Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

65670763 .. 65671234

Gene Structure 472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGGAAACCCTGCTGCGACAAGCAAGACACGAACAAAGGAGCTTGGTCGAAACAAGAAGATCAGAAGCTCATCGATTACATTCGCAAACATGGTGAGGGTTGTTGGCGTACCCTCCCTCAAGCCGCAGGCCTGCTTCGATGCGGTAAAAGTTGCAGACTTCGGTGGATAAACTATCTACGGCCAGACCTTAAAAGGGGCAAGTTTGCTGAAGATGAAGAAGACCTCATCATTAAACTTCATGCACTCCTAGGCAATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

87

Amino Acids

10.2

Weight (kDa)

9.4

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	1.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	6.7e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	126, 144
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	44, 70
AluI	AGCT	2 cut(s)	44, 70
AoxI	GGCC	2 cut(s)	130, 182
ApeKI	GCWGC	1 cut(s)	15
AspA2I	CCTAGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	107
AvrII	CCTAGG	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	16, 126
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	2 cut(s)	17, 127
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	2
BshFI	GGCC	2 cut(s)	132, 184
BshVI	ATCGAT	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	196
BsnI	GGCC	2 cut(s)	132, 184
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	126, 144
BspANI	GGCC	2 cut(s)	132, 184
BspDI	ATCGAT	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	130, 134
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	2
BstV2I	GAAGAC	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	132, 184
BsuTUI	ATCGAT	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	130, 134
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	92, 242
CviJI	RGCY	5 cut(s)	44, 70, 125, 132, 184
CviKI_1	RGCY	5 cut(s)	44, 70, 125, 132, 184
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	95, 245
FaiI	YATR	2 cut(s)	93, 243
FatI	CATG	2 cut(s)	91, 241
Fnu4HI	GCNGC	2 cut(s)	16, 126
Fsp4HI	GCNGC	2 cut(s)	16, 126
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	16, 126
HaeIII	GGCC	2 cut(s)	132, 184
Hin1II	CATG	2 cut(s)	95, 245
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	156, 245
Hsp92II	CATG	2 cut(s)	95, 245
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	25, 114, 146, 198
Lsp1109I	GCAGC	1 cut(s)	2
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	251
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	71, 224, 230, 233
MnlI	CCTC	4 cut(s)	91, 125, 129, 236
MseI	TTAA	2 cut(s)	192, 234
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	95, 245
PceI	AGGCCT	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	17, 127
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	192, 234
SatI	GCNGC	2 cut(s)	16, 126
Sau3AI	GATC	1 cut(s)	61
SetI	ASST	4 cut(s)	46, 72, 192, 228
SfaNI	GCATC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	2 cut(s)	126, 144
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	250
TaqI	TCGA	3 cut(s)	50, 75, 139
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	192, 234
Tru9I	TTAA	2 cut(s)	192, 234
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	230, 231
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.