Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013291

Physical Location & Seq

Genomic Coordinates Forward (+)

6183612 .. 6187151

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGAGCTTTCAGAAACCTATGCTTGTGTTCCATCGACGGAGAGAGGTAGAGGAATTCTGATCTCTGGTAACTCGAAGTCCGATACCATCCTCTACACTAATGGTCGATCCGTCGTGACTCTCGACCTTAACAATCCTTTAAAGGTCTCTATCTATGGTGAGCACGCTTACCCAGCTACTGTGGCGCGATATTCTCCGAACGGAGAGTGGATCGCGTCTGGTGATGTGTCGGGGACTGTTAGAATCTGGGGAGCTTACAACGATCATGTGTTGAAGAATGAGTTTAAGGTTTTGGCTGGTCGGATCGATGATCTTCAGTGGTCTGCTGATGGGATGAGGATCGTTGCTTCTGGTGATGGCAAAGGCAAATCTCTTGTTCGTGCTTTCATGTGGGATTCAGGATCAAATGTGGGAGAGTTTGATGGTCATTCTAGGAGAGTTCTTAGCTGTGCTATCAAGCCAACTAGGCCGTTCCGTATTGTAACTTGTGGGGAGGATTTTCTGGTGAATTTCTATGAAGGTCCTCCTTTTAAGTTCAAGCTCTCAAGCAGAGAGCATTCCAACTTTGTCAACTGTGTGAGGTTTGCACCAGATGGAAGTAAGTTCATTACTGTGAGTTCAGATAAGAAGGGAATCATATATGATGGAAAGACTTGTGAGATACTGGGAGAACTGTCTTCTGATGATGGGCATAAAGGTAGCATCTATGCAGTCAGCTGGAGTCCTGATGGTAAACAGGTGCTCACTGTTTCCGCAGACAAGTCAGCCAAAATATGGGATATATCAGACAACGGTAGTGGATCATTGAATACAACATTGAACTGTCCTGGATCATCAGGTGGAGTAGACGATATGCTTGTTGGGTGTCTGTGGCAGAACGATCATATTGTCACTGTTTCTCTAGGTGGCACAATCAGCATATTCTCAGCAAGCGATCTGGATAAATCCCCCTTTCAGTTTTCGGGACACATGAAGAACGTCTCTTCCTTAGCTGTGCTTAAAGGAAACGCTGATTACATATTATCCGGTAGTTATGATGGACTGATATGTAAATGGATGCTAGGCCGTGGTTTTTGCGGTAAATTGCAGCGGACACAAAACTCTCAAATAAAGTGCTTTGCTGCCCATGAAGAAGAGATCGTGACCTCTGGATATGACAATAAGATATCCAGGATCTCCTATAAAGATGATCAATGCACAAATGAAGAGTCTATCGACATTGGAAATCAACCAAAGGATCTAAGCCTTGCACCACTCTCACCCGATCTCCTTCTGGTGACCTTTGAGTCAGGAGTTGTGTTTCTTCGTGATGGGAAAGTAGTGTCAACCATCAACCTTGGGTTCATTGTCACTGCTTTGGCAGTAACACCTGATGGAACCGAAGCTGTCATCGGTGGCCAAGACGGTAAACTCCATTTGTATTCTATTAATGGTGACTCCCTCACCGAGGAAGCAGTTCTCGAGAGACACAGAGGCGCCATCAGCGTCATACGTTACTCTCCAGATTTGTCTATGTTTGCATCAGCTGATTTGAACAGAGAAGCAGTTGTGTGGGACAGAGTCTCCAGAGAGATGAAACTCAAGAACATGTTGTACCATAGCGCCCGCATAAACTGCTTAGCTTGGTCTCCAAACAGCACTATGGTTGCCACAGGATCCTTGGACACGTGTGTGATTGTGTATGAAGTGGACAAACCTGCTTCGTCACGCATGACAATAAAAGGAGCTCACTTAGGTGGAGTATATGGTCTGGGTTTTGCTGATGATTCCCATGTAGTGAGTTCTGGTGAAGATGCTTGTATCCGCGTCTGGAGCTTTACTCCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

609

Amino Acids

66.04

Weight (kDa)

5.61

Isoelectric Point (pI)

