Rh4CG411400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001619
Physical Location & Seq
Forward (+)
65671399 .. 65671959
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG411400.1

Sequence Viewer

Length: 561 bp
ATGATTGGTTGCAAAATGATTCAATTTAGGTGGTCGCTTATTGCTGGAAGATTGCCGGGACGTACAGACAATGAAGTGAAGAACTATTGGAACTCGCATTTGAGAAGAAAGCTTATGAACATGGGTATAGATCCAAACAACCATCGACCAACCAACACTCTCCTCCCTCGGCCTCATAATCATCATCAAAGCCCACCACAAACACTAAAATCACCAGCTGGTTCTGGTATCAATAATTTTAATCATGAGCCAGTAGTGATAGAGTCCAAAAGTTTGCGTGGTGATGATCAAAATTGCGAGCAAGTATCGGATGGCAGAAGTTGCTTGGAGGATGATTCTTCTTGTGGCGGTCATCACCTGCCTGATTTAAACCTTGATCTCACTGTCCATCTCAGTGCTCCTAATTTCTCTTCACCTAATGATGATCATCAATATCTCATTAAGGAGCTTAATGAGCCAATTCATCGTCCTCATCTCAACATTAGTGACCCCCCTGAAATGTCGATTGGGACCAAGTCAGCAATATTTGCCTCATCTACCACGCTTCCTCTCTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

6.62

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 34 6.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 366
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 538
AfaI GTAC 1 cut(s) 64
AgsI TTSAA 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 3 cut(s) 112, 218, 448
AluI AGCT 3 cut(s) 112, 218, 448
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 510
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 204, 293, 347, 405
AvaII GGWCC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 400
BccI CCATC 3 cut(s) 150, 305, 396
BclI TGATCA 2 cut(s) 286, 424
BcnI CCSGG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 316, 337
BseJI GATNNNNATC 1 cut(s) 426
BseMII CTCAG 1 cut(s) 406
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 72, 523
BsmFI GGGAC 2 cut(s) 72, 523
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 4 cut(s) 130, 286, 376, 424
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 130, 286, 376, 424
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 415, 557
BstAPI GCANNNNNTGC 2 cut(s) 321, 527
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 2 cut(s) 316, 337
BstKTI GATC 4 cut(s) 133, 289, 379, 427
BstMBI GATC 4 cut(s) 130, 286, 376, 424
BstMWI GCNNNNNNNGC 3 cut(s) 321, 454, 527
BstSCI CCNGG 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 316, 337
BtsIMutI CAGTG 2 cut(s) 381, 400
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 11, 46
CviAII CATG 2 cut(s) 121, 245
CviJI RGCY 7 cut(s) 112, 172, 192, 218, 250, 448, 457
CviKI_1 RGCY 7 cut(s) 112, 172, 192, 218, 250, 448, 457
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 392
DpnI GATC 4 cut(s) 132, 288, 378, 426
DpnII GATC 4 cut(s) 130, 286, 376, 424
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 415, 557
EarI CTCTTC 2 cut(s) 415, 557
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 538
FaeI CATG 2 cut(s) 124, 248
FaiI YATR 5 cut(s) 116, 122, 128, 177, 246
FaqI GGGAC 2 cut(s) 72, 523
FatI CATG 2 cut(s) 120, 244
FbaI TGATCA 2 cut(s) 286, 424
FokI GGATG 2 cut(s) 323, 344
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 124, 248
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 19, 263, 335
HpaII CCGG 1 cut(s) 56
HphI GGTGA 4 cut(s) 204, 293, 347, 405
Hpy188I TCNGA 2 cut(s) 310, 557
Hpy188III TCNNGA 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 454, 527
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 124, 248
Ksp22I TGATCA 2 cut(s) 286, 424
Kzo9I GATC 4 cut(s) 130, 286, 376, 424
LmnI GCTCC 2 cut(s) 403, 445
LpnPI CCDG 9 cut(s) 30, 69, 204, 210, 228, 264, 371, 375, 507
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 485
MalI GATC 4 cut(s) 132, 288, 378, 426
MboI GATC 4 cut(s) 130, 286, 376, 424
MboII GAAGA 6 cut(s) 60, 91, 117, 330, 402, 544
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 5 cut(s) 23, 235, 292, 403, 459
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 7 cut(s) 173, 177, 183, 322, 480, 541, 558
MseI TTAA 4 cut(s) 240, 368, 441, 450
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 321, 454, 527
NciI CCSGG 1 cut(s) 57
NdeII GATC 4 cut(s) 130, 286, 376, 424
NlaIII CATG 2 cut(s) 124, 248
NlaIV GGNNCC 1 cut(s) 511
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 485
PagI TCATGA 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 19, 335
PflFI GACNNNGTC 1 cut(s) 514
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 510
PsuI RGATCY 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 4 cut(s) 240, 368, 441, 450
Sau3AI GATC 4 cut(s) 130, 286, 376, 424
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 32, 64, 114, 220, 360, 375, 418, 450
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 5 cut(s) 23, 235, 292, 403, 459
SsiI CCGC 1 cut(s) 348
SspI AATATT 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 145, 503
TasI AATT 5 cut(s) 23, 235, 292, 403, 459
TfiI GAWTC 2 cut(s) 19, 335
Tru1I TTAA 4 cut(s) 240, 368, 441, 450
Tru9I TTAA 4 cut(s) 240, 368, 441, 450
TscAI CASTG 2 cut(s) 388, 400
TseFI GTSAC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 87, 131, 452
TspRI CASTG 2 cut(s) 388, 400
Tth111I GACNNNGTC 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.