Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

17616595 .. 17618165

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G230800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGGAAACCTTGCTGTGAGAAGAAAAAGACGAACAAAGGAGCATGGTCCAAGCAAGAAGATGAGAAGCTCAGTCAGTATATTCAAAAACACGGCGAAGGTAGCTGGCGCTCCATACCACTGGCTGCAGGCTTGCATCGGTGTGGAAAGAGTTGCAGACTGAGATGGGTAAATTATCTAAGGCCAGACTTGAAACGTGGCAACTTTGGTGAGGATGAAGAGGACCTCATTATCAAGCTCCATGCACTTCTTGGAAACAGGTGGTCATTAATTGCTGGAAGATTGCCCGGACGGACTGACAATGAAGTGAAGAATTACTGGAACACTCATCTAAAGAGAAAACTAATACAGATGGGAGTAGACCCAAATAACCATCGGATAGGGCACAATTTTGGCCACACTAAATCATTTGGCTCCAGGATTAATACAAATGATCAGCCAAGTGTAAATTCTCACTCTGATGATCCATTGTTAGATTCTACAAGTGAACCCGAAAGCAACACAAGCTGCAGTGCTTTGCCCGACCTCAATCTTGATCTCACTATAGGCCTTCCAATTTCATTGGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

191

Amino Acids

21.51

Weight (kDa)

9.11

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	86, 193
AjnI	CCWGG	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	433, 465
AluBI	AGCT	4 cut(s)	70, 105, 238, 507
AluI	AGCT	4 cut(s)	70, 105, 238, 507
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	182, 394, 547
ApeKI	GCWGC	2 cut(s)	125, 507
ApoI	RAATTY	1 cut(s)	448
AseI	ATTAAT	2 cut(s)	269, 423
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	48, 223
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	48, 223
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	112, 494
BccI	CCATC	3 cut(s)	159, 346, 381
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	288
BfmI	CTRYAG	3 cut(s)	126, 508, 543
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	2 cut(s)	126, 508
BlsI	GCNGC	2 cut(s)	127, 509
Bme1390I	CCNGG	2 cut(s)	288, 418
Bme18I	GGWCC	2 cut(s)	48, 223
BmgT120I	GGNCC	2 cut(s)	48, 223
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	288, 418
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	126, 323
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	85, 152
BseNI	ACTGG	2 cut(s)	126, 323
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	112, 494
BshFI	GGCC	3 cut(s)	184, 396, 549
BsiSI	CCGG	1 cut(s)	288
BsnI	GGCC	3 cut(s)	184, 396, 549
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	433, 463, 535
BspANI	GGCC	3 cut(s)	184, 396, 549
BspCNI	CTCAG	2 cut(s)	84, 153
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	2 cut(s)	130, 512
BspPI	GGATC	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	126, 323
BssMI	GATC	3 cut(s)	433, 463, 535
Bst2UI	CCWGG	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	107, 130, 134
BstDEI	CTNAG	3 cut(s)	71, 161, 179
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	436, 466, 538
BstMBI	GATC	3 cut(s)	433, 463, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 504
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	286, 416
BstSFI	CTRYAG	3 cut(s)	126, 508, 543
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	112, 494
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	184, 396, 549
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	119, 517
Cac8I	GCNNGC	3 cut(s)	107, 130, 134
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	48, 223
CviAII	CATG	2 cut(s)	45, 242
DdeI	CTNAG	3 cut(s)	71, 161, 179
DpnI	GATC	3 cut(s)	435, 465, 537
DpnII	GATC	3 cut(s)	433, 463, 535
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	48, 223
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	416
FaeI	CATG	2 cut(s)	48, 245
FaiI	YATR	5 cut(s)	46, 81, 116, 243, 545
FatI	CATG	2 cut(s)	44, 241
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	126, 508
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	126, 508
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	2 cut(s)	126, 508
GsuI	CTGGAG	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	184, 396, 549
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	48, 245
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	361, 488
Hpy188I	TCNGA	2 cut(s)	378, 460
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	2 cut(s)	361, 488
HpyAV	CCTTC	2 cut(s)	92, 560
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	128, 136, 156, 245, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 504
HpyF3I	CTNAG	3 cut(s)	71, 161, 179
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	48, 245
HspAI	GCGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	433, 463, 535
LmnI	GCTCC	4 cut(s)	41, 116, 243, 419
Lsp1109I	GCAGC	2 cut(s)	112, 494
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	196
MalI	GATC	3 cut(s)	435, 465, 537
MboI	GATC	3 cut(s)	433, 463, 535
MboII	GAAGA	5 cut(s)	34, 71, 230, 291, 322
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	6 cut(s)	172, 270, 313, 388, 448, 555
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	4 cut(s)	205, 214, 236, 536
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	269, 423
MslI	CAYNNNNRTG	2 cut(s)	141, 459
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	288, 418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	102, 504
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	433, 463, 535
NlaIII	CATG	2 cut(s)	48, 245
NlaIV	GGNNCC	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	127, 509
PpuMI	RGGWCCY	1 cut(s)	223
PshBI	ATTAAT	2 cut(s)	269, 423
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	48, 223
PspPPI	RGGWCCY	1 cut(s)	223
PstI	CTGCAG	2 cut(s)	130, 512
RseI	CAYNNNNRTG	2 cut(s)	141, 459
SaqAI	TTAA	2 cut(s)	269, 423
SatI	GCNGC	2 cut(s)	126, 508
Sau3AI	GATC	3 cut(s)	433, 463, 535
Sau96I	GGNCC	2 cut(s)	48, 223
ScrFI	CCNGG	2 cut(s)	288, 418
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	3 cut(s)	126, 508, 543
SinI	GGWCC	2 cut(s)	48, 223
SmiMI	CAYNNNNRTG	2 cut(s)	141, 459
Sse9I	AATT	6 cut(s)	172, 270, 313, 388, 448, 555
SseBI	AGGCCT	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	286, 416
TaiI	ACGT	1 cut(s)	199
TasI	AATT	6 cut(s)	172, 270, 313, 388, 448, 555
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	269, 423
Tru9I	TTAA	2 cut(s)	269, 423
TscAI	CASTG	2 cut(s)	126, 517
TseI	GCWGC	2 cut(s)	125, 507
TspDTI	ATGAA	3 cut(s)	231, 318, 549
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	126, 517
VpaK11BI	GGWCC	2 cut(s)	48, 223
VspI	ATTAAT	2 cut(s)	269, 423
XapI	RAATTY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.