25.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	28 - 199	1.6e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	37 - 172	5e-08	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	52 - 283	2.4e-14	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	54 - 228	6.3e-19	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	101 - 264	6.2e-10	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	105 - 261	6.2e-09	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	127 - 262	7.1e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	127 - 352	2.6e-09	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	127 - 264	4.7e-15	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	151 - 279	4.7e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	160 - 357	2.2e-11	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	184 - 263	8.7e-10	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	184 - 263	3.1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	184 - 374	7e-08	Echinoderm microtubule-associated protein first beta-propeller
EIF3I	PF24805	186 - 388	4e-10	EIF3I
Beta-prop_THOC3	PF25174	186 - 264	9.1e-12	THOC3 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	188 - 262	5.4e-07	IFT122 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	226 - 378	8.8e-12	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	229 - 400	1.4e-14	WDR5 beta-propeller domain
WD40	PF00400	229 - 260	1.9e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	294 - 518	1.2e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	324 - 519	3.9e-08	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	372 - 524	9.7e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	436 - 605	2e-09	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	437 - 543	1.6e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	449 - 606	1.2e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	449 - 525	4.9e-09	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	450 - 605	9.4e-20	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	450 - 545	9.9e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	450 - 605	1.2e-10	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	451 - 598	3e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	462 - 606	6.9e-11	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	463 - 606	5.4e-08	WDR36/Utp21 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	466 - 605	2.3e-08	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	487 - 604	6.6e-06	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	490 - 606	1e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	533 - 607	8.7e-09	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	533 - 605	2e-09	THOC3 beta-propeller domain
WD40	PF00400	533 - 561	3.4e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01330 AT3G18060
fragaria_vesca	FvH4_5g17110
malus_domestica	MD06G1229500.v1.1 MD14G1234400.v1.1
prunus_persica	Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1
pyrus_communis	pycom06g20050 pycom14g19520
rosa_chinensis	RchiOBHm_Chr7g0178701
rosa_laevigata	RLG00000005421
rosa_multiflora	Rmu_sc0002320.1_g000019
rosa_roxburghii	Rroxscaffold_3G00274660
