FvH4_5g17120
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001619
Physical Location & Seq
Forward (+)
9766084 .. 9767766
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17120.t1

Sequence Viewer

Length: 576 bp
ATGAGGAAACCTTGCTGTGAGAAGAAGACGACCAATAAGGGAGCATGGTCGAAGCAAGAAGATGAGAAGCTCACTCAATACATTCAAAAACACGGCGAAGGAAGCTGGCGCTCTCTTCCCGTCGCTGCAGGGTTGCTCCGTTGTGGAAAGAGTTGCAGACTGAGGTGGGTAAATTATCTAAGGCCAGACCTGAAACGTGGCAACTTTGGTGAAGATGAAGAGGACCTCATCATCAAGCTCCATGCACTTCTAGGGAACAGGTGGTCGCTAATTGCTGGAAGATTGCCCGGCCGGACCGACAATGAAGTGAAGAATTACTGGAATACTCATCTAAGGAGAAAGCTCATGCATTTGGGAATTGACCCCAACAACCATCGCATAGGACACAATATTTGCCTCAACAAGCAGGTTAATCATCCATGTAAATCAGCAAACTCACAAGCAAATAACGATGATGCAGACGATTCCGATGATCCATTGCTGGATTCCACAAGTTCCGGCCCCGAAAGCAACATAAGTTGTTCTTTGCCTGACTTGAATCTTGATCTCACAATTGGCCTTCCATGGTCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.61

Weight (kDa)

8.46

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 3.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 9.8e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 289
AgsI TTSAA 2 cut(s) 86, 538
AluBI AGCT 4 cut(s) 70, 105, 238, 343
AluI AGCT 4 cut(s) 70, 105, 238, 343
AlwI GGATC 1 cut(s) 467
AoxI GGCC 4 cut(s) 182, 289, 499, 556
ApeKI GCWGC 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 223, 294, 500, 567
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 3 cut(s) 223, 294, 567
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 381
BceAI ACGGC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 3 cut(s) 223, 294, 567
BmgT120I GGNCC 4 cut(s) 223, 294, 500, 567
BmiI GGNNCC 2 cut(s) 502, 569
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 323
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 4 cut(s) 184, 291, 501, 558
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 3 cut(s) 288, 292, 498
BslFI GGGAC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 4 cut(s) 184, 291, 501, 558
Bsp143I GATC 2 cut(s) 472, 544
Bsp19I CCATGG 1 cut(s) 563
BspANI GGCC 4 cut(s) 184, 291, 501, 558
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 502, 569
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 2 cut(s) 472, 544
BssT1I CCWWGG 1 cut(s) 563
Bst6I CTCTTC 2 cut(s) 120, 213
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 161, 179, 332
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 475, 547
BstMBI GATC 2 cut(s) 472, 544
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 102, 507
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 4 cut(s) 184, 291, 501, 558
BtgI CCRYGG 1 cut(s) 563
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 4 cut(s) 223, 294, 500, 567
CpoI CGGWCCG 1 cut(s) 294
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 5 cut(s) 45, 242, 346, 420, 564
CviJI RGCY 8 cut(s) 70, 105, 184, 238, 291, 343, 501, 558
CviKI_1 RGCY 8 cut(s) 70, 105, 184, 238, 291, 343, 501, 558
DdeI CTNAG 3 cut(s) 161, 179, 332
DpnI GATC 2 cut(s) 474, 546
DpnII GATC 2 cut(s) 472, 544
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 120, 213
EarI CTCTTC 2 cut(s) 120, 213
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 563
Eco47I GGWCC 3 cut(s) 223, 294, 567
Eco52I CGGCCG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 5 cut(s) 48, 245, 349, 423, 567
FaiI YATR 7 cut(s) 46, 243, 347, 380, 421, 515, 565
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FaqI GGGAC 1 cut(s) 553
FatI CATG 5 cut(s) 44, 241, 345, 419, 563
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 4 cut(s) 184, 291, 501, 558
HapII CCGG 3 cut(s) 288, 292, 498
HhaI GCGC 1 cut(s) 111
Hin1II CATG 5 cut(s) 48, 245, 349, 423, 567
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 3 cut(s) 464, 485, 538
HpaII CCGG 3 cut(s) 288, 292, 498
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 1 cut(s) 542
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 92, 569
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 128, 156, 245, 349, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 507
HpyF3I CTNAG 3 cut(s) 161, 179, 332
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 5 cut(s) 48, 245, 349, 423, 567
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 472, 544
LmnI GCTCC 3 cut(s) 41, 141, 243
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 196
MalI GATC 2 cut(s) 474, 546
MboI GATC 2 cut(s) 472, 544
MboII GAAGA 8 cut(s) 34, 37, 71, 107, 224, 230, 291, 322
MfeI CAATTG 1 cut(s) 552
MluCI AATT 5 cut(s) 172, 270, 313, 357, 552
MnlI CCTC 4 cut(s) 156, 214, 236, 407
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 411
MspI CCGG 3 cut(s) 288, 292, 498
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 102, 507
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 563
NdeII GATC 2 cut(s) 472, 544
NlaIII CATG 5 cut(s) 48, 245, 349, 423, 567
NlaIV GGNNCC 2 cut(s) 502, 569
NsiI ATGCAT 1 cut(s) 351
PfeI GAWTC 3 cut(s) 464, 485, 538
PkrI GCNGC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 502, 569
PspPI GGNCC 4 cut(s) 223, 294, 500, 567
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 472, 544
Sau96I GGNCC 4 cut(s) 223, 294, 500, 567
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 3 cut(s) 223, 294, 567
Sse9I AATT 5 cut(s) 172, 270, 313, 357, 552
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 563
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 311
TasI AATT 5 cut(s) 172, 270, 313, 357, 552
TfiI GAWTC 3 cut(s) 464, 485, 538
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 231, 318
TspGWI ACGGA 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 223, 294, 567
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.