Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Reverse (-)

55760509 .. 55765203

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAAACTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTATCATCATCATCATCATCAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAACTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTAATTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTCCCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGACACTAAGCGTCCCATACATGAAGTCATCACGCAACAACAAGCCCTCTAAAGCAATGTTGCAAAGGGGTGTGATAGAGATAAATGGCTCAAATGGAGATCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTCACAGCTGGTACTGACGCTGCTAATGCCACTGCTGGTGTTTCTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

478

Amino Acids

52.1

Weight (kDa)

8.15

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	2 cut(s)	223, 1321
AccII	CGCG	1 cut(s)	1012
AciI	CCGC	1 cut(s)	1012
AcoI	YGGCCR	1 cut(s)	1403
AcsI	RAATTY	5 cut(s)	187, 344, 525, 598, 648
AcuI	CTGAAG	2 cut(s)	625, 1070
AfaI	GTAC	3 cut(s)	225, 1131, 1357
AfiI	CCNNNNNNNGG	2 cut(s)	233, 1418
AflII	CTTAAG	1 cut(s)	1043
AgsI	TTSAA	5 cut(s)	192, 199, 274, 333, 851
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	3 cut(s)	616, 958, 1170
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
Alw21I	GWGCWC	2 cut(s)	312, 778
Alw26I	GTCTC	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	248, 430, 1403
ApeKI	GCWGC	3 cut(s)	992, 995, 1364
ApoI	RAATTY	5 cut(s)	187, 344, 525, 598, 648
AseI	ATTAAT	2 cut(s)	216, 516
Asp718I	GGTACC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	129, 905
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	129, 905
BalI	TGGCCA	1 cut(s)	1405
BanI	GGYRCC	2 cut(s)	223, 1321
BanII	GRGCYC	1 cut(s)	312
BbsI	GAAGAC	2 cut(s)	57, 839
Bbv12I	GWGCWC	2 cut(s)	312, 778
BbvI	GCAGC	3 cut(s)	982, 1004, 1351
BccI	CCATC	4 cut(s)	27, 103, 190, 1129
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	3 cut(s)	618, 960, 1172
BciVI	GTATCC	1 cut(s)	1142
BclI	TGATCA	1 cut(s)	883
BcoDI	GTCTC	1 cut(s)	1172
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	255, 378
BfrI	CTTAAG	1 cut(s)	1043
BfuI	GTATCC	1 cut(s)	1142
BglII	AGATCT	1 cut(s)	1294
BisI	GCNGC	3 cut(s)	993, 996, 1365
BlsI	GCNGC	3 cut(s)	994, 997, 1366
Bme1390I	CCNGG	3 cut(s)	618, 960, 1172
Bme18I	GGWCC	2 cut(s)	129, 905
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	129, 905
BmiI	GGNNCC	5 cut(s)	131, 225, 721, 907, 1323
BmrFI	CCNGG	3 cut(s)	618, 960, 1172
BmsI	GCATC	4 cut(s)	37, 603, 846, 1133
BpiI	GAAGAC	2 cut(s)	57, 839
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	476, 694
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	427, 617, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 1418
Bse1I	ACTGG	1 cut(s)	1406
Bse3DI	GCAATG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	618, 960, 1172
BseDI	CCNNGG	3 cut(s)	427, 617, 805
BseGI	GGATG	1 cut(s)	1124
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	233, 1418
BseMI	GCAATG	1 cut(s)	1239
BseMII	CTCAG	3 cut(s)	487, 738, 1289
BseNI	ACTGG	1 cut(s)	1406
BseRI	GAGGAG	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	982, 1004, 1351
BseYI	CCCAGC	2 cut(s)	132, 656
BsgI	GTGCAG	1 cut(s)	981
Bsh1236I	CGCG	1 cut(s)	1012
BshFI	GGCC	3 cut(s)	250, 432, 1405
BshNI	GGYRCC	2 cut(s)	223, 1321
BsiHKAI	GWGCWC	2 cut(s)	312, 778
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	891, 1175
BslI	CCNNNNNNNGG	2 cut(s)	233, 1418
BsmAI	GTCTC	1 cut(s)	1172
BsmFI	GGGAC	2 cut(s)	891, 1175
BsnI	GGCC	3 cut(s)	250, 432, 1405
