Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013291

Physical Location & Seq

Genomic Coordinates Reverse (-)

66272898 .. 66276676

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGATCACCACTTTCTCGTCTTCAGTCTATAAAAGCTGCGAGGTTTCAAATCCCCCACAAAATCTCATTTCCCCCAAAATCCCCAAAATGCCCCTACTCGCCGAGGCCTACGCCTGCGTGCCGTCGACGGAGCGCGGCCGGGGGATCCTGATCTCCGGCGACCCCAAATCCAACAGGCTCCTCTACACCAATGGCAGATCCGTGATCATCATGAACCTCGACAACCCTCTCGACGTCGCCGTCTACGCCGAGCACGCCTACCCCGCCACCGTCGCCAGATTCTCCCCCAACGGCGAGTGGATCGCGTCCGCCGACGTCTCCGGCACCGTCAGGATCTGGGGGACCCACAACGATTTCGTCCTCAAGAACGAGTTCAAGGTCCTCTCGGGTCGGATCGACGACCTCCACTGGTCCGCCGACGGAATGCGGATCGTCGCCTGCGGCGAAGGCAAAGGGAAGTCGCTTGTCCGCGCCTTCATGTGGGATTCTGGGTCCACTGTGGGGGATTTCGATGGGCATTCGAAACGGGTTTTGAGCTGTTGTTTCAAGCCAACCAGACCCTTTCGCATTGTGACATGCGGTGAGGATTTCCTGGTCAATTTCTATGAAGGGCCTCCTTTCAAATTCAAGCAGTCTCACAGGGATCACTCGAATTTTGTGAACTGTGTAAGGTACTCTCCAGATGGGAGTAAGTTTATCACTGTAAGCTCAGATAAGAAGGGTCTTATTTTTGATGGGAAGACTGCGGAGAAGATCGGAGAGCTTTCATCGGAAGATGGCCACAAAGGCAGCATTTATGCTCTTAGCTGGAGTCCTGATGGCAAACAGATTCTGACTGTGTCCGCTGACAAGTCGGCGAAAGTATGGGATATATGTGAGGATGGTAATGGGAAGATGAATAAAACATTGACATGTCCTGGATCAGGTGGAGTGGATGACATGCTTGTTGGCGGCCTATGGCAGAATGATCATATAGTGACTGTTTCACTTGGAGGCATGATTAGTATATTCTCAGCAAGTGACCTTGATAAAGCCCCAATATCGCTATTTGGACACATGAAGAATATTACTTCATTGGCTGTTCTAAAGAATGACCCAAAACTTATATTGTCTACCAGCTATGATGGTCTAATTGTTAAGTGGGTTCAAGGCGTTGGATATAGTGGAAAATTACAAAGGAAGGAGACTTCTCAAATCAAATGTTTTGCAGCTGTTGAAGAAGAAATTGTTTCATCTGGATTTGACAACACGGTGTGGAGAGTTCCATTACAGGGTGATCAATGTGGAGATGCAGAATCTGTTGATGTTGGTAGTCAGCCGAAGGTCATAAGCCATGCCCTTCAGTCTCCTGAACTTGTTTTGGTTTCAATTGATTCAGGAGCTGTCTTGCTTCGTGGCAGCAAAGTAGTGTCAACTATTAACCTTGGGTTTACTGTCACAGCATCTGCTATTGCACCAGATGGTAGTGAAGCTATCATTGGTGGGCAGGATGGCAAACTGCATATATATTCTATAGCAGGTGATACACTGACGGAAGAGGCTGTACTAGAGAAACATCGGGGTGCTATCAGTGTCATACATTACTCTCCAGATGTTTCAATGATTGCATCAGGAGATTTGAACCGAGAAGCTGTCATCTGGGATCGTGCCTCCCGAGAGGTCAAGCTTAAGAACATGTTGTACCATACTGCTCGAATAAACTGCCTTGCTTGGTCTCCTGATAACAGCATGGTTGCTACTGGATCACTTGACACATGTGTCATTATATATGAAGTTGACAAGCCTGCATCCAGCCGTGTAACCATCAAGGGTGCTCATTTGGGCGGGGTGTATGGGATAGCTTTCACCGATGAGCACACAATCGTAAGTTCTGGCGAGGATGCCTTTGTTCGTGTGTGGAGGTTGACTCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

638

Amino Acids

69.04

Weight (kDa)

6.08

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	59 - 230	2.4e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	66 - 238	1.1e-11	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	82 - 290	1.5e-14	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	84 - 301	3.8e-29	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	94 - 382	3.3e-11	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	131 - 203	9.1e-06	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	131 - 294	9.5e-11	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	134 - 291	4.2e-09	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	136 - 381	1e-08	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	144 - 292	5.2e-07	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	158 - 293	1.3e-14	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	176 - 291	5.1e-08	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	177 - 420	7.4e-13	WDR55
