Rh7AG018000
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001619
Physical Location & Seq
Reverse (-)
1202563 .. 1205060
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG018000.1

Sequence Viewer

Length: 549 bp
ATGAGGAAGCCTTGCTGTGATAAGACTGAGATGACTAAAGGAGCGTGGTCGATACAAGAAGACCAGAAACTCATTGACTACATCCAAAAACATGGCGAAGGTTGCTGGAATTCTCTTCCTAAGGCTGCAGGGTTGCGTCGTTGCGGTAAGAGTTGTCGACTGAGATGGATAAACTATCTACGACCAGATCTTAAACGAGGAAGCTTTGGAGAAGATGAAGAGGATCTCATCATCAGGCTTCATACACTCCTTGGGAATAGGTGGTCGCTAATAGCTGGAAGACTGCCTGGAAGGACAGATAACGAGGTGAAGAATTACTGGAACTCTCATTTAAAGAAAAAGCTACTGAACATAGGCACCACTACTCTTCGTCCAAATAAGCCCCGCGAGATTAACCATGCACCTTATAATAAGCTTGTCAAGTACTTCAATGACATGGACGATGAGGTAGTTGATGAGGTCTCCGCCGATTCCGGGAGCACCGGAATCAGCAGCTGCTTGGTGCCTAAGTTGAATCTCGACCTTAGTCTCAGCCTAGCTCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

182

Amino Acids

20.77

Weight (kDa)

8.87

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 4.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 356, 502
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 387
AciI CCGC 3 cut(s) 144, 385, 465
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 2 cut(s) 430, 514
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 6 cut(s) 204, 275, 343, 415, 495, 539
AluI AGCT 6 cut(s) 204, 275, 343, 415, 495, 539
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 466, 533
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 125, 492, 495
ApoI RAATTY 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 2 cut(s) 356, 502
BbsI GAAGAC 2 cut(s) 66, 286
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 112, 482, 504
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 466, 533
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 126, 493, 496
BlsI GCNGC 3 cut(s) 127, 494, 497
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 288, 475
BmiI GGNNCC 2 cut(s) 358, 504
BmrFI CCNGG 2 cut(s) 288, 475
BoxI GACNNNNGTC 1 cut(s) 525
BpiI GAAGAC 2 cut(s) 66, 286
BpuMI CCSGG 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 323
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 18, 152, 544
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 112, 482, 504
Bsh1236I CGCG 1 cut(s) 387
BshNI GGYRCC 2 cut(s) 356, 502
BsiHKAI GWGCWC 1 cut(s) 482
BsiSI CCGG 2 cut(s) 474, 483
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 466, 533
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 187, 223
BspACI CCGC 3 cut(s) 144, 385, 465
BspCNI CTCAG 3 cut(s) 19, 153, 543
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 358, 504
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 356, 502
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 187, 223
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 3 cut(s) 120, 213, 372
BstDEI CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 2 cut(s) 190, 226
BstMAI GTCTC 2 cut(s) 466, 533
BstMBI GATC 2 cut(s) 187, 223
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 288
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 286, 473
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 112, 482, 504
BstV2I GAAGAC 2 cut(s) 66, 286
BstX2I RGATCY 2 cut(s) 187, 223
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 187, 223
Bsu36I CCTNAGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 495
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 424
CviAII CATG 3 cut(s) 92, 398, 436
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
DpnI GATC 2 cut(s) 189, 225
DpnII GATC 2 cut(s) 187, 223
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 120, 213, 372
EarI CTCTTC 3 cut(s) 120, 213, 372
EciI GGCGGA 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 95, 401, 439
FaiI YATR 6 cut(s) 93, 243, 353, 399, 408, 437
FatI CATG 3 cut(s) 91, 397, 435
FauI CCCGC 1 cut(s) 392
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 126, 493, 496
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 126, 493, 496
FspBI CTAG 1 cut(s) 536
GluI GCNGC 3 cut(s) 126, 493, 496
HapII CCGG 2 cut(s) 474, 483
HgaI GACGC 1 cut(s) 125
Hin1II CATG 3 cut(s) 95, 401, 439
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 2 cut(s) 202, 413
HinfI GANTC 3 cut(s) 470, 486, 514
HpaII CCGG 2 cut(s) 474, 483
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 518, 542
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 92, 285
HpyCH4V TGCA 2 cut(s) 128, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 6 cut(s) 27, 120, 161, 507, 524, 530
Hsp92II CATG 3 cut(s) 95, 401, 439
Kzo9I GATC 2 cut(s) 187, 223
LmnI GCTCC 2 cut(s) 41, 477
Lsp1109I GCAGC 3 cut(s) 112, 482, 504
MaeI CTAG 1 cut(s) 536
MalI GATC 2 cut(s) 189, 225
MboI GATC 2 cut(s) 187, 223
MboII GAAGA 7 cut(s) 71, 107, 224, 230, 291, 322, 359
MflI RGATCY 2 cut(s) 187, 223
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 2 cut(s) 109, 313
MnlI CCTC 5 cut(s) 191, 214, 298, 439, 451
MseI TTAA 3 cut(s) 192, 332, 393
MspA1I CMGCKG 1 cut(s) 495
MspI CCGG 2 cut(s) 474, 483
MspR9I CCNGG 2 cut(s) 288, 475
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 475
NdeII GATC 2 cut(s) 187, 223
NlaIII CATG 3 cut(s) 95, 401, 439
NlaIV GGNNCC 2 cut(s) 358, 504
PfeI GAWTC 3 cut(s) 470, 486, 514
PfoI TCCNGGA 1 cut(s) 473
PkrI GCNGC 3 cut(s) 127, 494, 497
PshAI GACNNNNGTC 1 cut(s) 525
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 358, 504
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 2 cut(s) 187, 223
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 192, 332, 393
SatI GCNGC 3 cut(s) 126, 493, 496
Sau3AI GATC 2 cut(s) 187, 223
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 288, 475
SduI GDGCHC 1 cut(s) 482
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 2 cut(s) 109, 313
SsiI CCGC 3 cut(s) 144, 385, 465
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 286, 473
StyI CCWWGG 1 cut(s) 250
TaqI TCGA 3 cut(s) 50, 157, 519
TasI AATT 2 cut(s) 109, 313
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 3 cut(s) 470, 486, 514
Tru1I TTAA 3 cut(s) 192, 332, 393
Tru9I TTAA 3 cut(s) 192, 332, 393
TseI GCWGC 3 cut(s) 125, 492, 495
TspDTI ATGAA 2 cut(s) 230, 231
XapI RAATTY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.