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	312, 778
Bsp143I	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
BspACI	CCGC	1 cut(s)	1012
BspANI	GGCC	3 cut(s)	250, 432, 1405
BspCNI	CTCAG	3 cut(s)	486, 737, 1290
BspFNI	CGCG	1 cut(s)	1012
BspHI	TCATGA	3 cut(s)	778, 880, 1279
BspLI	GGNNCC	5 cut(s)	131, 225, 721, 907, 1323
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	2 cut(s)	223, 1321
BspTI	CTTAAG	1 cut(s)	1043
BsrDI	GCAATG	1 cut(s)	1239
BsrI	ACTGG	1 cut(s)	1406
BssECI	CCNNGG	3 cut(s)	427, 617, 805
BssMI	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
BssT1I	CCWWGG	1 cut(s)	805
Bst2UI	CCWGG	3 cut(s)	618, 960, 1172
Bst4CI	ACNGT	2 cut(s)	203, 687
Bst6I	CTCTTC	4 cut(s)	82, 300, 511, 1089
BstAFI	CTTAAG	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	1032
BstC8I	GCNNGC	3 cut(s)	123, 248, 741
BstDEI	CTNAG	5 cut(s)	473, 724, 754, 1184, 1298
BstF5I	GGATG	1 cut(s)	1124
BstFNI	CGCG	1 cut(s)	1012
BstKTI	GATC	6 cut(s)	472, 626, 751, 886, 1279, 1297
BstMAI	GTCTC	1 cut(s)	1172
BstMBI	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 989, 1032, 1370
BstNI	CCWGG	3 cut(s)	618, 960, 1172
BstNSI	RCATGY	2 cut(s)	125, 1339
BstSCI	CCNGG	3 cut(s)	616, 958, 1170
BstUI	CGCG	1 cut(s)	1012
BstV1I	GCAGC	3 cut(s)	982, 1004, 1351
BstV2I	GAAGAC	2 cut(s)	57, 839
BstX2I	RGATCY	1 cut(s)	1294
BstYI	RGATCY	1 cut(s)	1294
BsuI	GTATCC	1 cut(s)	1142
BsuRI	GGCC	3 cut(s)	250, 432, 1405
BtsCI	GGATG	1 cut(s)	1124
BtsI	GCAGTG	2 cut(s)	241, 1374
BtsIMutI	CAGTG	3 cut(s)	241, 481, 1374
Cac8I	GCNNGC	3 cut(s)	123, 248, 741
CciI	TCATGA	3 cut(s)	778, 880, 1279
Cfr13I	GGNCC	2 cut(s)	129, 905
CseI	GACGC	2 cut(s)	1177, 1370
CsiI	ACCWGGT	1 cut(s)	1170
Csp6I	GTAC	3 cut(s)	224, 1130, 1356
CviQI	GTAC	3 cut(s)	224, 1130, 1356
DdeI	CTNAG	5 cut(s)	473, 724, 754, 1184, 1298
DpnI	GATC	6 cut(s)	471, 625, 750, 885, 1278, 1296
DpnII	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
EaeI	YGGCCR	1 cut(s)	1403
Eam1104I	CTCTTC	4 cut(s)	82, 300, 511, 1089
EarI	CTCTTC	4 cut(s)	82, 300, 511, 1089
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	129, 905
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	625, 1070
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	616, 958, 1170
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	805
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	2 cut(s)	891, 1175
FbaI	TGATCA	1 cut(s)	883
Fnu4HI	GCNGC	3 cut(s)	993, 996, 1365
FokI	GGATG	1 cut(s)	1111
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	3 cut(s)	993, 996, 1365
FspBI	CTAG	2 cut(s)	255, 378
GluI	GCNGC	3 cut(s)	993, 996, 1365
GsaI	CCCAGC	2 cut(s)	136, 660
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	250, 432, 1405
HgaI	GACGC	2 cut(s)	1177, 1370
HincII	GTYRAC	1 cut(s)	1399
HindII	GTYRAC	1 cut(s)	1399
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	5 cut(s)	5, 46, 114, 329, 1019
HpaI	GTTAAC	1 cut(s)	1399
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	1399
Hpy188I	TCNGA	4 cut(s)	328, 727, 1148, 1299
Hpy8I	GTNNAC	1 cut(s)	1399
Hpy99I	CGWCG	2 cut(s)	694, 700
HpyAV	CCTTC	2 cut(s)	795, 1048
HpyCH4III	ACNGT	2 cut(s)	203, 687
HpyCH4V	TGCA	9 cut(s)	11, 739, 859, 998, 1079, 1100, 1165, 1240, 1335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 989, 1032, 1370
HpyF3I	CTNAG	5 cut(s)	473, 724, 754, 1184, 1298
KpnI	GGTACC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	883
KspAI	GTTAAC	1 cut(s)	1399
Kzo9I	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	2 cut(s)	42, 725
