Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006317.1

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

29040 .. 30256

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006317.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgaggaaaccctgctgcgacaagcaagacacgaacaaaggagcttggtcgaaacaagaagaccagaagctcatcgattacattcgcaaacatggtgagggttgttggcgtaccctccctcaagctgcaggccttcttcgatgcggtaaaagttgcagacttcggtggataaactatctacggccagaccttaaaagaggcaagtttgctgaagatgaagaagacctcatcattaaacttcatgcactcctaggcaatcggtggtcgcttattgctggaagattgccgggacgtacagacaatgaagtgaagaactattggaactcgcatttgagaagaaagcttatgaacatgggtatagatccaaacaaccatcgaccaaccaacactctcctccctcggcctcataatcatcatcaaagcccaccacaaacactaaaatcaccagctggttctggtatcaataattttaatcatgagccagtagtgatagagtccaaaagttcgcgtggtgatgatcaaaattgcgagcaagtatcggatggcagaagttgcttggaggatgactcttcttgtggcggtcatcacctgcctgatttaaaccttgatctcactgtccatctcagtgctcctaatttctcttcacctaatgatgatcatcaatgtctcattaaggagcttaatgagccaattcatcgtcctcatctcaacattagtgacccccctgaaatgttgattgggaccaagtcagcaatatttgcctcatctaccacgcttcctctcttcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

263

Amino Acids

29.8

Weight (kDa)

8.36

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	597
AccII	CGCG	1 cut(s)	508
AciI	CCGC	2 cut(s)	144, 579
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	231, 769
AfaI	GTAC	2 cut(s)	112, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	720, 752
AluBI	AGCT	6 cut(s)	44, 70, 125, 343, 449, 679
AluI	AGCT	6 cut(s)	44, 70, 125, 343, 449, 679
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	3 cut(s)	130, 182, 401
ApeKI	GCWGC	2 cut(s)	15, 125
AspA2I	CCTAGG	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	741
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	5 cut(s)	107, 435, 524, 578, 636
AvaII	GGWCC	1 cut(s)	741
AvrII	CCTAGG	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	66, 228
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	2, 112
BccI	CCATC	3 cut(s)	381, 536, 627
BceAI	ACGGC	1 cut(s)	197
BclI	TGATCA	2 cut(s)	517, 655
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	597
BisI	GCNGC	2 cut(s)	16, 126
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	2 cut(s)	17, 127
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	1 cut(s)	742
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	66, 228
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	250, 398
Bse1I	ACTGG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	250, 398
BseGI	GGATG	2 cut(s)	547, 568
BseJI	GATNNNNATC	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	637
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	2, 112
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	3 cut(s)	132, 184, 403
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	303, 754
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	2 cut(s)	303, 754
BsnI	GGCC	3 cut(s)	132, 184, 403
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	361, 517, 607, 655
BspACI	CCGC	2 cut(s)	144, 579
BspANI	GGCC	3 cut(s)	132, 184, 403
BspCNI	CTCAG	1 cut(s)	636
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	742
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	250, 398
BssMI	GATC	4 cut(s)	361, 517, 607, 655
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	3 cut(s)	574, 646, 788
BstAPI	GCANNNNNTGC	2 cut(s)	552, 758
BstC8I	GCNNGC	2 cut(s)	130, 530
BstDEI	CTNAG	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	547, 568
BstFNI	CGCG	1 cut(s)	508
BstKTI	GATC	4 cut(s)	364, 520, 610, 658
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	4 cut(s)	361, 517, 607, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	552, 685, 758
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	2, 112
BstV2I	GAAGAC	2 cut(s)	66, 228
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	132, 184, 403
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	547, 568
BtsIMutI	CAGTG	2 cut(s)	612, 631
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	130, 530
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	741
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	111, 294
CviAII	CATG	4 cut(s)	92, 242, 352, 476
CviQI	GTAC	2 cut(s)	111, 294
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	4 cut(s)	363, 519, 609, 657
DpnII	GATC	4 cut(s)	361, 517, 607, 655
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	3 cut(s)	574, 646, 788
EarI	CTCTTC	3 cut(s)	574, 646, 788
Eco130I	CCWWGG	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	2 cut(s)	231, 769
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	4 cut(s)	95, 245, 355, 479
FaiI	YATR	7 cut(s)	93, 243, 347, 353, 359, 408, 477
FaqI	GGGAC	2 cut(s)	303, 754
FatI	CATG	4 cut(s)	91, 241, 351, 475
FbaI	TGATCA	2 cut(s)	517, 655
Fnu4HI	GCNGC	2 cut(s)	16, 126
FokI	GGATG	2 cut(s)	554, 575
Fsp4HI	GCNGC	2 cut(s)	16, 126
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	16, 126
HaeIII	GGCC	3 cut(s)	132, 184, 403
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	4 cut(s)	95, 245, 355, 479
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	494, 566
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	5 cut(s)	107, 435, 524, 578, 636
Hpy188I	TCNGA	2 cut(s)	541, 788
Hpy188III	TCNNGA	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	128, 156, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	552, 685, 758
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	95, 245, 355, 479
Ksp22I	TGATCA	2 cut(s)	517, 655
Kzo9I	GATC	4 cut(s)	361, 517, 607, 655
LmnI	GCTCC	3 cut(s)	41, 634, 676
Lsp1109I	GCAGC	2 cut(s)	2, 112
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	4 cut(s)	363, 519, 609, 657
MboI	GATC	4 cut(s)	361, 517, 607, 655
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	4 cut(s)	466, 523, 634, 690
MlyI	GAGTC	2 cut(s)	503, 560
MseI	TTAA	6 cut(s)	192, 234, 471, 599, 672, 681
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	552, 685, 758
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	361, 517, 607, 655
NlaIII	CATG	4 cut(s)	95, 245, 355, 479
NlaIV	GGNNCC	1 cut(s)	742
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	716
PagI	TCATGA	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	745
PkrI	GCNGC	2 cut(s)	17, 127
PleI	GAGTC	2 cut(s)	502, 560
PpsI	GAGTC	2 cut(s)	502, 560
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	741
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	112, 295
RsaNI	GTAC	2 cut(s)	111, 294
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	6 cut(s)	192, 234, 471, 599, 672, 681
SatI	GCNGC	2 cut(s)	16, 126
Sau3AI	GATC	4 cut(s)	361, 517, 607, 655
Sau96I	GGNCC	1 cut(s)	741
SchI	GAGTC	2 cut(s)	503, 560
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	466, 523, 634, 690
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	2 cut(s)	144, 579
SspI	AATATT	1 cut(s)	756
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	50, 75, 139, 376
TasI	AATT	4 cut(s)	466, 523, 634, 690
Tru1I	TTAA	6 cut(s)	192, 234, 471, 599, 672, 681
Tru9I	TTAA	6 cut(s)	192, 234, 471, 599, 672, 681
TscAI	CASTG	2 cut(s)	619, 631
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	15, 125
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	5 cut(s)	230, 231, 318, 362, 683
TspRI	CASTG	2 cut(s)	619, 631
Tth111I	GACNNNGTC	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	741
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.