Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

20824651 .. 20826484

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGACGTTGTCAGAAAACTTTGTTATATTGTTCTCTAGCTCCCTTCACTTGGGCAGCTTGAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCATTTGCTGTAAGAAGAACTTCAATATTACTACTGTAATGAGGAAACCTTGCTGTGAAAAGAAAAAGACGAACAAAGGAGCATGGTCGAAGCAAGAAGATAAGAAGCTCACTGAATTTGTTGAAAAAAATGGCGAAGGAAGCTGGCGCTCCCTTCCACTTGCTGCAGGCTTGCTCCGTTGTGGAAAGAGTTGTAGATTAAGATGGGTAAATTATCTAAGGCCAAACTTGAAACGTGGCAACTTTGGTGAAGATGAAGAAGACCTAATCATCAAGCTCCATGCACTTCTTGGAAACAGGTGGTCGCTAATCGCTGGAAGATTGCCGGGACGAACTGACAATGAAGTGAAGAATTACTGGAACACTCATCTAAGGAGAAAACTAATACAAATGGGAGTTGACCCCAATAACCATCGCATAGGACACACACAGAATATTGGCCTTTCAAAATCATCATTTGGCTCCAGAAAAGTAAATCATCCATGTAAAGCAGCGAATTCTCAAGGGTACAACGACTCTGATGATCATCAGAAACCATTTACAGATTCTGCAAGTGGCCCGGAAAGCAACACAAGCTGCAGTGGTTTGCCTGACCTAAATCTTGATCTCACAATAGGCCTTCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

248

Amino Acids

27.48

Weight (kDa)

9.39

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	230, 610
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	139, 239, 346, 561
AluBI	AGCT	6 cut(s)	39, 57, 223, 258, 391, 690
AluI	AGCT	6 cut(s)	39, 57, 223, 258, 391, 690
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	335, 553, 670, 730
ApeKI	GCWGC	4 cut(s)	54, 278, 605, 690
ApoI	RAATTY	2 cut(s)	230, 610
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	671
AsuC2I	CCSGG	2 cut(s)	441, 674
AsuHPI	GGTGA	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	66, 265, 617, 677
BccI	CCATC	2 cut(s)	312, 534
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	2 cut(s)	441, 674
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	2 cut(s)	279, 691
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	4 cut(s)	55, 279, 606, 691
BlsI	GCNGC	4 cut(s)	56, 280, 607, 692
Bme1390I	CCNGG	2 cut(s)	441, 674
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	2 cut(s)	441, 674
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	1 cut(s)	562
BpuEI	CTTGAG	2 cut(s)	79, 600
BpuMI	CCSGG	2 cut(s)	441, 674
BsaBI	GATNNNNATC	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	639
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	66, 265, 617, 677
BshFI	GGCC	4 cut(s)	337, 555, 672, 732
BsiSI	CCGG	2 cut(s)	440, 674
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	4 cut(s)	337, 555, 672, 732
Bsp143I	GATC	2 cut(s)	637, 718
BspANI	GGCC	4 cut(s)	337, 555, 672, 732
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	2 cut(s)	283, 695
BsrI	ACTGG	1 cut(s)	476
BssMI	GATC	2 cut(s)	637, 718
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	260, 283, 287
BstDEI	CTNAG	2 cut(s)	332, 485
BstF5I	GGATG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	640, 721
BstMBI	GATC	2 cut(s)	637, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 678, 687
BstSCI	CCNGG	2 cut(s)	439, 672
BstSFI	CTRYAG	2 cut(s)	279, 691
BstV1I	GCAGC	4 cut(s)	66, 265, 617, 677
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	337, 555, 672, 732
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	225, 700
Cac8I	GCNNGC	3 cut(s)	260, 283, 287
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	3 cut(s)	198, 395, 597
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	332, 485
DpnI	GATC	2 cut(s)	639, 720
DpnII	GATC	2 cut(s)	637, 718
Eco147I	AGGCCT	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	610
FaeI	CATG	3 cut(s)	201, 398, 600
FaiI	YATR	5 cut(s)	26, 199, 396, 533, 598
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	3 cut(s)	197, 394, 596
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	55, 279, 606, 691
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	4 cut(s)	55, 279, 606, 691
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	4 cut(s)	55, 279, 606, 691
GsuI	CTGGAG	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	337, 555, 672, 732
HapII	CCGG	2 cut(s)	440, 674
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	201, 398, 600
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	629, 659
HpaII	CCGG	2 cut(s)	440, 674
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	13, 634, 645
Hpy188III	TCNNGA	2 cut(s)	579, 716
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	4 cut(s)	53, 245, 278, 743
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	5, 349
HpyCH4V	TGCA	5 cut(s)	117, 281, 398, 665, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 678, 687
HpyF3I	CTNAG	2 cut(s)	332, 485
HpySE526I	ACGT	2 cut(s)	5, 349
Hsp92II	CATG	3 cut(s)	201, 398, 600
HspAI	GCGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	637, 718
LmnI	GCTCC	6 cut(s)	44, 194, 269, 294, 396, 581
LpnPI	CCDG	9 cut(s)	244, 267, 397, 414, 453, 457, 592, 687, 717
Lsp1109I	GCAGC	4 cut(s)	66, 265, 617, 677
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	2 cut(s)	5, 349
MalI	GATC	2 cut(s)	639, 720
MboI	GATC	2 cut(s)	637, 718
MboII	GAAGA	7 cut(s)	142, 224, 377, 383, 386, 444, 475
MluCI	AATT	4 cut(s)	230, 325, 466, 610
MlyI	GAGTC	1 cut(s)	623
MnlI	CCTC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	314, 742
MspI	CCGG	2 cut(s)	440, 674
MspR9I	CCNGG	2 cut(s)	441, 674
MwoI	GCNNNNNNNGC	3 cut(s)	255, 678, 687
NciI	CCSGG	2 cut(s)	441, 674
NdeII	GATC	2 cut(s)	637, 718
NlaIII	CATG	3 cut(s)	201, 398, 600
NlaIV	GGNNCC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	659
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	56, 280, 607, 692
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	671
PstI	CTGCAG	2 cut(s)	283, 695
PstNI	CAGNNNCTG	1 cut(s)	662
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	2 cut(s)	314, 742
SatI	GCNGC	4 cut(s)	55, 279, 606, 691
Sau3AI	GATC	2 cut(s)	637, 718
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	2 cut(s)	441, 674
SfcI	CTRYAG	2 cut(s)	279, 691
SmlI	CTYRAG	2 cut(s)	58, 615
SmoI	CTYRAG	2 cut(s)	58, 615
Sse9I	AATT	4 cut(s)	230, 325, 466, 610
SseBI	AGGCCT	1 cut(s)	732
SspI	AATATT	2 cut(s)	142, 550
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	439, 672
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	8, 352
TaqI	TCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	230, 325, 466, 610
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	2 cut(s)	314, 742
Tru9I	TTAA	2 cut(s)	314, 742
TscAI	CASTG	2 cut(s)	232, 700
TseI	GCWGC	4 cut(s)	54, 278, 605, 690
TspDTI	ATGAA	2 cut(s)	384, 471
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	232, 700
Tth111I	GACNNNGTC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	230, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.