Beta-prop_WDR3_1st	PF25173	212 - 292	1.5e-09	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	216 - 293	2.4e-06	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	216 - 293	2e-08	EIF3I
Beta-prop_THOC3	PF25174	216 - 303	1.2e-12	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	249 - 407	2.1e-08	TEP-1 second beta-propeller
WD40	PF00400	259 - 290	1.7e-08	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_1st	PF25171	326 - 633	3.3e-09	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	354 - 548	7.6e-08	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	401 - 554	5.8e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	465 - 593	5.3e-08	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	466 - 555	1.7e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	469 - 560	2.6e-09	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	477 - 636	9e-07	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	478 - 575	2.4e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	479 - 634	4.5e-21	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	483 - 633	1e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR19_1st	PF23389	491 - 633	2.6e-06	WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	494 - 634	5.1e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	496 - 594	9.9e-06	IFT140 first beta-propeller
WD40_CDC20-Fz	PF24807	517 - 635	2.2e-13	CDC20/Fizzy WD40 domain
WDR55	PF24796	523 - 633	2.8e-07	WDR55
Beta-prop_EML_2	PF23414	555 - 629	3.7e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	558 - 635	9.3e-08	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	562 - 637	1.6e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	562 - 635	1.4e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	562 - 637	1.4e-10	WDR3 first beta-propeller domain
WD40	PF00400	562 - 590	1.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01330 AT3G18060
fragaria_vesca	FvH4_5g17110
malus_domestica	MD06G1229500.v1.1 MD14G1234400.v1.1
prunus_persica	Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1 Prupe.5G230600_v2.0.a1
pyrus_communis	pycom06g20050 pycom14g19520
rosa_chinensis	RchiOBHm_Chr7g0178701
rosa_laevigata	RLG00000005421
rosa_multiflora	Rmu_sc0002320.1_g000019
rosa_roxburghii	Rroxscaffold_3G00274660
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG018100 Rh7BG017600
rosa_wichuraiana	Rw7G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1508
AasI	GACNNNNNNGTC	2 cut(s)	239, 1757
AatII	GACGTC	2 cut(s)	237, 318
Acc36I	ACCTGC	1 cut(s)	1508
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	3 cut(s)	125, 243, 1112
AccII	CGCG	3 cut(s)	135, 305, 471
AcoI	YGGCCR	2 cut(s)	136, 778
AcsI	RAATTY	2 cut(s)	623, 652
AcuI	CTGAAG	2 cut(s)	6, 1325
