Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004891

Physical Location & Seq

Genomic Coordinates Forward (+)

8395452 .. 8396106

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCAAATAAAATTTCCCACAAGGAAGTTATTTCTGGAATTTGCAAATTCTTTTACCATGCAGGAGTTCCTCAACAAGCAGCAGACTCCTTATACTTTCATAAGATGCTGGAATTGGTTGGCCAATATGGGCAGGGTTTGGTAGCACCTCCAAGTCAATTAATATCTGGTCGGTTTCTACAAGAGGAAATTGCAACCATTAGAAACTACCTGGCTGAGTATAAGGCATCTTGGGCAACCACTGGCTGTTCTATCATGGCTGACAGTTGGAGAGACACAGAGGGTAGAATATTGATAAACATTTTGGCTTCCGGTCCAAATGGTGTGTACTTTGTTTCTTCAGTTGATGCCACTGAAATAGTTGAAGATGCTTTGAATTTGTTTATGTTGCTGGACAAAGTCGTTGAAGAGATGGGGGAGGAAAACGTAGTTCAGGTAATCACTCCAAATACTCCTAGTTATAAAGCTGCTGGAAAGATGCTTGAGGAGAAGAGAAAGAATTTATTCTGGACCCCATGTGCCATCAGATCATCCAAAGTATCGATCAAATGCTTGAAGATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

189

Amino Acids

20.95

Weight (kDa)

6.31

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17450 AT3G17450
fragaria_vesca	FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491
malus_domestica	MD13G1139200.v1.1 MD16G1136600.v1.1
prunus_persica	Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1
pyrus_communis	pycom13g12110 pycom16g12020 pycom16g12030 pycom16g12040
rosa_chinensis	RchiOBHm_Chr4g0427461
rosa_laevigata	RLG00000007243
rosa_roxburghii	Rroxscaffold_5G00369110
rosa_rugosa	Rorug04G0208700
rosa_samantha	Rh4AG274500 Rh4BG280200 Rh4CG295200 Rh4DG277700
rosa_wichuraiana	Rw4G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	5 cut(s)	12, 39, 47, 376, 499
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	365, 376, 407, 556
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	80, 467
ApoI	RAATTY	5 cut(s)	12, 39, 47, 376, 499
AseI	ATTAAT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	314, 510
AvaII	GGWCC	2 cut(s)	314, 510
BalI	TGGCCA	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	92, 454
BccI	CCATC	2 cut(s)	406, 530
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	2 cut(s)	81, 468
BlsI	GCNGC	2 cut(s)	82, 469
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	314, 510
BmgT120I	GGNCC	2 cut(s)	314, 510
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	5 cut(s)	96, 236, 337, 358, 468
BpuEI	CTTGAG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	212
BseCI	ATCGAT	1 cut(s)	542
BseGI	GGATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	92, 454
BshFI	GGCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	527, 543
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	542
BspLI	GGNNCC	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	527, 543
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	402, 485
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	2 cut(s)	530, 546
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	527, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	92, 454
Bsu15I	ATCGAT	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	2 cut(s)	240, 351
Cfr13I	GGNCC	2 cut(s)	314, 510
ClaI	ATCGAT	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	3 cut(s)	59, 256, 516
CviJI	RGCY	6 cut(s)	123, 215, 246, 260, 308, 467
CviKI_1	RGCY	6 cut(s)	123, 215, 246, 260, 308, 467
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	529, 545
DpnII	GATC	2 cut(s)	527, 543
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	402, 485
EarI	CTCTTC	2 cut(s)	402, 485
Eco47I	GGWCC	2 cut(s)	314, 510
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	62, 259, 519
FaiI	YATR	9 cut(s)	60, 94, 102, 129, 222, 257, 386, 462, 517
FatI	CATG	3 cut(s)	58, 255, 515
Fnu4HI	GCNGC	2 cut(s)	81, 468
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	81, 468
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	2 cut(s)	81, 468
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	3 cut(s)	62, 259, 519
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	527
Hpy188III	TCNNGA	2 cut(s)	36, 508
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	45, 62, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	62, 259, 519
Kzo9I	GATC	2 cut(s)	527, 543
Lsp1109I	GCAGC	2 cut(s)	92, 454
LweI	GCATC	5 cut(s)	96, 236, 337, 358, 468
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	426
MalI	GATC	2 cut(s)	529, 545
MboI	GATC	2 cut(s)	527, 543
MboII	GAAGA	4 cut(s)	330, 377, 419, 502
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	8 cut(s)	12, 39, 47, 113, 158, 189, 376, 499
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	81, 159, 178, 274, 412, 478
Mox20I	TGGCCA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	527, 543
NlaIII	CATG	3 cut(s)	62, 259, 519
NlaIV	GGNNCC	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	503
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	82, 469
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	2 cut(s)	314, 510
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	2 cut(s)	81, 468
Sau3AI	GATC	2 cut(s)	527, 543
Sau96I	GGNCC	2 cut(s)	314, 510
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	5 cut(s)	151, 213, 429, 438, 469
SfaNI	GCATC	5 cut(s)	96, 236, 337, 358, 468
SinI	GGWCC	2 cut(s)	314, 510
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	8 cut(s)	12, 39, 47, 113, 158, 189, 376, 499
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	542
TasI	AATT	8 cut(s)	12, 39, 47, 113, 158, 189, 376, 499
TatI	WGTACW	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	247, 358
TseI	GCWGC	2 cut(s)	80, 467
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	247, 358
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	314, 510
VspI	ATTAAT	1 cut(s)	161
XapI	RAATTY	5 cut(s)	12, 39, 47, 376, 499
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.