, 971, 1333, 1705, 1939, 2185, 2187, 2215, 2437
LweI	GCATC	9 cut(s)	592, 975, 1115, 1216, 1237, 1347, 2004, 2084, 2437
MaeI	CTAG	6 cut(s)	234, 504, 1335, 1584, 2429, 2468
MaeII	ACGT	2 cut(s)	626, 2337
MaeIII	GTNAC	6 cut(s)	151, 823, 1480, 1734, 1796, 2584
MalI	GATC	9 cut(s)	639, 716, 802, 1416, 2157, 2277, 2421, 2523, 2572
MboI	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
MfeI	CAATTG	2 cut(s)	329, 2279
MflI	RGATCY	1 cut(s)	2570
MhlI	GDGCHC	2 cut(s)	1673, 2331
MlsI	TGGCCA	2 cut(s)	255, 1002
MluNI	TGGCCA	2 cut(s)	255, 1002
MlyI	GAGTC	3 cut(s)	358, 959, 2236
MmeI	TCCRAC	2 cut(s)	1127, 1590
Mox20I	TGGCCA	2 cut(s)	255, 1002
Mph1103I	ATGCAT	1 cut(s)	2036
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	4 cut(s)	217, 684, 1382, 2684
MscI	TGGCCA	2 cut(s)	255, 1002
MslI	CAYNNNNRTG	2 cut(s)	1666, 1884
Msp20I	TGGCCA	2 cut(s)	255, 1002
MspI	CCGG	3 cut(s)	173, 1573, 2384
MspR9I	CCNGG	6 cut(s)	27, 396, 513, 704, 1091, 1573
MssI	GTTTAAAC	1 cut(s)	490
MunI	CAATTG	2 cut(s)	329, 2279
Mva1269I	GAATGC	1 cut(s)	2036
MvaI	CCWGG	5 cut(s)	27, 396, 513, 704, 1091
MwoI	GCNNNNNNNGC	6 cut(s)	315, 453, 1112, 1847, 1856, 2627
NciI	CCSGG	1 cut(s)	1573
NcoI	CCATGG	1 cut(s)	37
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
NlaIV	GGNNCC	5 cut(s)	35, 1391, 2049, 2122, 2572
NmuCI	GTSAC	2 cut(s)	823, 1796
NsiI	ATGCAT	1 cut(s)	2036
NspI	RCATGY	3 cut(s)	539, 1834, 2238
PasI	CCCWGGG	1 cut(s)	395
PciI	ACATGT	1 cut(s)	1830
PciSI	GCTCTTC	1 cut(s)	2245
PctI	GAATGC	1 cut(s)	2036
PdmI	GAANNNNTTC	4 cut(s)	217, 684, 1382, 2684
PfeI	GAWTC	2 cut(s)	614, 812
PflFI	GACNNNGTC	2 cut(s)	548, 1277
PfoI	TCCNGGA	1 cut(s)	511
PleI	GAGTC	3 cut(s)	358, 959, 2235
PmeI	GTTTAAAC	1 cut(s)	490
PpsI	GAGTC	3 cut(s)	358, 959, 2235
PpuMI	RGGWCCY	1 cut(s)	2479
PscI	ACATGT	1 cut(s)	1830
PshBI	ATTAAT	1 cut(s)	1040
PsiI	TTATAA	1 cut(s)	1341
Psp124BI	GAGCTC	1 cut(s)	2331
Psp5II	RGGWCCY	1 cut(s)	2479
Psp6I	CCWGG	5 cut(s)	25, 394, 511, 702, 1089
PspEI	GGTNACC	1 cut(s)	2584
PspGI	CCWGG	5 cut(s)	25, 394, 511, 702, 1089
PspN4I	GGNNCC	5 cut(s)	35, 1391, 2049, 2122, 2572
PspPI	GGNCC	5 cut(s)	34, 736, 1389, 1612, 2479
PspPPI	RGGWCCY	1 cut(s)	2479
PsrI	GAACNNNNNNTAC	2 cut(s)	2355, 2387
PstI	CTGCAG	1 cut(s)	2205
PsuI	RGATCY	1 cut(s)	2570
PsyI	GACNNNGTC	2 cut(s)	548, 1277
RsaI	GTAC	5 cut(s)	589, 775, 1208, 2140, 2285
RsaNI	GTAC	5 cut(s)	588, 774, 1207, 2139, 2284
RseI	CAYNNNNRTG	2 cut(s)	1666, 1884
SacI	GAGCTC	1 cut(s)	2331
SapI	GCTCTTC	1 cut(s)	2245
Sau3AI	GATC	9 cut(s)	637, 714, 800, 1414, 2155, 2275, 2419, 2521, 2570
Sau96I	GGNCC	5 cut(s)	34, 736, 1389, 1612, 2479
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	3 cut(s)	358, 959, 2236
ScrFI	CCNGG	6 cut(s)	27, 396, 513, 704, 1091, 1573
SduI	GDGCHC	2 cut(s)	1673, 2331
SfaNI	GCATC	9 cut(s)	592, 975, 1115, 1216, 1237, 1347, 2004, 2084, 2437
SfcI	CTRYAG	2 cut(s)	310, 2201
SinI	GGWCC	4 cut(s)	34, 1389, 1612, 2479
SmiMI	CAYNNNNRTG	2 cut(s)	1666, 1884
SmlI	CTYRAG	3 cut(s)	48, 187, 1361
SmoI	CTYRAG	3 cut(s)	48, 187, 1361
SsiI	CCGC	3 cut(s)	2163, 2453, 2666
SspI	AATATT	1 cut(s)	1170
SspMI	CTAG	6 cut(s)	234, 504, 1335, 1584, 2429, 2468
SstI	GAGCTC	1 cut(s)	2331
StyD4I	CCNGG	6 cut(s)	25, 394, 511, 702, 1089, 1571
StyI	CCWWGG	4 cut(s)	37, 233, 618, 2589
TaaI	ACNGT	5 cut(s)	86, 1145, 1668, 1740, 2288
TaiI	ACGT	2 cut(s)	629, 2340
TaqI	TCGA	7 cut(s)	717, 810, 1051, 1413, 1984, 2403, 2496
TaqII	GACCGA	1 cut(s)	363
TatI	WGTACW	4 cut(s)	773, 1206, 2138, 2283
TauI	GCSGC	1 cut(s)	2165
TfiI	GAWTC	2 cut(s)	614, 812
TscAI	CASTG	3 cut(s)	1126, 1673, 1761
TseFI	GTSAC	2 cut(s)	823, 1796
TseI	GCWGC	9 cut(s)	766, 959, 1346, 1718, 1952, 2173, 2200, 2203, 2450
Tsp45I	GTSAC	2 cut(s)	823, 1796
TspRI	CASTG	3 cut(s)	1126, 1673, 1761
Tth111I	GACNNNGTC	2 cut(s)	548, 1277
VpaK11BI	GGWCC	4 cut(s)	34, 1389, 1612, 2479
VspI	ATTAAT	1 cut(s)	1040
XceI	RCATGY	3 cut(s)	539, 1834, 2238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2166
XmaJI	CCTAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	4 cut(s)	217, 684, 1382, 2684
XspI	CTAG	6 cut(s)	234, 504, 1335, 1584, 2429, 2468
ZrmI	AGTACT	1 cut(s)	775
Zsp2I	ATGCAT	1 cut(s)	2036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.