RchiOBHm_Chr7g0178691
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001619
Physical Location & Seq
Reverse (-)
1287518 .. 1289600
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15925

Sequence Viewer

Length: 549 bp
ATGAGGAAGCCTTGCTGTGAGAAGACTGAGATGACTAAAGGAGCGTGGTCGATACAAGAAGACCAGAAACTCATTGACTACATCCAAAAACATGGCGAAGGTTGCTGGAATTCTCTTCCTAAGGCTGCAGGGTTGCGTCGTTGCGGTAAGAGTTGTCGACTGAGATGGATAAACTATCTACGACCAGATCTTAAACGAGGAAGCTTTGGAGAAGATGAAGAGGATCTCATCATCAGGCTTCATACACTCCTTGGGAATAGGTGGTCGCTAATAGCTGGAAGACTGCCTGGAAGGACAGATAACGAGGTGAAGAATTACTGGAACTCTCATTTAAAGAAAAAGCTACTGAACATAGGCACCACTACTCTTCGTCCAAATAAGCTCCGCGAGATTAACCATGCACCTTATAATAAGCTTGTCAAGTACTTCAATGACATGGACGATGAGGTAGTTGATGAGGTCTCCACCGATTCCGCGAGCACCGAAATCAGCAGCTGCTTGGTGCCTAAGTTGAATCTCGACCTTAGTCTCAGCCTAGCTCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

182

Amino Acids

20.92

Weight (kDa)

8.7

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 7.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 356, 502
AccI GTMKAC 1 cut(s) 157
AccII CGCG 2 cut(s) 387, 476
AciI CCGC 3 cut(s) 144, 385, 474
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 1 cut(s) 425
AgsI TTSAA 2 cut(s) 430, 514
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 7 cut(s) 204, 275, 343, 382, 415, 495, 539
AluI AGCT 7 cut(s) 204, 275, 343, 382, 415, 495, 539
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 466, 533
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 125, 492, 495
ApoI RAATTY 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 2 cut(s) 356, 502
BbsI GAAGAC 3 cut(s) 29, 66, 286
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 112, 482, 504
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 466, 533
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 126, 493, 496
BlsI GCNGC 3 cut(s) 127, 494, 497
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 358, 504
BmrFI CCNGG 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 525
BpiI GAAGAC 3 cut(s) 29, 66, 286
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 323
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 81
BseMII CTCAG 3 cut(s) 18, 152, 544
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 112, 482, 504
Bsh1236I CGCG 2 cut(s) 387, 476
BshNI GGYRCC 2 cut(s) 356, 502
BsiHKAI GWGCWC 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 466, 533
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 187, 223
BspACI CCGC 3 cut(s) 144, 385, 474
BspCNI CTCAG 3 cut(s) 19, 153, 543
BspFNI CGCG 2 cut(s) 387, 476
BspLI GGNNCC 2 cut(s) 358, 504
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 356, 502
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 187, 223
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 3 cut(s) 120, 213, 372
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 2 cut(s) 387, 476
BstKTI GATC 2 cut(s) 190, 226
BstMAI GTCTC 2 cut(s) 466, 533
BstMBI GATC 2 cut(s) 187, 223
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 288
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 2 cut(s) 387, 476
BstV1I GCAGC 3 cut(s) 112, 482, 504
BstV2I GAAGAC 3 cut(s) 29, 66, 286
BstX2I RGATCY 2 cut(s) 187, 223
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 187, 223
Bsu36I CCTNAGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 495
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 424
CviAII CATG 3 cut(s) 92, 398, 436
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
DpnI GATC 2 cut(s) 189, 225
DpnII GATC 2 cut(s) 187, 223
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 120, 213, 372
EarI CTCTTC 3 cut(s) 120, 213, 372
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 95, 401, 439
FaiI YATR 6 cut(s) 93, 243, 353, 399, 408, 437
FatI CATG 3 cut(s) 91, 397, 435
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 126, 493, 496
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 126, 493, 496
FspBI CTAG 1 cut(s) 536
GluI GCNGC 3 cut(s) 126, 493, 496
HgaI GACGC 1 cut(s) 125
Hin1II CATG 3 cut(s) 95, 401, 439
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 2 cut(s) 202, 413
HinfI GANTC 2 cut(s) 470, 514
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 518, 542
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 92, 285
HpyCH4V TGCA 2 cut(s) 128, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
Hsp92II CATG 3 cut(s) 95, 401, 439
Kzo9I GATC 2 cut(s) 187, 223
LmnI GCTCC 2 cut(s) 41, 387
LpnPI CCDG 9 cut(s) 77, 91, 114, 198, 220, 261, 273, 300, 304
Lsp1109I GCAGC 3 cut(s) 112, 482, 504
MaeI CTAG 1 cut(s) 536
MalI GATC 2 cut(s) 189, 225
MboI GATC 2 cut(s) 187, 223
MboII GAAGA 8 cut(s) 34, 71, 107, 224, 230, 291, 322, 359
MflI RGATCY 2 cut(s) 187, 223
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 2 cut(s) 109, 313
MnlI CCTC 5 cut(s) 191, 214, 298, 439, 451
MseI TTAA 3 cut(s) 192, 332, 393
MspA1I CMGCKG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 2 cut(s) 387, 476
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 2 cut(s) 187, 223
NlaIII CATG 3 cut(s) 95, 401, 439
NlaIV GGNNCC 2 cut(s) 358, 504
PfeI GAWTC 2 cut(s) 470, 514
PkrI GCNGC 3 cut(s) 127, 494, 497
PshAI GACNNNNGTC 1 cut(s) 525
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 358, 504
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 2 cut(s) 187, 223
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 192, 332, 393
SatI GCNGC 3 cut(s) 126, 493, 496
Sau3AI GATC 2 cut(s) 187, 223
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 482
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 2 cut(s) 109, 313
SsiI CCGC 3 cut(s) 144, 385, 474
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 250
TaqI TCGA 3 cut(s) 50, 157, 519
TasI AATT 2 cut(s) 109, 313
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 2 cut(s) 470, 514
Tru1I TTAA 3 cut(s) 192, 332, 393
Tru9I TTAA 3 cut(s) 192, 332, 393
TseI GCWGC 3 cut(s) 125, 492, 495
TspDTI ATGAA 2 cut(s) 230, 231
XapI RAATTY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.