AcyI	GRCGYC	2 cut(s)	234, 315
AdeI	CACNNNGTG	1 cut(s)	1254
AfaI	GTAC	3 cut(s)	674, 1545, 1682
AfiI	CCNNNNNNNGG	4 cut(s)	480, 501, 923, 1271
AflII	CTTAAG	1 cut(s)	1667
AflIII	ACRYGT	3 cut(s)	911, 1674, 1754
AjnI	CCWGG	2 cut(s)	591, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	1461, 1493
Alw21I	GWGCWC	3 cut(s)	255, 1816, 1857
Alw26I	GTCTC	5 cut(s)	322, 639, 1178, 1350, 1719
AlwNI	CAGNNNCTG	5 cut(s)	336, 832, 1298, 1382, 1445
Ama87I	CYCGRG	2 cut(s)	385, 1653
AoxI	GGCC	5 cut(s)	105, 136, 611, 778, 952
ApeKI	GCWGC	4 cut(s)	36, 789, 1208, 1398
ApoI	RAATTY	2 cut(s)	623, 652
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	135, 473
AspS9I	GGNCC	5 cut(s)	342, 379, 411, 492, 611
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	4 cut(s)	593, 1286, 1532, 1837
AsuII	TTCGAA	1 cut(s)	521
AvaI	CYCGRG	2 cut(s)	385, 1653
AvaII	GGWCC	4 cut(s)	342, 379, 411, 492
BalI	TGGCCA	1 cut(s)	780
BamHI	GGATCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	1527, 1559
BbsI	GAAGAC	2 cut(s)	12, 746
Bbv12I	GWGCWC	3 cut(s)	255, 1816, 1857
BbvI	GCAGC	4 cut(s)	23, 801, 1220, 1410
BceAI	ACGGC	4 cut(s)	106, 224, 307, 1779
BcgI	CGANNNNNNTGC	2 cut(s)	1683, 1717
BciT130I	CCWGG	2 cut(s)	593, 918
BclI	TGATCA	4 cut(s)	3, 204, 967, 1276
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	5 cut(s)	322, 639, 1178, 1350, 1719
BfaI	CTAG	1 cut(s)	1547
BfmI	CTRYAG	1 cut(s)	1512
BfrI	CTTAAG	1 cut(s)	1667
BfuAI	ACCTGC	1 cut(s)	1508
BglI	GCCNNNNNGGC	1 cut(s)	786
BisI	GCNGC	7 cut(s)	37, 136, 442, 790, 952, 1209, 1399
BlsI	GCNGC	7 cut(s)	38, 137, 443, 791, 953, 1210, 1400
Bme1390I	CCNGG	3 cut(s)	140, 593, 918
Bme18I	GGWCC	4 cut(s)	342, 379, 411, 492
BmeT110I	CYCGRG	2 cut(s)	385, 1653
BmgT120I	GGNCC	5 cut(s)	342, 379, 411, 492, 611
BmiI	GGNNCC	6 cut(s)	146, 179, 325, 343, 344, 493
BmrFI	CCNGG	3 cut(s)	140, 593, 918
BmsI	GCATC	5 cut(s)	1279, 1451, 1616, 1796, 1870
BpiI	GAAGAC	2 cut(s)	12, 746
BplI	GAGNNNNNCTC	1 cut(s)	1891
BpmI	CTGGAG	3 cut(s)	663, 829, 1572
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	2 cut(s)	234, 315
BsaI	GGTCTC	1 cut(s)	1719
BsaJI	CCNNGG	3 cut(s)	102, 139, 1423
Bsc4I	CCNNNNNNNGG	4 cut(s)	480, 501, 923, 1271
Bse1I	ACTGG	2 cut(s)	413, 1744
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	593, 918
BseDI	CCNNGG	3 cut(s)	102, 139, 1423
BseGI	GGATG	5 cut(s)	886, 940, 1495, 1787, 1885
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	4 cut(s)	480, 501, 923, 1271
BseMII	CTCAG	2 cut(s)	723, 1026
BseNI	ACTGG	2 cut(s)	413, 1744
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	4 cut(s)	23, 801, 1220, 1410
Bsh1236I	CGCG	3 cut(s)	135, 305, 471
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	107, 138, 613, 780, 954
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	3 cut(s)	255, 1816, 1857
BsiHKCI	CYCGRG	2 cut(s)	385, 1653
BsiSI	CCGG	3 cut(s)	139, 156, 321
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	4 cut(s)	480, 501, 923, 1271
BsmAI	GTCTC	5 cut(s)	322, 639, 1178, 1350, 1719
