Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001619

Physical Location & Seq

Genomic Coordinates Forward (+)

60572062 .. 60574260

Gene Structure 2199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG389100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAACATGGGTATAGATCCAAACAACCATCGACCAACCAACACTCTCCTCCCTCGGCCTCATAATCATCATCAAAGCCCACCACAAACACTAAAATCACCAGCTGGTTCTGGTATCAATAATTTTAATCATGAGCCAGTAGTGATAGAGTCCAAAAGTTCGCGTGGTGATGATCAAAATTGCGAGCAAGTATCGGATGGCAGAAGTTGCTTGGAGGATGACTCTTCTTGTGGCGGTCATCACCTGCCTGACTTAAACCTTGATCTCACTGTCCATCTCAGTGCTCCTAATTTCTCTTCACCTAATGATGATCATCAATATCTCATTAAGGAGCTTAATGAGCCAATTCATCGTCCTCATCTCAACATTAGTGACCCCCCTGAAATGTTGATTGGGACCAAGTCAGCAATATTTGCCTCATCTACCACGCTTCCTCTCTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

148

Amino Acids

16.32

Weight (kDa)

5.67

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32290 FvH4_5g17111 FvH4_5g17120
malus_domestica	MD06G1064300.v1.1 MD06G1229600.v1.1 MD06G1229700.v1.1 MD13G1026400.v1.1 MD14G1234500.v1.1 MD14G1234600.v1.1 MD16G1029400.v1.1
prunus_persica	Prupe.1G323400_v2.0.a1 Prupe.5G230700_v2.0.a1 Prupe.5G230800_v2.0.a1
pyrus_communis	pycom06g20060 pycom06g20070 pycom13g02490 pycom14g19530 pycom14g19550 pycom16g02530
rosa_chinensis	RchiOBHm_Chr4g0441081 RchiOBHm_Chr7g0178681 RchiOBHm_Chr7g0178691
rosa_laevigata	RLG00000005422 RLG00000005423 RLG00000006118
rosa_multiflora	Rmu_sc0002320.1_g000016 Rmu_sc0002320.1_g000018 Rmu_sc0006317.1_g000008
rosa_roxburghii	Rroxscaffold_3G00274670 Rroxscaffold_3G00274680 Rroxscaffold_5G00382010
rosa_rugosa	Rorug04G0331000 Rorug06G0418700
rosa_samantha	Rh4AG382500 Rh4BG396100 Rh4BG396200 Rh4CG411200 Rh4CG411300 Rh4CG411400 Rh4DG389100 Rh7AG017900 Rh7AG018000 Rh7BG017400 Rh7BG017500 Rh7CG018000 Rh7CG018100
rosa_wichuraiana	Rw4G033010 Rw7G001440 Rw7G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	2 cut(s)	104, 334
AluI	AGCT	2 cut(s)	104, 334
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	90, 179, 233, 291
AvaII	GGWCC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	286
BccI	CCATC	3 cut(s)	36, 191, 282
BclI	TGATCA	2 cut(s)	172, 310
BfuAI	ACCTGC	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	397
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	202, 223
BseJI	GATNNNNATC	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	16, 172, 262, 310
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	16, 172, 262, 310
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	3 cut(s)	229, 301, 443
BstAPI	GCANNNNNTGC	2 cut(s)	207, 413
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	202, 223
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	4 cut(s)	19, 175, 265, 313
BstMBI	GATC	4 cut(s)	16, 172, 262, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 340, 413
BstUI	CGCG	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	202, 223
BtsIMutI	CAGTG	2 cut(s)	267, 286
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	396
CviAII	CATG	2 cut(s)	7, 131
CviJI	RGCY	6 cut(s)	58, 78, 104, 136, 334, 343
CviKI_1	RGCY	6 cut(s)	58, 78, 104, 136, 334, 343
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	4 cut(s)	18, 174, 264, 312
DpnII	GATC	4 cut(s)	16, 172, 262, 310
Eam1104I	CTCTTC	3 cut(s)	229, 301, 443
EarI	CTCTTC	3 cut(s)	229, 301, 443
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	424
FaeI	CATG	2 cut(s)	10, 134
FaiI	YATR	4 cut(s)	8, 14, 63, 132
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	6, 130
FbaI	TGATCA	2 cut(s)	172, 310
FokI	GGATG	2 cut(s)	209, 230
HaeIII	GGCC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	10, 134
HinfI	GANTC	2 cut(s)	149, 221
HphI	GGTGA	4 cut(s)	90, 179, 233, 291
Hpy188I	TCNGA	2 cut(s)	196, 443
Hpy188III	TCNNGA	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 340, 413
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	10, 134
Ksp22I	TGATCA	2 cut(s)	172, 310
Kzo9I	GATC	4 cut(s)	16, 172, 262, 310
LmnI	GCTCC	2 cut(s)	289, 331
LpnPI	CCDG	7 cut(s)	90, 96, 114, 150, 257, 261, 393
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	18, 174, 264, 312
MboI	GATC	4 cut(s)	16, 172, 262, 310
MboII	GAAGA	3 cut(s)	216, 288, 430
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	4 cut(s)	121, 178, 289, 345
MlyI	GAGTC	2 cut(s)	158, 215
MnlI	CCTC	7 cut(s)	59, 63, 69, 208, 366, 427, 444
MseI	TTAA	4 cut(s)	126, 254, 327, 336
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	207, 340, 413
NdeII	GATC	4 cut(s)	16, 172, 262, 310
NlaIII	CATG	2 cut(s)	10, 134
NlaIV	GGNNCC	1 cut(s)	397
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	371
PagI	TCATGA	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	400
PleI	GAGTC	2 cut(s)	157, 215
PpsI	GAGTC	2 cut(s)	157, 215
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	126, 254, 327, 336
Sau3AI	GATC	4 cut(s)	16, 172, 262, 310
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	2 cut(s)	158, 215
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	5 cut(s)	106, 246, 261, 304, 336
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	4 cut(s)	121, 178, 289, 345
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	121, 178, 289, 345
Tru1I	TTAA	4 cut(s)	126, 254, 327, 336
Tru9I	TTAA	4 cut(s)	126, 254, 327, 336
TscAI	CASTG	2 cut(s)	274, 286
TseFI	GTSAC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	17, 338
TspRI	CASTG	2 cut(s)	274, 286
Tth111I	GACNNNGTC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.