MD06G1229600.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001619
Physical Location & Seq
Forward (+)
35921077 .. 35923312
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1229600.v1.1.491

Sequence Viewer

Length: 561 bp
ATGAGGAAGCCTTGTTATGAGAAGTATGAGATAAACAAAGGAGCATGGTCTAAGCAAGAAGATCAGAAACTCATTGACTACATCCAGAAACATGGCGAAGGATGTTGGAATTCTCTTCCTCATGCTGCAGGGTTGAGTCGGTGTGGTAAAAGTTGTCGACTGAGGTGGATAAACTATCTAAGGCCAGATCTTAAACGCGAAAGTATTCGAGAAGATGAAGAGGACCTCATCATCAGGCTTCATGCGCTCCTTGGGAATAGGTGGTCACTGATAGCCGGAAGACTGCCGGGAAGGACGGACAATGAGGTGAAGAATTACTGGAACACTCATATAAGGAAAAAGTTACTAAAGATGGGAAGTACTCTTGATCCCAAAAAACCCCATCACCACAATGATCCTCACTTGAGAAAAGGCACTACTGCTACTGTGCCACTACTGCAGCCTGATACCAGTTCACCAATATCATTTGCGTTATCGTCGTCAGATTCCATGAGTACTGGTGCTGAAATTCACAGCAACAAAAGCGGGTTGCCTGACCTGAATCTCGACCTCTCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

187

Amino Acids

21.22

Weight (kDa)

9.28

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 1.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 73 2.6e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 110 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 6.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 198
AciI CCGC 1 cut(s) 525
AclWI GGATC 2 cut(s) 362, 389
AcsI RAATTY 2 cut(s) 109, 507
AfaI GTAC 2 cut(s) 361, 496
AlwI GGATC 2 cut(s) 362, 389
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 125, 439
ApoI RAATTY 2 cut(s) 109, 507
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 319, 377, 447
AvaII GGWCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 112, 451
BccI CCATC 2 cut(s) 346, 390
BcnI CCSGG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 126, 437
BglII AGATCT 1 cut(s) 187
BisI GCNGC 2 cut(s) 126, 440
BlsI GCNGC 2 cut(s) 127, 441
BmcAI AGTACT 2 cut(s) 361, 496
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 323, 450, 502
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 81, 107
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 3 cut(s) 323, 450, 502
BseXI GCAGC 2 cut(s) 112, 451
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 276, 287
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 4 cut(s) 61, 187, 367, 394
BspACI CCGC 1 cut(s) 525
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 198
BspMAI CTGCAG 2 cut(s) 130, 441
BspPI GGATC 2 cut(s) 362, 389
BsrI ACTGG 3 cut(s) 323, 450, 502
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 61, 187, 367, 394
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 2 cut(s) 120, 213
BstDEI CTNAG 3 cut(s) 51, 161, 179
BstF5I GGATG 2 cut(s) 81, 107
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 4 cut(s) 64, 190, 370, 397
BstMBI GATC 4 cut(s) 61, 187, 367, 394
BstMWI GCNNNNNNNGC 3 cut(s) 244, 436, 522
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 2 cut(s) 126, 437
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 112, 451
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 81, 107
BtsIMutI CAGTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 360, 495
CviAII CATG 5 cut(s) 45, 92, 122, 242, 490
CviJI RGCY 5 cut(s) 10, 184, 238, 275, 442
CviKI_1 RGCY 5 cut(s) 10, 184, 238, 275, 442
CviQI GTAC 2 cut(s) 360, 495
DdeI CTNAG 3 cut(s) 51, 161, 179
DpnI GATC 4 cut(s) 63, 189, 369, 396
DpnII GATC 4 cut(s) 61, 187, 367, 394
Eam1104I CTCTTC 2 cut(s) 120, 213
EarI CTCTTC 2 cut(s) 120, 213
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 48, 95, 125, 245, 493
FaiI YATR 9 cut(s) 18, 27, 46, 93, 123, 243, 330, 332, 491
FatI CATG 5 cut(s) 44, 91, 121, 241, 489
FauI CCCGC 1 cut(s) 518
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 126, 440
FokI GGATG 2 cut(s) 68, 114
Fsp4HI GCNGC 2 cut(s) 126, 440
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 126, 440
HaeIII GGCC 1 cut(s) 184
HapII CCGG 2 cut(s) 276, 287
HhaI GCGC 1 cut(s) 247
Hin1II CATG 5 cut(s) 48, 95, 125, 245, 493
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 3 cut(s) 136, 485, 541
HpaII CCGG 2 cut(s) 276, 287
HphI GGTGA 3 cut(s) 319, 377, 447
Hpy166II GTNNAC 2 cut(s) 158, 455
Hpy188I TCNGA 2 cut(s) 66, 484
Hpy188III TCNNGA 4 cut(s) 85, 209, 365, 545
Hpy8I GTNNAC 2 cut(s) 158, 455
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 92, 285
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 128, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 436, 522
HpyF3I CTNAG 3 cut(s) 51, 161, 179
Hsp92II CATG 5 cut(s) 48, 95, 125, 245, 493
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 61, 187, 367, 394
LmnI GCTCC 2 cut(s) 41, 252
Lsp1109I GCAGC 2 cut(s) 112, 451
MaeIII GTNAC 2 cut(s) 264, 342
MalI GATC 4 cut(s) 63, 189, 369, 396
MboI GATC 4 cut(s) 61, 187, 367, 394
MboII GAAGA 6 cut(s) 71, 107, 224, 230, 291, 322
MflI RGATCY 1 cut(s) 187
MluCI AATT 3 cut(s) 109, 313, 507
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 7 cut(s) 129, 156, 214, 236, 298, 408, 560
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 2 cut(s) 276, 287
MspR9I CCNGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 244, 436, 522
NciI CCSGG 1 cut(s) 288
NdeII GATC 4 cut(s) 61, 187, 367, 394
NlaIII CATG 5 cut(s) 48, 95, 125, 245, 493
NmuCI GTSAC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 485, 541
PkrI GCNGC 2 cut(s) 127, 441
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 2 cut(s) 130, 441
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 361, 496
RsaNI GTAC 2 cut(s) 360, 495
RseI CAYNNNNRTG 1 cut(s) 390
SalI GTCGAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 126, 440
Sau3AI GATC 4 cut(s) 61, 187, 367, 394
Sau96I GGNCC 1 cut(s) 223
ScaI AGTACT 2 cut(s) 361, 496
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 288
SetI ASST 6 cut(s) 167, 228, 263, 309, 540, 552
SfcI CTRYAG 2 cut(s) 126, 437
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 3 cut(s) 109, 313, 507
SsiI CCGC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 157, 208, 546
TasI AATT 3 cut(s) 109, 313, 507
TatI WGTACW 2 cut(s) 359, 494
TfiI GAWTC 2 cut(s) 485, 541
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 2 cut(s) 125, 439
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 230, 231
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 109, 507
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 204
ZrmI AGTACT 2 cut(s) 361, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.