Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

30884180 .. 30886207

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G323400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGAAACCCTGCTGCGATAAGCAAGACACAAACAGAGGAGCTTGGTCCAAGCAAGAAGACCTCAAGCTCATCGATTACATTCGCAAACATGGCGAGGGTTGTTGGCGTACCCTTCCTCAGGCTGCAGGCCTACTTCGTTGCGGTAAAAGCTGTAGGCTGAGATGGATAAACTATCTACGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCGTTAAACTTCATGCACTCCTAGGCAACCGGTGGTCGTTGATTGCTGGGAGATTGCCGGGACGTACAGACAATGAAGTGAAGAACTATTGGAACTCTCATTTGAGAAGAAAGCTTATAAGCATGGGAATAGATCCAAATAACCACCGACCGAACACATTTAATCTCCCTCGCCCTCATCATAAAAACTCACAAGCCATTAGCAGCACTGCAAAATTGTCTGCAGGTTTGAAAACCCCAACGAATGATCAGCCAGCAAGATCCGGTGGCAATAATTGTGACCAAGTATCGGACGGTACAAGTTGCTTGGAGGATGAATCTTGTGGCCATCAGCTGCCTGATTTAAACCTTGACCTCACAATGACGGCTCCTTTGTCTAATTCAGAACCTGAAAATCTCAAGGAGGAGCAAAATCTTATGAGTCTAAAATGTCATCGGAATTTACCCCGTCCACCAATATCTTTCCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

8.98

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	443
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	356, 483
AcoI	YGGCCR	2 cut(s)	182, 553
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	112, 295, 526
AfiI	CCNNNNNNNGG	2 cut(s)	121, 517
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	460
AluBI	AGCT	5 cut(s)	44, 70, 153, 343, 562
AluI	AGCT	5 cut(s)	44, 70, 153, 343, 562
AlwI	GGATC	2 cut(s)	356, 483
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	130, 182, 553
ApeKI	GCWGC	4 cut(s)	15, 125, 432, 562
ApoI	RAATTY	1 cut(s)	667
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AsiGI	ACCGGT	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	48
AvrII	CCTAGG	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	2, 112, 444, 549
BccI	CCATC	2 cut(s)	159, 564
BceAI	ACGGC	2 cut(s)	197, 609
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	3 cut(s)	126, 154, 450
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	16, 126, 433, 563
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	4 cut(s)	17, 127, 434, 564
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	50, 611
BpuMI	CCSGG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	2 cut(s)	258, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 517
Bse118I	RCCGGY	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	121, 517
BseMII	CTCAG	2 cut(s)	134, 152
BseRI	GAGGAG	2 cut(s)	54, 647
BseXI	GCAGC	4 cut(s)	2, 112, 444, 549
BseYI	CCCAGC	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	132, 184, 555
BshTI	ACCGGT	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	259, 287, 492
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	121, 517
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	3 cut(s)	132, 184, 555
Bsp143I	GATC	4 cut(s)	223, 361, 475, 488
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	3 cut(s)	132, 184, 555
BspCNI	CTCAG	2 cut(s)	133, 153
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	2 cut(s)	130, 454
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	356, 483
BsrFI	RCCGGY	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	223, 361, 475, 488
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	130, 483
BstDEI	CTNAG	2 cut(s)	120, 161
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	4 cut(s)	226, 364, 478, 491
BstMBI	GATC	4 cut(s)	223, 361, 475, 488
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 150
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	3 cut(s)	126, 154, 450
BstV1I	GCAGC	4 cut(s)	2, 112, 444, 549
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	223, 361, 488
BstYI	RGATCY	3 cut(s)	223, 361, 488
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	132, 184, 555
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	130, 483
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	111, 294, 525
CspAI	ACCGGT	1 cut(s)	258
CviAII	CATG	3 cut(s)	92, 242, 352
CviQI	GTAC	3 cut(s)	111, 294, 525
DdeI	CTNAG	2 cut(s)	120, 161
DpnI	GATC	4 cut(s)	225, 363, 477, 490
DpnII	GATC	4 cut(s)	223, 361, 475, 488
DraI	TTTAAA	1 cut(s)	573
EaeI	YGGCCR	2 cut(s)	182, 553
Eco130I	CCWWGG	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	95, 245, 355
FaiI	YATR	6 cut(s)	93, 243, 347, 353, 411, 647
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	3 cut(s)	91, 241, 351
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	16, 126, 433, 563
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	16, 126, 433, 563
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	4 cut(s)	16, 126, 433, 563
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	132, 184, 555
HapII	CCGG	3 cut(s)	259, 287, 492
Hin1II	CATG	3 cut(s)	95, 245, 355
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	545, 649
HpaII	CCGG	3 cut(s)	259, 287, 492
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	3 cut(s)	520, 613, 666
Hpy188III	TCNNGA	1 cut(s)	699
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	128, 245, 440, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 150
HpyF3I	CTNAG	2 cut(s)	120, 161
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	95, 245, 355
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	223, 361, 475, 488
LmnI	GCTCC	3 cut(s)	41, 601, 634
Lsp1109I	GCAGC	4 cut(s)	2, 112, 444, 549
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	4 cut(s)	225, 363, 477, 490
MboI	GATC	4 cut(s)	223, 361, 475, 488
MboII	GAAGA	6 cut(s)	71, 224, 230, 233, 322, 348
MflI	RGATCY	3 cut(s)	223, 361, 488
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	443, 502, 607, 667
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	192, 234, 390, 572
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	3 cut(s)	259, 287, 492
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	93, 150
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	223, 361, 475, 488
NlaIII	CATG	3 cut(s)	95, 245, 355
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	545
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	17, 127, 434, 564
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	2 cut(s)	130, 454
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	3 cut(s)	223, 361, 488
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	3 cut(s)	112, 295, 526
RsaNI	GTAC	3 cut(s)	111, 294, 525
SaqAI	TTAA	4 cut(s)	192, 234, 390, 572
SatI	GCNGC	4 cut(s)	16, 126, 433, 563
Sau3AI	GATC	4 cut(s)	223, 361, 475, 488
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	288
SfcI	CTRYAG	3 cut(s)	126, 154, 450
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	65, 626
SmoI	CTYRAG	2 cut(s)	65, 626
Sse9I	AATT	4 cut(s)	443, 502, 607, 667
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	394
TasI	AATT	4 cut(s)	443, 502, 607, 667
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	4 cut(s)	192, 234, 390, 572
Tru9I	TTAA	4 cut(s)	192, 234, 390, 572
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	15, 125, 432, 562
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	230, 231, 318, 558
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	667
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.