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	2 cut(s)	429, 517
BsnI	GGCC	5 cut(s)	107, 138, 613, 780, 954
Bso31I	GGTCTC	1 cut(s)	1719
BsoBI	CYCGRG	2 cut(s)	385, 1653
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	255, 1816, 1857
BspANI	GGCC	5 cut(s)	107, 138, 613, 780, 954
BspCNI	CTCAG	2 cut(s)	722, 1025
BspFNI	CGCG	3 cut(s)	135, 305, 471
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	6 cut(s)	146, 179, 325, 343, 344, 493
BspMI	ACCTGC	1 cut(s)	1508
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	1667
BspTNI	GGTCTC	1 cut(s)	1719
BsrI	ACTGG	2 cut(s)	413, 1744
BssECI	CCNNGG	3 cut(s)	102, 139, 1423
BssNI	GRCGYC	2 cut(s)	234, 315
BssT1I	CCWWGG	1 cut(s)	1423
Bst2UI	CCWGG	2 cut(s)	593, 918
Bst4CI	ACNGT	9 cut(s)	271, 328, 499, 665, 703, 838, 982, 1252, 1435
Bst6I	CTCTTC	1 cut(s)	1530
BstACI	GRCGYC	2 cut(s)	234, 315
BstAFI	CTTAAG	1 cut(s)	1667
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	5 cut(s)	115, 119, 255, 439, 1785
BstDEI	CTNAG	3 cut(s)	709, 803, 1012
BstENI	CCTNNNNNAGG	1 cut(s)	921
BstF5I	GGATG	5 cut(s)	886, 940, 1495, 1787, 1885
BstFNI	CGCG	3 cut(s)	135, 305, 471
BstHHI	GCGC	2 cut(s)	135, 473
BstMAI	GTCTC	5 cut(s)	322, 639, 1178, 1350, 1719
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 254, 263, 272, 447, 786
BstNI	CCWGG	2 cut(s)	593, 918
BstNSI	RCATGY	5 cut(s)	579, 915, 943, 1678, 1758
BstSCI	CCNGG	3 cut(s)	138, 591, 916
BstSFI	CTRYAG	1 cut(s)	1512
BstUI	CGCG	3 cut(s)	135, 305, 471
BstV1I	GCAGC	4 cut(s)	23, 801, 1220, 1410
BstV2I	GAAGAC	2 cut(s)	12, 746
BstX2I	RGATCY	3 cut(s)	144, 197, 333
BstYI	RGATCY	3 cut(s)	144, 197, 333
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	5 cut(s)	107, 138, 613, 780, 954
BtsCI	GGATG	5 cut(s)	886, 940, 1495, 1787, 1885
BtsIMutI	CAGTG	5 cut(s)	406, 495, 699, 1526, 1576
BveI	ACCTGC	1 cut(s)	1508
Cac8I	GCNNGC	5 cut(s)	115, 119, 255, 439, 1785
CaiI	CAGNNNCTG	5 cut(s)	336, 832, 1298, 1382, 1445
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	135, 473
Cfr13I	GGNCC	5 cut(s)	342, 379, 411, 492, 611
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	673, 1544, 1681
CviQI	GTAC	3 cut(s)	673, 1544, 1681
DdeI	CTNAG	3 cut(s)	709, 803, 1012
DraIII	CACNNNGTG	1 cut(s)	1254
DrdI	GACNNNNNNGTC	2 cut(s)	239, 1757
DseDI	GACNNNNNNGTC	2 cut(s)	239, 1757
EaeI	YGGCCR	2 cut(s)	136, 778
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	1530
EarI	CTCTTC	1 cut(s)	1530
EciI	GGCGGA	2 cut(s)	298, 403
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	1423
Eco147I	AGGCCT	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	1719
Eco47I	GGWCC	4 cut(s)	342, 379, 411, 492
Eco52I	CGGCCG	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	6, 1325
Eco88I	CYCGRG	2 cut(s)	385, 1653
EcoNI	CCTNNNNNAGG	1 cut(s)	921
EcoO109I	RGGNCCY	3 cut(s)	342, 379, 611
EcoRII	CCWGG	2 cut(s)	591, 916
EcoT14I	CCWWGG	1 cut(s)	1423
ErhI	CCWWGG	1 cut(s)	1423
Esp3I	CGTCTC	1 cut(s)	322
FaqI	GGGAC	1 cut(s)	355
