FvH4_4g32290
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001619
Physical Location & Seq
Forward (+)
31004986 .. 31007005
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32290.t1

Sequence Viewer

Length: 768 bp
ATGAGGAAACCCTGCTGCGACAAGCAAGACACGAACAAAGGAGCTTGGTCGAAGCAAGAAGATCAGAAGCTCATCGATTACATTCGCAAACATGGCGAGGGTTGTTGGCGTACCCTTCCTCAAGCCGCAGGCCTTCTTCGATGCGGTAAAAGTTGCAGACTTCGGTGGATAAACTATCTACGGCCGGACCTTAAAAGGGGCAAGTTTGCTGAAGATGAAGAAGATCTCATCATTAAGCTTCATGCACTCCTAGGCAATCGGTGGTCGCTGATTGCCGGAAGATTGCCGGGACGTACAGACAATGAAGTGAAGAACTATTGGAACTCTCATTTGAGACGAAAGCTTATAACCATGGGTATAGATCCAAACAATCATCGACCCACCAGCACTCTCTTCCCTCGGCCTCATAATCATCATCATCAAAACCCACCACAGACACTAAAATCTCCAGCTGGTTCTGCTATCAATAATTTTAACCATGAGCCAGTAGTGTTCGAGTCCAAAACTCCGCGTGGTGATGATCAAAATTGCGAGCAGGTCTCGGATGGCAGAAGTTGCTTAGAGGATGATTCTTCTTGTGGTGGTCATCACCTGCCTGATTTAAACCTTGATCTCACTGTCCATCTCAGGGTTTCTAATGATGATCACCAATATCTCAGTAAGGAGCTCAATCATCTTCATCTCAGAATTAGTGACCCTCATGAAATGTCGGTTGGGACAAAGACTGATATATTTGCCTCATCTACCACGCTTCCTCTCTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

256

Amino Acids

29.22

Weight (kDa)

