Prupe.5G230700_v2.0.a1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001619
Physical Location & Seq
Forward (+)
17611627 .. 17614269
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G230700.1

Sequence Viewer

Length: 675 bp
ATGAGGAAGCCTTGCTGTGAGAAGACAGAGATAACTAAAGGAGCATGGTCTAAGCAAGAAGATCAGAAACTCATTGATTACATCCAGAAACATGGGGAAGGTTGTTGGAATTCCCTTCCTAAGGCTGCTGGCTTGCGACGCTGCGGTAAAAGTTGTCGACTGAGATGGATAAACTATCTGAGACCAGATCTTAAACGCGGAAGCTTTGGAGAAGATGAAGAGGACCTCATCATCAGGCTTCATGCACTCCTCGGGAACCGGTGGTCATTGATAGCAGGAAGACTGCCAGGAAGGACAGACAACGAGGTGAAGAATTACTGGAACTCCCATATAAGGAAAAAGCTAGTAAAGATGGGTACCACTACTACTACTACTAGTACGGCTCTTGATCAGAAAAAACCCCCTCACCACGACAATAAGGTACCACTACTATTGCAGCCTGATGCTAGAAATCCAATATTATTTAGGCCACCTGCGAGGACGACGGATCAGAAGCGTGCGCCTAATCATAATGATGAGGTGGACGTCTCGGATTCCATGAGTATTAACGGTGGTAATCAACTTCAAACAGGTGTTATAATGAGCAACAAAAGCTGCTGTTTGCCTGACTTAAATCTTGACCTCACTCTAAGTCTCCAGTTGGCTGTGGGAGAGAGGCAGCAATCTGATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.36

Weight (kDa)