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG018100 Rh7BG017600
rosa_wichuraiana	Rw7G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1285
Acc36I	ACCTGC	1 cut(s)	1705
AccB1I	GGYRCC	1 cut(s)	1475
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	3 cut(s)	187, 215, 1806
AciI	CCGC	5 cut(s)	753, 1077, 1090, 1606, 1804
AcoI	YGGCCR	1 cut(s)	1396
AcsI	RAATTY	2 cut(s)	54, 508
AcuI	CTGAAG	1 cut(s)	299
AcvI	CACGTG	1 cut(s)	1668
AcyI	GRCGYC	1 cut(s)	1476
AfaI	GTAC	1 cut(s)	1595
AfiI	CCNNNNNNNGG	2 cut(s)	774, 1447
AflIII	ACRYGT	3 cut(s)	1587, 1665, 1667
AgsI	TTSAA	5 cut(s)	274, 538, 808, 820, 1534
AjnI	CCWGG	2 cut(s)	826, 1169
AleI	CACNNNNGTG	2 cut(s)	1670, 1734
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
Alw21I	GWGCWC	3 cut(s)	165, 744, 1729
Alw26I	GTCTC	5 cut(s)	151, 985, 1459, 1567, 1632
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	1460
AoxI	GGCC	3 cut(s)	467, 1063, 1396
ApeKI	GCWGC	2 cut(s)	1087, 1121
ApoI	RAATTY	2 cut(s)	54, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
AseI	ATTAAT	1 cut(s)	1428
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	3 cut(s)	187, 1478, 1604
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	9 cut(s)	170, 233, 365, 517, 1251, 1288, 1435, 1445, 1799
AvaI	CYCGRG	1 cut(s)	1460
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	1398
BamHI	GGATCC	1 cut(s)	1655
BanI	GGYRCC	1 cut(s)	1475
BanII	GRGCYC	1 cut(s)	1729
BbrPI	CACGTG	1 cut(s)	1668
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	3 cut(s)	165, 744, 1729
BbvI	GCAGC	2 cut(s)	1099, 1108
BceAI	ACGGC	2 cut(s)	454, 1050
BciT130I	CCWGG	2 cut(s)	828, 1171
BciVI	GTATCC	1 cut(s)	1811
BclI	TGATCA	1 cut(s)	1189
BcoDI	GTCTC	5 cut(s)	151, 985, 1459, 1567, 1632
BfaI	CTAG	4 cut(s)	432, 465, 902, 1061
BfoI	RGCGCY	2 cut(s)	1479, 1605
BfuAI	ACCTGC	1 cut(s)	1705
BfuI	GTATCC	1 cut(s)	1811
BglI	GCCNNNNNGGC	1 cut(s)	466
BisI	GCNGC	2 cut(s)	1088, 1122
BlpI	GCTNAGC	1 cut(s)	1618
BlsI	GCNGC	2 cut(s)	1089, 1123
Bme1390I	CCNGG	2 cut(s)	828, 1171
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	1460
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	1378, 1477, 1657
BmrFI	CCNGG	2 cut(s)	828, 1171
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	4 cut(s)	711, 1047, 1529, 1783
BmuI	ACTGGG	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	1 cut(s)	1804
BpmI	CTGGAG	3 cut(s)	739, 1485, 1549
Bpu10I	CCTNAGC	1 cut(s)	988
Bpu1102I	GCTNAGC	1 cut(s)	1618
BpuEI	CTTGAG	2 cut(s)	529, 1565
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	1668
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	1476
BsaI	GGTCTC	2 cut(s)	151, 1632
BsaJI	CCNNGG	4 cut(s)	1066, 1336, 1446, 1659
BsaWI	WCCGGW	1 cut(s)	1025
BsaXI	ACNNNNNCTCC	4 cut(s)	1251, 1281, 1547, 1577
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 1447
Bse1I	ACTGG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	828, 1171
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	1066, 1336, 1446, 1659
BseGI	GGATG	3 cut(s)	87, 339, 1062
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	774, 1447
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	1812
BseXI	GCAGC	2 cut(s)	1099, 1108
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	3 cut(s)	187, 215, 1806