8.6

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 1.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 5.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AarI CACCTGC 1 cut(s) 600
Acc36I ACCTGC 2 cut(s) 526, 600
AccII CGCG 1 cut(s) 511
AciI CCGC 3 cut(s) 126, 144, 509
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 182
AcuI CTGAAG 2 cut(s) 231, 745
AfaI GTAC 2 cut(s) 112, 295
AfiI CCNNNNNNNGG 2 cut(s) 196, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 6 cut(s) 44, 70, 238, 343, 452, 667
AluI AGCT 6 cut(s) 44, 70, 238, 343, 452, 667
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 328, 544
AlwI GGATC 1 cut(s) 356
AoxI GGCC 3 cut(s) 130, 182, 401
ApeKI GCWGC 1 cut(s) 15
AspA2I CCTAGG 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 527, 581, 638
AvaII GGWCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 250
BanII GRGCYC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 2
BccI CCATC 2 cut(s) 539, 630
BceAI ACGGC 1 cut(s) 197
BclI TGATCA 2 cut(s) 520, 643
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 328, 544
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 2 cut(s) 526, 600
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 16, 126
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 2 cut(s) 17, 127
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 250, 351, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 628
Bse1I ACTGG 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 250, 351, 398
BseGI GGATG 2 cut(s) 550, 571
BseLI CCNNNNNNNGG 2 cut(s) 196, 628
BseMII CTCAG 3 cut(s) 640, 670, 697
BseNI ACTGG 1 cut(s) 485
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 2
Bsh1236I CGCG 1 cut(s) 511
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 3 cut(s) 132, 184, 403
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 3 cut(s) 185, 276, 287
BslFI GGGAC 2 cut(s) 303, 730
BslI CCNNNNNNNGG 2 cut(s) 196, 628
BsmAI GTCTC 2 cut(s) 328, 544
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 303, 730
BsnI GGCC 3 cut(s) 132, 184, 403
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 6 cut(s) 61, 223, 361, 520, 610, 643
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 3 cut(s) 126, 144, 509
BspANI GGCC 3 cut(s) 132, 184, 403
BspCNI CTCAG 3 cut(s) 639, 669, 696
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 700
BspMI ACCTGC 2 cut(s) 526, 600
BspPI GGATC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 544
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 250, 351, 398
BssMI GATC 6 cut(s) 61, 223, 361, 520, 610, 643
BssT1I CCWWGG 2 cut(s) 250, 351
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 2 cut(s) 398, 764
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 130, 533
BstDEI CTNAG 4 cut(s) 559, 626, 656, 683
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 550, 571
BstFNI CGCG 1 cut(s) 511
BstKTI GATC 6 cut(s) 64, 226, 364, 523, 613, 646
BstMAI GTCTC 2 cut(s) 328, 544
BstMBI GATC 6 cut(s) 61, 223, 361, 520, 610, 643
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 93, 458, 555
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 511
BstV1I GCAGC 1 cut(s) 2
BstX2I RGATCY 2 cut(s) 223, 361
BstYI RGATCY 2 cut(s) 223, 361
BstZI CGGCCG 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 3 cut(s) 132, 184, 403
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 550, 571
BtsIMutI CAGTG 1 cut(s) 615
BveI ACCTGC 2 cut(s) 526, 600
Cac8I GCNNGC 2 cut(s) 130, 533
CciI TCATGA 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 2 cut(s) 111, 294
CviAII CATG 5 cut(s) 92, 242, 352, 479, 701
CviQI GTAC 2 cut(s) 111, 294
DdeI CTNAG 4 cut(s) 559, 626, 656, 683
DpnI GATC 6 cut(s) 63, 225, 363, 522, 612, 645
DpnII GATC 6 cut(s) 61, 223, 361, 520, 610, 643
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 398, 764
EarI CTCTTC 2 cut(s) 398, 764
Ecl136II GAGCTC 1 cut(s) 667
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 250, 351
Eco147I AGGCCT 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 231, 745
EcoICRI GAGCTC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 250, 351
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 250, 351
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 5 cut(s) 95, 245, 355, 482, 704
FaiI YATR 9 cut(s) 93, 243, 347, 353, 359, 408, 480, 702, 731
FaqI GGGAC 2 cut(s) 303, 730
FatI CATG 5 cut(s) 91, 241, 351, 478, 700
FbaI TGATCA 2 cut(s) 520, 643
Fnu4HI GCNGC 2 cut(s) 16, 126
FokI GGATG 2 cut(s) 557, 578
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 16, 126
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 16, 126
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 3 cut(s) 132, 184, 403
HapII CCGG 3 cut(s) 185, 276, 287
Hin1II CATG 5 cut(s) 95, 245, 355, 482, 704
HindIII AAGCTT 2 cut(s) 236, 341
HinfI GANTC 2 cut(s) 497, 569
HpaII CCGG 3 cut(s) 185, 276, 287
HphI GGTGA 3 cut(s) 527, 581, 638
Hpy188I TCNGA 4 cut(s) 66, 544, 686, 764
Hpy188III TCNNGA 1 cut(s) 701
HpyAV CCTTC 2 cut(s) 125, 143
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 156, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 458, 555
HpyF3I CTNAG 4 cut(s) 559, 626, 656, 683
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 5 cut(s) 95, 245, 355, 482, 704
Ksp22I TGATCA 2 cut(s) 520, 643
Kzo9I GATC 6 cut(s) 61, 223, 361, 520, 610, 643
LmnI GCTCC 2 cut(s) 41, 664
Lsp1109I GCAGC 1 cut(s) 2
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 692
MalI GATC 6 cut(s) 63, 225, 363, 522, 612, 645
MboI GATC 6 cut(s) 61, 223, 361, 520, 610, 643
MflI RGATCY 2 cut(s) 223, 361
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 3 cut(s) 469, 526, 687
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 8 cut(s) 91, 129, 408, 414, 556, 708, 748, 765
MseI TTAA 4 cut(s) 192, 234, 474, 602
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 3 cut(s) 185, 276, 287
MspR9I CCNGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 511
MwoI GCNNNNNNNGC 3 cut(s) 93, 458, 555
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 351
NdeII GATC 6 cut(s) 61, 223, 361, 520, 610, 643
NlaIII CATG 5 cut(s) 95, 245, 355, 482, 704
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 692
PagI TCATGA 1 cut(s) 700
PaqCI CACCTGC 1 cut(s) 600
PceI AGGCCT 1 cut(s) 132
PfeI GAWTC 1 cut(s) 569
PkrI GCNGC 2 cut(s) 17, 127
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PsiI TTATAA 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 669
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 2 cut(s) 223, 361
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 112, 295
RsaNI GTAC 2 cut(s) 111, 294
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 4 cut(s) 192, 234, 474, 602
SatI GCNGC 2 cut(s) 16, 126
Sau3AI GATC 6 cut(s) 61, 223, 361, 520, 610, 643
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 1 cut(s) 131
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 469, 526, 687
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 3 cut(s) 126, 144, 509
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 669
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 250, 351
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 1 cut(s) 295
TaqI TCGA 5 cut(s) 50, 75, 139, 376, 495
TasI AATT 3 cut(s) 469, 526, 687
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 4 cut(s) 192, 234, 474, 602
Tru9I TTAA 4 cut(s) 192, 234, 474, 602
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 230, 231, 318, 668, 717
TspRI CASTG 1 cut(s) 622
VpaK11BI GGWCC 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.