9.28

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AarI CACCTGC 1 cut(s) 481
AatII GACGTC 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 481
Acc65I GGTACC 2 cut(s) 356, 421
AccB1I GGYRCC 2 cut(s) 356, 421
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 144, 198
AclWI GGATC 1 cut(s) 495
AcsI RAATTY 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 358, 379, 423
AfiI CCNNNNNNNGG 2 cut(s) 121, 333
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 566
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 3 cut(s) 204, 343, 594
AluI AGCT 3 cut(s) 204, 343, 594
Alw26I GTCTC 3 cut(s) 175, 532, 638
AlwI GGATC 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 5 cut(s) 125, 141, 436, 594, 658
ApoI RAATTY 1 cut(s) 109
AsiGI ACCGGT 1 cut(s) 258
Asp718I GGTACC 2 cut(s) 356, 421
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 319, 398
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 2 cut(s) 356, 421
BbsI GAAGAC 2 cut(s) 29, 286
BbvI GCAGC 5 cut(s) 112, 128, 448, 581, 670
BccI CCATC 2 cut(s) 159, 346
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 3 cut(s) 175, 532, 638
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 344, 375, 447
BfuAI ACCTGC 1 cut(s) 481
BglII AGATCT 1 cut(s) 187
BisI GCNGC 5 cut(s) 126, 142, 437, 595, 659
BlsI GCNGC 5 cut(s) 127, 143, 438, 596, 660
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 3 cut(s) 257, 358, 423
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 29, 286
BpmI CTGGAG 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 333
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 323, 637
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 121, 333
BseMII CTCAG 2 cut(s) 152, 170
BseNI ACTGG 2 cut(s) 323, 637
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 5 cut(s) 112, 128, 448, 581, 670
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 2 cut(s) 356, 421
BshTI ACCGGT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 121, 333
BsmAI GTCTC 3 cut(s) 175, 532, 638
BsmBI CGTCTC 1 cut(s) 532
BsnI GGCC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 4 cut(s) 61, 187, 388, 487
BspACI CCGC 2 cut(s) 144, 198
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 153, 171
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 3 cut(s) 257, 358, 423
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 495
BspT107I GGYRCC 2 cut(s) 356, 421
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 323, 637
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 61, 187, 388, 487
BssNI GRCGYC 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 130, 134, 498
BstDEI CTNAG 5 cut(s) 51, 120, 161, 179, 629
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 4 cut(s) 64, 190, 391, 490
BstMAI GTCTC 3 cut(s) 175, 532, 638
BstMBI GATC 4 cut(s) 61, 187, 388, 487
BstMWI GCNNNNNNNGC 2 cut(s) 138, 591
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 5 cut(s) 112, 128, 448, 581, 670
BstV2I GAAGAC 2 cut(s) 29, 286
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 3 cut(s) 130, 134, 498
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 147
Csp6I GTAC 3 cut(s) 357, 378, 422
CspAI ACCGGT 1 cut(s) 258
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 4 cut(s) 45, 92, 242, 538
CviQI GTAC 3 cut(s) 357, 378, 422
DdeI CTNAG 5 cut(s) 51, 120, 161, 179, 629
DpnI GATC 4 cut(s) 63, 189, 390, 489
DpnII GATC 4 cut(s) 61, 187, 388, 487
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 175
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 4 cut(s) 48, 95, 245, 541
FaiI YATR 8 cut(s) 46, 93, 243, 330, 332, 510, 539, 578
FatI CATG 4 cut(s) 44, 91, 241, 537
FbaI TGATCA 1 cut(s) 388
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 5 cut(s) 126, 142, 437, 595, 659
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 5 cut(s) 126, 142, 437, 595, 659
FspBI CTAG 3 cut(s) 344, 375, 447
GlaI GCGC 1 cut(s) 501
GluI GCNGC 5 cut(s) 126, 142, 437, 595, 659
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 259
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 4 cut(s) 48, 95, 245, 541
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 1 cut(s) 533
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 319, 398
Hpy166II GTNNAC 2 cut(s) 158, 523
Hpy188I TCNGA 7 cut(s) 66, 180, 393, 492, 532, 667, 674
Hpy188III TCNNGA 4 cut(s) 85, 253, 386, 617
Hpy8I GTNNAC 2 cut(s) 158, 523
Hpy99I CGWCG 2 cut(s) 141, 487
HpyAV CCTTC 3 cut(s) 92, 125, 285
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 2 cut(s) 245, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 591
HpyF3I CTNAG 5 cut(s) 51, 120, 161, 179, 629
HpySE526I ACGT 1 cut(s) 525
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 4 cut(s) 48, 95, 245, 541
HspAI GCGC 1 cut(s) 500
KpnI GGTACC 2 cut(s) 360, 425
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 4 cut(s) 61, 187, 388, 487
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 5 cut(s) 112, 128, 448, 581, 670
LweI GCATC 1 cut(s) 433
MaeI CTAG 3 cut(s) 344, 375, 447
MaeII ACGT 1 cut(s) 525
MalI GATC 4 cut(s) 63, 189, 390, 489
MboI GATC 4 cut(s) 61, 187, 388, 487
MboII GAAGA 6 cut(s) 34, 71, 224, 230, 291, 322
MflI RGATCY 1 cut(s) 187
MluCI AATT 2 cut(s) 109, 313
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 9 cut(s) 214, 236, 260, 298, 414, 471, 511, 632, 648
MseI TTAA 3 cut(s) 192, 546, 611
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 138, 591
NdeII GATC 4 cut(s) 61, 187, 388, 487
NlaIII CATG 4 cut(s) 48, 95, 245, 541
NlaIV GGNNCC 3 cut(s) 257, 358, 423
PaqCI CACCTGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 533
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 5 cut(s) 127, 143, 438, 596, 660
PpuMI RGGWCCY 1 cut(s) 223
PsiI TTATAA 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 257, 358, 423
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 358, 379, 423
RsaNI GTAC 3 cut(s) 357, 378, 422
RseI CAYNNNNRTG 1 cut(s) 513
SalI GTCGAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 192, 546, 611
SatI GCNGC 5 cut(s) 126, 142, 437, 595, 659
Sau3AI GATC 4 cut(s) 61, 187, 388, 487
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 513
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 2 cut(s) 109, 313
SsiI CCGC 2 cut(s) 144, 198
SspI AATATT 1 cut(s) 459
SspMI CTAG 3 cut(s) 344, 375, 447
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 109, 313
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 3 cut(s) 192, 546, 611
Tru9I TTAA 3 cut(s) 192, 546, 611
TseI GCWGC 5 cut(s) 125, 141, 436, 594, 658
TspDTI ATGAA 2 cut(s) 230, 231
TspGWI ACGGA 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 3 cut(s) 344, 375, 447
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.