BshFI	GGCC	3 cut(s)	469, 1065, 1398
BshNI	GGYRCC	1 cut(s)	1475
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	3 cut(s)	165, 744, 1729
BsiHKCI	CYCGRG	1 cut(s)	1460
BsiSI	CCGG	1 cut(s)	1026
BslFI	GGGAC	3 cut(s)	247, 978, 1568
BslI	CCNNNNNNNGG	2 cut(s)	774, 1447
BsmAI	GTCTC	5 cut(s)	151, 985, 1459, 1567, 1632
BsmBI	CGTCTC	1 cut(s)	985
BsmFI	GGGAC	3 cut(s)	247, 978, 1568
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	469, 1065, 1398
Bso31I	GGTCTC	2 cut(s)	151, 1632
BsoBI	CYCGRG	1 cut(s)	1460
Bsp1286I	GDGCHC	3 cut(s)	165, 744, 1729
Bsp1720I	GCTNAGC	1 cut(s)	1618
BspACI	CCGC	5 cut(s)	753, 1077, 1090, 1606, 1804
BspANI	GGCC	3 cut(s)	469, 1065, 1398
BspCNI	CTCAG	1 cut(s)	938
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	3 cut(s)	187, 215, 1806
BspLI	GGNNCC	3 cut(s)	1378, 1477, 1657
BspMI	ACCTGC	1 cut(s)	1705
BspT107I	GGYRCC	1 cut(s)	1475
BspTNI	GGTCTC	2 cut(s)	151, 1632
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	4 cut(s)	1066, 1336, 1446, 1659
BssNI	GRCGYC	1 cut(s)	1476
BssT1I	CCWWGG	2 cut(s)	1336, 1659
Bst2UI	CCWGG	2 cut(s)	828, 1171
Bst6I	CTCTTC	3 cut(s)	988, 1128, 1200
BstACI	GRCGYC	1 cut(s)	1476
BstAPI	GCANNNNNTGC	1 cut(s)	1614
BstBAI	YACGTR	1 cut(s)	1668
BstC8I	GCNNGC	3 cut(s)	165, 931, 1606
BstDEI	CTNAG	6 cut(s)	443, 925, 988, 1241, 1618, 1732
BstDSI	CCRYGG	1 cut(s)	1066
BstEII	GGTNACC	1 cut(s)	1276
BstENI	CCTNNNNNAGG	1 cut(s)	1445
BstF5I	GGATG	3 cut(s)	87, 339, 1062
BstFNI	CGCG	3 cut(s)	187, 215, 1806
BstH2I	RGCGCY	2 cut(s)	1479, 1605
BstHHI	GCGC	3 cut(s)	187, 1478, 1604
BstMAI	GTCTC	5 cut(s)	151, 985, 1459, 1567, 1632
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 182, 466, 915, 1482, 1614, 1812
BstNI	CCWGG	2 cut(s)	828, 1171
BstNSI	RCATGY	1 cut(s)	1591
BstPI	GGTNACC	1 cut(s)	1276
BstSCI	CCNGG	2 cut(s)	826, 1169
BstUI	CGCG	3 cut(s)	187, 215, 1806
BstV1I	GCAGC	2 cut(s)	1099, 1108
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	3 cut(s)	1173, 1237, 1655
BstYI	RGATCY	3 cut(s)	1173, 1237, 1655
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	1811
BsuRI	GGCC	3 cut(s)	469, 1065, 1398
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	1066
BtsCI	GGATG	3 cut(s)	87, 339, 1062
BtsI	GCAGTG	1 cut(s)	1350
BtsIMutI	CAGTG	4 cut(s)	323, 744, 891, 1350
BveI	ACCTGC	1 cut(s)	1705
Cac8I	GCNNGC	3 cut(s)	165, 931, 1606
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	3 cut(s)	187, 1478, 1604
Cfr13I	GGNCC	1 cut(s)	521
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	3 cut(s)	204, 1474, 1795
Csp6I	GTAC	1 cut(s)	1594
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	7 cut(s)	266, 388, 970, 1127, 1588, 1711, 1772
CviQI	GTAC	1 cut(s)	1594
DdeI	CTNAG	6 cut(s)	443, 925, 988, 1241, 1618, 1732
DinI	GGCGCC	1 cut(s)	1477
DraI	TTTAAA	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	1285
DseDI	GACNNNNNNGTC	1 cut(s)	1285
EaeI	YGGCCR	1 cut(s)	1396
Eam1104I	CTCTTC	3 cut(s)	988, 1128, 1200
EarI	CTCTTC	3 cut(s)	988, 1128, 1200
Ecl136II	GAGCTC	1 cut(s)	1727
Eco130I	CCWWGG	2 cut(s)	1336, 1659
Eco24I	GRGCYC	1 cut(s)	1729
Eco31I	GGTCTC	2 cut(s)	151, 1632
Eco32I	GATATC	1 cut(s)	1167
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	1727
