Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1724378 .. 1725307

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGAAACCCTGCTGCGATAAGCAAGACACAAACAAAGGAGCTTGGTCCAAGCAAGAAGACCTCAAGCTCATCGATTATATTCGTAAGCATGGCGAGGGTTGTTGGCGTACCCTTCCTCAGGCTGCAGGCCTACTTCGTTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGACCAGACCTCAAAAGAGGCAACTTTGCTGAAGATGAAGAACGATCTCATTGTCAAGCTTCATGCGCTCCTAGGCAACAGGTGGTCATTGATTGCTGGGAGATTGCCAGGACGTACAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.9

Weight (kDa)

9.14

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	6.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	8.2e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	112, 296
AfiI	CCNNNNNNNGG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	44, 70, 239
AluI	AGCT	3 cut(s)	44, 70, 239
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	15, 125
AspA2I	CCTAGG	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	48
AvrII	CCTAGG	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	2, 112
BccI	CCATC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	289
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	16, 126
BlnI	CCTAGG	1 cut(s)	251
BlsI	GCNGC	2 cut(s)	17, 127
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	134, 152
BseXI	GCAGC	2 cut(s)	2, 112
BseYI	CCCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	133, 153
BspDI	ATCGAT	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	120, 161
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	2, 112
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	111, 295
CviAII	CATG	2 cut(s)	92, 243
CviJI	RGCY	6 cut(s)	44, 70, 125, 132, 160, 239
CviKI_1	RGCY	6 cut(s)	44, 70, 125, 132, 160, 239
CviQI	GTAC	2 cut(s)	111, 295
DdeI	CTNAG	2 cut(s)	120, 161
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	2 cut(s)	95, 246
FaiI	YATR	3 cut(s)	81, 93, 244
FatI	CATG	2 cut(s)	91, 242
Fnu4HI	GCNGC	2 cut(s)	16, 126
Fsp4HI	GCNGC	2 cut(s)	16, 126
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	16, 126
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	95, 246
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	120, 161
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	95, 246
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	41, 253
LpnPI	CCDG	8 cut(s)	25, 107, 114, 198, 245, 262, 274, 301
Lsp1109I	GCAGC	2 cut(s)	2, 112
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	293
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	3 cut(s)	71, 224, 230
MnlI	CCTC	5 cut(s)	74, 91, 129, 191, 200
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	95, 246
PceI	AGGCCT	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	17, 127
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	112, 296
RsaNI	GTAC	2 cut(s)	111, 295
SatI	GCNGC	2 cut(s)	16, 126
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	7 cut(s)	46, 66, 72, 192, 241, 264, 296
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	251
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	15, 125
TspDTI	ATGAA	2 cut(s)	231, 231
VpaK11BI	GGWCC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.