MD06G1064300.v1.1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001619
Physical Location & Seq
Reverse (-)
13167506 .. 13167838
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1064300.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGTTTTCTGCTTGTTTTGGACATATAGGTGGTCCAAGATTGCAGGCAGATTGCCAGGGAGAACAGATAATGAGATCAAGAATCATTGGAACACCCATATCAAGAAAAAGCTGCTTAGGATGGGAATTGATCCTGTCACGCATGAACCCCTCCACAAAGAAGAAGAGTTGCCTTCCAATATTAAGGAAAATAACTCATCATCATCTTCCCATGATCATGATGATCATGACAATAATTTGCCAGCTGATAAGTCTATAAATGGTGTTCACAATTCACAAGAAAATGATCAAAACGTGGTGAATTCATCAGGATCGGAGGGCATAAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

111

Amino Acids

12.54

Weight (kDa)

6.02

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 33 7.2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 125, 319
AcsI RAATTY 1 cut(s) 301
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 112, 245
AluI AGCT 2 cut(s) 112, 245
AlwI GGATC 2 cut(s) 125, 319
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 3 cut(s) 214, 223, 286
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 99
Bsp143I GATC 6 cut(s) 75, 130, 214, 223, 286, 311
BspHI TCATGA 2 cut(s) 217, 226
BspPI GGATC 2 cut(s) 125, 319
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 6 cut(s) 75, 130, 214, 223, 286, 311
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 46, 243
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 6 cut(s) 78, 133, 217, 226, 289, 314
BstMBI GATC 6 cut(s) 75, 130, 214, 223, 286, 311
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 46, 243
CciI TCATGA 2 cut(s) 217, 226
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 4 cut(s) 143, 212, 218, 227
CviJI RGCY 2 cut(s) 112, 245
CviKI_1 RGCY 2 cut(s) 112, 245
DdeI CTNAG 1 cut(s) 116
DpnI GATC 6 cut(s) 77, 132, 216, 225, 288, 313
DpnII GATC 6 cut(s) 75, 130, 214, 223, 286, 311
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 146, 215, 221, 230
FatI CATG 4 cut(s) 142, 211, 217, 226
FbaI TGATCA 3 cut(s) 214, 223, 286
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
Hin1II CATG 4 cut(s) 146, 215, 221, 230
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 5 cut(s) 79, 103, 218, 227, 309
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 4 cut(s) 146, 215, 221, 230
Ksp22I TGATCA 3 cut(s) 214, 223, 286
Kzo9I GATC 6 cut(s) 75, 130, 214, 223, 286, 311
LpnPI CCDG 6 cut(s) 30, 42, 69, 147, 255, 294
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 136
MalI GATC 6 cut(s) 77, 132, 216, 225, 288, 313
MboI GATC 6 cut(s) 75, 130, 214, 223, 286, 311
MboII GAAGA 3 cut(s) 173, 176, 198
MluCI AATT 4 cut(s) 126, 235, 271, 301
MnlI CCTC 2 cut(s) 161, 310
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 28, 216
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NdeII GATC 6 cut(s) 75, 130, 214, 223, 286, 311
NlaIII CATG 4 cut(s) 146, 215, 221, 230
NmuCI GTSAC 1 cut(s) 136
PagI TCATGA 2 cut(s) 217, 226
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 245
RseI CAYNNNNRTG 2 cut(s) 28, 216
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 6 cut(s) 75, 130, 214, 223, 286, 311
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 57
SetI ASST 4 cut(s) 32, 114, 247, 297
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 28, 216
Sse9I AATT 4 cut(s) 126, 235, 271, 301
SspI AATATT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 297
TasI AATT 4 cut(s) 126, 235, 271, 301
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 159, 294
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.