Eco57I	CTGAAG	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	1668
Eco88I	CYCGRG	1 cut(s)	1460
Eco91I	GGTNACC	1 cut(s)	1276
EcoICRI	GAGCTC	1 cut(s)	1727
EcoNI	CCTNNNNNAGG	1 cut(s)	1445
EcoO109I	RGGNCCY	1 cut(s)	521
EcoO65I	GGTNACC	1 cut(s)	1276
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	826, 1169
EcoRV	GATATC	1 cut(s)	1167
EcoT14I	CCWWGG	2 cut(s)	1336, 1659
EcoT38I	GRGCYC	1 cut(s)	1729
EgeI	GGCGCC	1 cut(s)	1477
EheI	GGCGCC	1 cut(s)	1477
ErhI	CCWWGG	2 cut(s)	1336, 1659
Esp3I	CGTCTC	1 cut(s)	985
FaeI	CATG	7 cut(s)	269, 391, 973, 1130, 1591, 1714, 1775
FaqI	GGGAC	3 cut(s)	247, 978, 1568
FatI	CATG	7 cut(s)	265, 387, 969, 1126, 1587, 1710, 1771
FauI	CCCGC	1 cut(s)	1613
FbaI	TGATCA	1 cut(s)	1189
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	1088, 1122
FokI	GGATG	3 cut(s)	74, 346, 1069
FriOI	GRGCYC	1 cut(s)	1729
Fsp4HI	GCNGC	2 cut(s)	1088, 1122
FspBI	CTAG	4 cut(s)	432, 465, 902, 1061
GlaI	GCGC	3 cut(s)	186, 1477, 1603
GluI	GCNGC	2 cut(s)	1088, 1122
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	3 cut(s)	739, 1485, 1549
HaeII	RGCGCY	2 cut(s)	1479, 1605
HaeIII	GGCC	3 cut(s)	469, 1065, 1398
HapII	CCGG	1 cut(s)	1026
HgaI	GACGC	3 cut(s)	204, 1474, 1795
HhaI	GCGC	3 cut(s)	187, 1478, 1604
Hin1I	GRCGYC	1 cut(s)	1476
Hin1II	CATG	7 cut(s)	269, 391, 973, 1130, 1591, 1714, 1775
Hin6I	GCGC	3 cut(s)	185, 1476, 1602
HinP1I	GCGC	3 cut(s)	185, 1476, 1602
HincII	GTYRAC	2 cut(s)	571, 1326
HindII	GTYRAC	2 cut(s)	571, 1326
HpaII	CCGG	1 cut(s)	1026
HphI	GGTGA	9 cut(s)	170, 233, 365, 517, 1251, 1288, 1435, 1445, 1799
Hpy166II	GTNNAC	6 cut(s)	571, 734, 847, 1326, 1409, 1690
Hpy188I	TCNGA	8 cut(s)	13, 60, 82, 198, 303, 622, 682, 787
Hpy8I	GTNNAC	6 cut(s)	571, 734, 847, 1326, 1409, 1690
Hpy99I	CGWCG	2 cut(s)	40, 116
HpyAV	CCTTC	3 cut(s)	512, 622, 1280
HpyCH4IV	ACGT	3 cut(s)	978, 1492, 1667
HpyCH4V	TGCA	6 cut(s)	587, 710, 1087, 1197, 1250, 1520
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 182, 466, 915, 1482, 1614, 1812
HpyF3I	CTNAG	6 cut(s)	443, 925, 988, 1241, 1618, 1732
HpySE526I	ACGT	3 cut(s)	978, 1492, 1667
Hsp92I	GRCGYC	1 cut(s)	1476
Hsp92II	CATG	7 cut(s)	269, 391, 973, 1130, 1591, 1714, 1775
HspAI	GCGC	3 cut(s)	185, 1476, 1602
KasI	GGCGCC	1 cut(s)	1475
Ksp22I	TGATCA	1 cut(s)	1189
LmnI	GCTCC	4 cut(s)	4, 251, 1724, 1812
Lsp1109I	GCAGC	2 cut(s)	1099, 1108
LweI	GCATC	4 cut(s)	711, 1047, 1529, 1783
MaeI	CTAG	4 cut(s)	432, 465, 902, 1061
MaeII	ACGT	3 cut(s)	978, 1492, 1667
MflI	RGATCY	3 cut(s)	1173, 1237, 1655
MhlI	GDGCHC	3 cut(s)	165, 744, 1729
MlsI	TGGCCA	1 cut(s)	1398
MluCI	AATT	3 cut(s)	54, 508, 1082
MluNI	TGGCCA	1 cut(s)	1398
Mly113I	GGCGCC	1 cut(s)	1476
MlyI	GAGTC	6 cut(s)	112, 730, 1217, 1295, 1430, 1569
MmeI	TCCRAC	2 cut(s)	281, 585
Mox20I	TGGCCA	1 cut(s)	1398
MroXI	GAANNNNTTC	1 cut(s)	1455
MscI	TGGCCA	1 cut(s)	1398
MseI	TTAA	6 cut(s)	129, 140, 285, 531, 999, 1428
MslI	CAYNNNNRTG	3 cut(s)	611, 1670, 1734
Msp20I	TGGCCA	1 cut(s)	1398
MspA1I	CMGCKG	3 cut(s)	717, 1090, 1526
MspI	CCGG	1 cut(s)	1026
MspR9I	CCNGG	2 cut(s)	828, 1171
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	828, 1171
MvnI	CGCG	3 cut(s)	187, 215, 1806
MwoI	GCNNNNNNNGC	7 cut(s)	173, 182, 466, 915, 1482, 1614, 1812
NarI	GGCGCC	1 cut(s)	1476