FauI	CCCGC	2 cut(s)	271, 1817
FbaI	TGATCA	4 cut(s)	3, 204, 967, 1276
FblI	GTMKAC	3 cut(s)	125, 243, 1112
Fnu4HI	GCNGC	7 cut(s)	37, 136, 442, 790, 952, 1209, 1399
FokI	GGATG	5 cut(s)	893, 947, 1502, 1774, 1892
Fsp4HI	GCNGC	7 cut(s)	37, 136, 442, 790, 952, 1209, 1399
FspBI	CTAG	1 cut(s)	1547
GlaI	GCGC	2 cut(s)	134, 472
GluI	GCNGC	7 cut(s)	37, 136, 442, 790, 952, 1209, 1399
GsuI	CTGGAG	3 cut(s)	663, 829, 1572
HaeIII	GGCC	5 cut(s)	107, 138, 613, 780, 954
HapII	CCGG	3 cut(s)	139, 156, 321
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	135, 473
Hin1I	GRCGYC	2 cut(s)	234, 315
Hin6I	GCGC	2 cut(s)	133, 471
HinP1I	GCGC	2 cut(s)	133, 471
HincII	GTYRAC	4 cut(s)	126, 1413, 1777, 1905
HindII	GTYRAC	4 cut(s)	126, 1413, 1777, 1905
HindIII	AAGCTT	1 cut(s)	1664
HinfI	GANTC	7 cut(s)	279, 485, 811, 829, 1295, 1373, 1906
HpaII	CCGG	3 cut(s)	139, 156, 321
HphI	GGTGA	4 cut(s)	593, 1286, 1532, 1837
Hpy166II	GTNNAC	9 cut(s)	126, 244, 495, 661, 1113, 1413, 1431, 1777, 1905
Hpy188I	TCNGA	5 cut(s)	393, 712, 758, 772, 834
Hpy8I	GTNNAC	9 cut(s)	126, 244, 495, 661, 1113, 1413, 1431, 1777, 1905
Hpy99I	CGWCG	9 cut(s)	127, 130, 236, 239, 275, 317, 401, 422, 437
HpyAV	CCTTC	7 cut(s)	440, 484, 602, 712, 1174, 1315, 1349
HpyCH4III	ACNGT	9 cut(s)	271, 328, 499, 665, 703, 838, 982, 1252, 1435
HpyCH4IV	ACGT	2 cut(s)	234, 315
HpyCH4V	TGCA	6 cut(s)	1208, 1292, 1454, 1501, 1607, 1787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 254, 263, 272, 447, 786
HpyF3I	CTNAG	3 cut(s)	709, 803, 1012
HpySE526I	ACGT	2 cut(s)	234, 315
Hsp92I	GRCGYC	2 cut(s)	234, 315
HspAI	GCGC	2 cut(s)	133, 471
KflI	GGGWCCC	1 cut(s)	342
Ksp22I	TGATCA	4 cut(s)	3, 204, 967, 1276
LmnI	GCTCC	3 cut(s)	130, 183, 1379
Lsp1109I	GCAGC	4 cut(s)	23, 801, 1220, 1410
LweI	GCATC	5 cut(s)	1279, 1451, 1616, 1796, 1870
MaeI	CTAG	1 cut(s)	1547
MaeII	ACGT	2 cut(s)	234, 315
MaeIII	GTNAC	5 cut(s)	571, 976, 1019, 1435, 1798
MboII	GAAGA	9 cut(s)	12, 751, 763, 785, 904, 1072, 1229, 1232, 1547
MfeI	CAATTG	1 cut(s)	1368
MflI	RGATCY	3 cut(s)	144, 197, 333
MhlI	GDGCHC	3 cut(s)	255, 1816, 1857
MlsI	TGGCCA	1 cut(s)	780
MluCI	AATT	7 cut(s)	598, 623, 652, 1131, 1169, 1224, 1368
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	2 cut(s)	820, 1900
MmeI	TCCRAC	3 cut(s)	195, 371, 1135
Mox20I	TGGCCA	1 cut(s)	780
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	3 cut(s)	1137, 1419, 1668
MslI	CAYNNNNRTG	2 cut(s)	910, 1560
Msp20I	TGGCCA	1 cut(s)	780
MspA1I	CMGCKG	2 cut(s)	845, 1211
MspCI	CTTAAG	1 cut(s)	1667
MspI	CCGG	3 cut(s)	139, 156, 321
MspR9I	CCNGG	3 cut(s)	140, 593, 918
MunI	CAATTG	1 cut(s)	1368
Mva1269I	GAATGC	2 cut(s)	429, 517
MvaI	CCWGG	2 cut(s)	593, 918
MvnI	CGCG	3 cut(s)	135, 305, 471
MwoI	GCNNNNNNNGC	6 cut(s)	245, 254, 263, 272, 447, 786
NciI	CCSGG	1 cut(s)	140
NlaIV	GGNNCC	6 cut(s)	146, 179, 325, 343, 344, 493
NmeAIII	GCCGAG	2 cut(s)	127, 274
NmuCI	GTSAC	4 cut(s)	571, 976, 1019, 1435
NspI	RCATGY	5 cut(s)	579, 915, 943, 1678, 1758
NspV	TTCGAA	1 cut(s)	521
