Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

23241654 .. 23242995

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGGAAGCCTTGTTATGAGAAGATAAACAAAGGAGCATGGTCTAAGCAAGAAGATCAGAAACTCATTGACTACATCCAGAAACATGGCGAAGGTTGTTGGAATTCTCTTCCTAAGGCTGCAGGGTTGAGTCGGTGTGGTAAAAGTTGTCGACTGAGGTGGATAAACTATCTAAGGCCAGATCTTAAACGCGAAAGTATTCGAGAAGATGAAGAGGACCTCATCATCAGGCTTCATGCGCTCCTTGGGAATAGGTGGTCACTGATAGCCGGAAGACTGCCGGGAAGGACGGACAATGAGGTGAAGAATTACTGGAACACTCATATAAGGAAAAAGTTATTAAAGATGGGAAGAACTCTTGATCGACCAAAAAACCCCATCACCACAATGATCCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

134

Amino Acids

15.67

Weight (kDa)

9.93

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	103
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	313, 373
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	340, 386
BcnI	CCSGG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	270, 281
BsnI	GGCC	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	55, 181, 361, 390
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	55, 181, 361, 390
BssT1I	CCWWGG	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	114, 207
BstDEI	CTNAG	4 cut(s)	45, 114, 155, 173
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	4 cut(s)	58, 184, 364, 393
BstMBI	GATC	4 cut(s)	55, 181, 361, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	3 cut(s)	39, 86, 236
CviJI	RGCY	5 cut(s)	10, 119, 178, 232, 269
CviKI_1	RGCY	5 cut(s)	10, 119, 178, 232, 269
DdeI	CTNAG	4 cut(s)	45, 114, 155, 173
DpnI	GATC	4 cut(s)	57, 183, 363, 392
DpnII	GATC	4 cut(s)	55, 181, 361, 390
Eam1104I	CTCTTC	2 cut(s)	114, 207
EarI	CTCTTC	2 cut(s)	114, 207
Eco130I	CCWWGG	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	3 cut(s)	42, 89, 239
FaiI	YATR	6 cut(s)	18, 40, 87, 237, 324, 326
FatI	CATG	3 cut(s)	38, 85, 235
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	270, 281
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	42, 89, 239
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	270, 281
HphI	GGTGA	2 cut(s)	313, 373
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	79, 203, 359
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	86, 279
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	4 cut(s)	45, 114, 155, 173
Hsp92II	CATG	3 cut(s)	42, 89, 239
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	4 cut(s)	55, 181, 361, 390
LmnI	GCTCC	2 cut(s)	35, 246
LpnPI	CCDG	7 cut(s)	92, 108, 192, 214, 283, 294, 298
Lsp1109I	GCAGC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	4 cut(s)	57, 183, 363, 392
MboI	GATC	4 cut(s)	55, 181, 361, 390
MboII	GAAGA	8 cut(s)	34, 65, 101, 218, 224, 285, 316, 363
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	2 cut(s)	103, 307
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	150, 208, 230, 292
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	2 cut(s)	186, 341
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	2 cut(s)	270, 281
MspR9I	CCNGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	55, 181, 361, 390
NlaIII	CATG	3 cut(s)	42, 89, 239
NmuCI	GTSAC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	386
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	186, 341
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	55, 181, 361, 390
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	5 cut(s)	97, 161, 222, 257, 303
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	103, 307
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	3 cut(s)	151, 202, 364
TasI	AATT	2 cut(s)	103, 307
Tru1I	TTAA	2 cut(s)	186, 341
Tru9I	TTAA	2 cut(s)	186, 341
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	224, 225
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.