NlaIII	CATG	7 cut(s)	269, 391, 973, 1130, 1591, 1714, 1775
NlaIV	GGNNCC	3 cut(s)	1378, 1477, 1657
NmuCI	GTSAC	7 cut(s)	115, 889, 1141, 1276, 1348, 1433, 1704
NspI	RCATGY	1 cut(s)	1591
OliI	CACNNNNGTG	2 cut(s)	1670, 1734
PaeR7I	CTCGAG	1 cut(s)	1460
PciI	ACATGT	1 cut(s)	1587
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	4 cut(s)	243, 395, 633, 1766
PflFI	GACNNNGTC	1 cut(s)	1559
PflMI	CCANNNNNTGG	1 cut(s)	774
PfoI	TCCNGGA	2 cut(s)	826, 1169
PkrI	GCNGC	2 cut(s)	1089, 1123
PleI	GAGTC	6 cut(s)	112, 729, 1216, 1294, 1430, 1568
PluTI	GGCGCC	1 cut(s)	1479
PmaCI	CACGTG	1 cut(s)	1668
PmlI	CACGTG	1 cut(s)	1668
PpsI	GAGTC	6 cut(s)	112, 729, 1216, 1294, 1430, 1568
Ppu21I	YACGTR	1 cut(s)	1668
PpuMI	RGGWCCY	1 cut(s)	521
PscI	ACATGT	1 cut(s)	1587
PshBI	ATTAAT	1 cut(s)	1428
Psp124BI	GAGCTC	1 cut(s)	1729
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	826, 1169
PspCI	CACGTG	1 cut(s)	1668
PspEI	GGTNACC	1 cut(s)	1276
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	826, 1169
PspN4I	GGNNCC	3 cut(s)	1378, 1477, 1657
PspPI	GGNCC	1 cut(s)	521
PspPPI	RGGWCCY	1 cut(s)	521
PsrI	GAACNNNNNNTAC	2 cut(s)	1577, 1609
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	3 cut(s)	1173, 1237, 1655
PsyI	GACNNNGTC	1 cut(s)	1559
PvuII	CAGCTG	2 cut(s)	717, 1526
RsaI	GTAC	1 cut(s)	1595
RsaNI	GTAC	1 cut(s)	1594
RseI	CAYNNNNRTG	3 cut(s)	611, 1670, 1734
SacI	GAGCTC	1 cut(s)	1729
SaqAI	TTAA	6 cut(s)	129, 140, 285, 531, 999, 1428
SatI	GCNGC	2 cut(s)	1088, 1122
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	6 cut(s)	112, 730, 1217, 1295, 1430, 1569
ScrFI	CCNGG	2 cut(s)	828, 1171
SduI	GDGCHC	3 cut(s)	165, 744, 1729
SfaNI	GCATC	4 cut(s)	711, 1047, 1529, 1783
SfoI	GGCGCC	1 cut(s)	1477
Sfr274I	CTCGAG	1 cut(s)	1460
SinI	GGWCC	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	1460
SmiMI	CAYNNNNRTG	3 cut(s)	611, 1670, 1734
SmlI	CTYRAG	3 cut(s)	544, 1460, 1580
SmoI	CTYRAG	3 cut(s)	544, 1460, 1580
Sse9I	AATT	3 cut(s)	54, 508, 1082
SsiI	CCGC	5 cut(s)	753, 1077, 1090, 1606, 1804
SspDI	GGCGCC	1 cut(s)	1475
SspMI	CTAG	4 cut(s)	432, 465, 902, 1061
SstI	GAGCTC	1 cut(s)	1729
StyD4I	CCNGG	2 cut(s)	826, 1169
StyI	CCWWGG	2 cut(s)	1336, 1659
TaiI	ACGT	3 cut(s)	981, 1495, 1670
TaqI	TCGA	7 cut(s)	35, 74, 106, 123, 306, 1215, 1461
TasI	AATT	3 cut(s)	54, 508, 1082
TfiI	GAWTC	4 cut(s)	243, 395, 633, 1766
Tru1I	TTAA	6 cut(s)	129, 140, 285, 531, 999, 1428
Tru9I	TTAA	6 cut(s)	129, 140, 285, 531, 999, 1428
TscAI	CASTG	4 cut(s)	323, 751, 898, 1357
TseFI	GTSAC	7 cut(s)	115, 889, 1141, 1276, 1348, 1433, 1704
TseI	GCWGC	2 cut(s)	1087, 1121
Tsp45I	GTSAC	7 cut(s)	115, 889, 1141, 1276, 1348, 1433, 1704
TspDTI	ATGAA	9 cut(s)	376, 531, 595, 986, 1143, 1218, 1333, 1589, 1698
TspGWI	ACGGA	4 cut(s)	53, 100, 216, 464
TspRI	CASTG	4 cut(s)	323, 751, 898, 1357
Tth111I	GACNNNGTC	1 cut(s)	1559
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	521
VspI	ATTAAT	1 cut(s)	1428
XagI	CCTNNNNNAGG	1 cut(s)	1445
XapI	RAATTY	2 cut(s)	54, 508
XceI	RCATGY	1 cut(s)	1591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1657
XhoI	CTCGAG	1 cut(s)	1460
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	4 cut(s)	432, 465, 902, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.