PagI	TCATGA	1 cut(s)	210
PaqCI	CACCTGC	1 cut(s)	1508
PceI	AGGCCT	1 cut(s)	107
PciI	ACATGT	3 cut(s)	911, 1674, 1754
PcsI	WCGNNNNNNNCGW	4 cut(s)	237, 309, 441, 1651
PctI	GAATGC	2 cut(s)	429, 517
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	5 cut(s)	279, 485, 829, 1295, 1373
PflFI	GACNNNGTC	1 cut(s)	838
PfoI	TCCNGGA	1 cut(s)	916
PkrI	GCNGC	7 cut(s)	38, 137, 443, 791, 953, 1210, 1400
PleI	GAGTC	2 cut(s)	819, 1900
PpsI	GAGTC	2 cut(s)	819, 1900
PpuMI	RGGWCCY	2 cut(s)	342, 379
PscI	ACATGT	3 cut(s)	911, 1674, 1754
Psp5II	RGGWCCY	2 cut(s)	342, 379
Psp6I	CCWGG	2 cut(s)	591, 916
PspGI	CCWGG	2 cut(s)	591, 916
PspN4I	GGNNCC	6 cut(s)	146, 179, 325, 343, 344, 493
PspPI	GGNCC	5 cut(s)	342, 379, 411, 492, 611
PspPPI	RGGWCCY	2 cut(s)	342, 379
PsrI	GAACNNNNNNTAC	2 cut(s)	1664, 1696
PstNI	CAGNNNCTG	5 cut(s)	336, 832, 1298, 1382, 1445
PsuI	RGATCY	3 cut(s)	144, 197, 333
PsyI	GACNNNGTC	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	3 cut(s)	674, 1545, 1682
RsaNI	GTAC	3 cut(s)	673, 1544, 1681
RseI	CAYNNNNRTG	2 cut(s)	910, 1560
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	1137, 1419, 1668
SatI	GCNGC	7 cut(s)	37, 136, 442, 790, 952, 1209, 1399
Sau96I	GGNCC	5 cut(s)	342, 379, 411, 492, 611
SchI	GAGTC	2 cut(s)	820, 1900
ScrFI	CCNGG	3 cut(s)	140, 593, 918
SduI	GDGCHC	3 cut(s)	255, 1816, 1857
SfaNI	GCATC	5 cut(s)	1279, 1451, 1616, 1796, 1870
SfcI	CTRYAG	1 cut(s)	1512
SfuI	TTCGAA	1 cut(s)	521
SgrDI	CGTCGACG	1 cut(s)	124
SinI	GGWCC	4 cut(s)	342, 379, 411, 492
SmiMI	CAYNNNNRTG	2 cut(s)	910, 1560
SmlI	CTYRAG	2 cut(s)	362, 1667
SmoI	CTYRAG	2 cut(s)	362, 1667
Sse9I	AATT	7 cut(s)	598, 623, 652, 1131, 1169, 1224, 1368
SseBI	AGGCCT	1 cut(s)	107
SspI	AATATT	1 cut(s)	1066
SspMI	CTAG	1 cut(s)	1547
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	138, 591, 916
StyI	CCWWGG	1 cut(s)	1423
TaaI	ACNGT	9 cut(s)	271, 328, 499, 665, 703, 838, 982, 1252, 1435
TaiI	ACGT	2 cut(s)	237, 318
TaqI	TCGA	8 cut(s)	125, 219, 231, 396, 510, 521, 650, 1693
TasI	AATT	7 cut(s)	598, 623, 652, 1131, 1169, 1224, 1368
TatI	WGTACW	1 cut(s)	1543
TauI	GCSGC	3 cut(s)	138, 444, 954
TfiI	GAWTC	5 cut(s)	279, 485, 829, 1295, 1373
Tru1I	TTAA	3 cut(s)	1137, 1419, 1668
Tru9I	TTAA	3 cut(s)	1137, 1419, 1668
TscAI	CASTG	5 cut(s)	413, 502, 706, 1533, 1576
TseFI	GTSAC	4 cut(s)	571, 976, 1019, 1435
TseI	GCWGC	4 cut(s)	36, 789, 1208, 1398
Tsp45I	GTSAC	4 cut(s)	571, 976, 1019, 1435
TspDTI	ATGAA	9 cut(s)	227, 466, 621, 756, 911, 1062, 1073, 1221, 1785
TspGWI	ACGGA	4 cut(s)	143, 190, 435, 1547
TspRI	CASTG	5 cut(s)	413, 502, 706, 1533, 1576
Tth111I	GACNNNGTC	1 cut(s)	838
Vha464I	CTTAAG	1 cut(s)	1667
VpaK11BI	GGWCC	4 cut(s)	342, 379, 411, 492
XagI	CCTNNNNNAGG	1 cut(s)	921
XapI	RAATTY	2 cut(s)	623, 652
XceI	RCATGY	5 cut(s)	579, 915, 943, 1678, 1758
XmiI	GTMKAC	3 cut(s)	125, 243, 1112
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	1547
ZraI	GACGTC	2 cut(s)	235, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.