Lsp1109I	GCAGC	3 cut(s)	982, 1004, 1351
LweI	GCATC	4 cut(s)	37, 603, 846, 1133
MabI	ACCWGGT	1 cut(s)	1170
MaeI	CTAG	2 cut(s)	255, 378
MaeIII	GTNAC	2 cut(s)	1020, 1345
MalI	GATC	6 cut(s)	471, 625, 750, 885, 1278, 1296
MboI	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
MfeI	CAATTG	2 cut(s)	608, 1091
MflI	RGATCY	1 cut(s)	1294
MhlI	GDGCHC	2 cut(s)	312, 778
MlsI	TGGCCA	1 cut(s)	1405
MluNI	TGGCCA	1 cut(s)	1405
MlyI	GAGTC	2 cut(s)	14, 1028
MmeI	TCCRAC	3 cut(s)	91, 696, 996
Mox20I	TGGCCA	1 cut(s)	1405
MscI	TGGCCA	1 cut(s)	1405
MseI	TTAA	7 cut(s)	216, 300, 384, 516, 677, 1044, 1398
MslI	CAYNNNNRTG	1 cut(s)	1330
Msp20I	TGGCCA	1 cut(s)	1405
MspA1I	CMGCKG	2 cut(s)	995, 1352
MspCI	CTTAAG	1 cut(s)	1043
MspR9I	CCNGG	3 cut(s)	618, 960, 1172
MunI	CAATTG	2 cut(s)	608, 1091
MvaI	CCWGG	3 cut(s)	618, 960, 1172
MvnI	CGCG	1 cut(s)	1012
MwoI	GCNNNNNNNGC	4 cut(s)	34, 989, 1032, 1370
NdeII	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
NlaIV	GGNNCC	5 cut(s)	131, 225, 721, 907, 1323
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	1020, 1345
NspI	RCATGY	2 cut(s)	125, 1339
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	3 cut(s)	778, 880, 1279
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	2 cut(s)	695, 1337
PfeI	GAWTC	3 cut(s)	46, 114, 329
PflFI	GACNNNGTC	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	994, 997, 1366
PleI	GAGTC	2 cut(s)	13, 1027
PpsI	GAGTC	2 cut(s)	13, 1027
PshBI	ATTAAT	2 cut(s)	216, 516
PsiI	TTATAA	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	3 cut(s)	616, 958, 1170
PspFI	CCCAGC	2 cut(s)	132, 656
PspGI	CCWGG	3 cut(s)	616, 958, 1170
PspN4I	GGNNCC	5 cut(s)	131, 225, 721, 907, 1323
PspPI	GGNCC	2 cut(s)	129, 905
PsuI	RGATCY	1 cut(s)	1294
PsyI	GACNNNGTC	1 cut(s)	499
PvuII	CAGCTG	2 cut(s)	995, 1352
RsaI	GTAC	3 cut(s)	225, 1131, 1357
RsaNI	GTAC	3 cut(s)	224, 1130, 1356
RseI	CAYNNNNRTG	1 cut(s)	1330
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	7 cut(s)	216, 300, 384, 516, 677, 1044, 1398
SatI	GCNGC	3 cut(s)	993, 996, 1365
Sau3AI	GATC	6 cut(s)	469, 623, 748, 883, 1276, 1294
Sau96I	GGNCC	2 cut(s)	129, 905
SchI	GAGTC	2 cut(s)	14, 1028
ScrFI	CCNGG	3 cut(s)	618, 960, 1172
SduI	GDGCHC	2 cut(s)	312, 778
SexAI	ACCWGGT	1 cut(s)	1170
SfaNI	GCATC	4 cut(s)	37, 603, 846, 1133
SinI	GGWCC	2 cut(s)	129, 905
SmiMI	CAYNNNNRTG	1 cut(s)	1330
SmlI	CTYRAG	3 cut(s)	491, 709, 1043
SmoI	CTYRAG	3 cut(s)	491, 709, 1043
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	1 cut(s)	125
SsiI	CCGC	1 cut(s)	1012
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	255, 378
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	616, 958, 1170
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	2 cut(s)	203, 687
TaqI	TCGA	2 cut(s)	764, 1176
TaqII	GACCGA	1 cut(s)	1130
TfiI	GAWTC	3 cut(s)	46, 114, 329
Tru1I	TTAA	7 cut(s)	216, 300, 384, 516, 677, 1044, 1398
Tru9I	TTAA	7 cut(s)	216, 300, 384, 516, 677, 1044, 1398
TscAI	CASTG	3 cut(s)	248, 481, 1381
TseFI	GTSAC	2 cut(s)	1020, 1345
TseI	GCWGC	3 cut(s)	992, 995, 1364
Tsp45I	GTSAC	2 cut(s)	1020, 1345
TspDTI	ATGAA	6 cut(s)	312, 479, 519, 746, 951, 1214
TspGWI	ACGGA	1 cut(s)	1117
TspRI	CASTG	3 cut(s)	248, 481, 1381
Tth111I	GACNNNGTC	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	2 cut(s)	129, 905
VspI	ATTAAT	2 cut(s)	216, 516
XapI	RAATTY	5 cut(s)	187, 344, 525, 598, 648
XceI	RCATGY	2 cut(s)	125, 1339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	255, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.