AT3G18215

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015034
Physical Location & Seq
Forward (+)
6240769 .. 6243078
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18215.1

Sequence Viewer

Length: 735 bp
ATGTGGACGGAGGAATCTTTGGATTTAGTGCTTGTGCCGACGGGTCTGGTCGTGATGGTTGCTTACCATGTCTGGCTCGTCTACGCTATTCTTCACCGCCCCAAGCTCACTGTTATCGCTCTCAACGCTGAGTCTCGACGACAATGGGTCTTCTCTATGATGACTGAACCACTGAAAAATGGTACCTTGGCTGTTCAGACAATCCGGAACAACATAATGGCATCAACCCTTTTAGCCACAACAGCAATCACTTTATGTTCCATCATCGGCGTCTTTGTAAGCAACTCGTCATCTTCAAAATCCACGGCAACAAATCTCATATACGGGAGCAAAAGCCCTCGCTTAGCGTCATTCAAGAACTTTGCAATCCTGATCTGTTTCCTCATGGCCTTTCTCTGCAACATCCAGTCAATCAGGTATTACGCTCACGTAAGTTTCCTAGTCACAGTGCCTGTCTCAAGAGGGAAAAGAGAGCACTGCGAGTACGTGTCTAGAAACCTGAACCGAGCTAGCTACTTCTGGTCTCTCGGATTACGGGCTTTCTACTTCTCCTTCCCTCTCTTCTTATGGACCTTCGGGCCAATCCCGATGTTTGTGTGCTGTTGTATGATGTCCTCGATTCTATATTTCTTGGACACGACCACTAGTTTTACCAGGCATCTTCATAGCCAATCGTTCAGAGAAACGGCTGATTCAATGGACGGCGAAATCGAATCAGCTGTTCATACTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

244

Amino Acids

27.64

Weight (kDa)

9.02

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 10 - 215 7e-72 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18215 AT3G18215
fragaria_vesca FvH4_5g16810
malus_domestica MD06G1222100.v1.1 MD15G1311900.v1.1
prunus_persica Prupe.5G226500_v2.0.a1 Prupe.5G226500_v2.0.a1
pyrus_communis pycom06g19760
rosa_chinensis RchiOBHm_Chr7g0179261
rosa_laevigata RLG00000005368
rosa_multiflora Rmu_sc0006939.1_g000006
rosa_roxburghii Rroxscaffold_3G00274170
rosa_rugosa Rorug06G0422800
rosa_samantha Rh7CG023300 Rh7DG022600
rosa_wichuraiana Rw7G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 184, 485
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 297, 355, 696
AhdI GACNNNNNGTC 1 cut(s) 146
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 653
AluBI AGCT 4 cut(s) 106, 509, 513, 719
AluI AGCT 4 cut(s) 106, 509, 513, 719
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 3 cut(s) 138, 460, 528
AlwNI CAGNNNCTG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 387, 578
Asp718I GGTACC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 570, 578
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 509
AvaII GGWCC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 2 cut(s) 49, 269
BceAI ACGGC 3 cut(s) 321, 702, 718
BciT130I CCWGG 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 138, 460, 528
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 4 cut(s) 440, 492, 510, 645
BfmI CTRYAG 1 cut(s) 731
BlpI GCTNAGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 655
Bme18I GGWCC 1 cut(s) 570
BmeRI GACNNNNNGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 570, 578
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 655
BmsI GCATC 2 cut(s) 230, 667
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 442
BsaAI YACGTR 2 cut(s) 430, 487
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 186, 303
BsaWI WCCGGW 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 1 cut(s) 655
BseDI CCNNGG 2 cut(s) 186, 303
BseGI GGATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 406
BshFI GGCC 2 cut(s) 389, 580
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 138, 460, 528
BsnI GGCC 2 cut(s) 389, 580
Bso31I GGTCTC 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 477
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 372
Bsp1720I GCTNAGC 1 cut(s) 343
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 389, 580
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 186, 303
BssMI GATC 1 cut(s) 372
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 655
Bst4CI ACNGT 2 cut(s) 112, 448
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 270
BstBAI YACGTR 2 cut(s) 430, 487
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 2 cut(s) 129, 343
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 3 cut(s) 138, 460, 528
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 125, 242
BstNI CCWGG 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 653
BstSFI CTRYAG 1 cut(s) 731
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 389, 580
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 4 cut(s) 108, 170, 453, 475
Cac8I GCNNGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 2 cut(s) 570, 578
CseI GACGC 2 cut(s) 259, 336
Csp6I GTAC 2 cut(s) 183, 484
CviAII CATG 2 cut(s) 68, 385
CviQI GTAC 2 cut(s) 183, 484
DdeI CTNAG 2 cut(s) 129, 343
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DriI GACNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 566
Eam1105I GACNNNNNGTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 653
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 71, 388
FatI CATG 2 cut(s) 67, 384
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 389
FspBI CTAG 4 cut(s) 440, 492, 510, 645
HaeIII GGCC 2 cut(s) 389, 580
HapII CCGG 1 cut(s) 205
HgaI GACGC 2 cut(s) 259, 336
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 71, 388
HinfI GANTC 5 cut(s) 14, 131, 619, 692, 713
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 6, 82
Hpy188I TCNGA 3 cut(s) 198, 530, 680
Hpy188III TCNNGA 8 cut(s) 52, 135, 205, 355, 370, 459, 492, 586
Hpy8I GTNNAC 2 cut(s) 6, 82
Hpy99I CGWCG 2 cut(s) 43, 141
HpyAV CCTTC 2 cut(s) 562, 583
HpyCH4III ACNGT 2 cut(s) 112, 448
HpyCH4IV ACGT 2 cut(s) 429, 486
HpyCH4V TGCA 2 cut(s) 365, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 242
HpyF3I CTNAG 2 cut(s) 129, 343
HpySE526I ACGT 2 cut(s) 429, 486
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 71, 388
Kpn2I TCCGGA 1 cut(s) 204
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 327
LweI GCATC 2 cut(s) 230, 667
MaeI CTAG 4 cut(s) 440, 492, 510, 645
MaeII ACGT 2 cut(s) 429, 486
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 5 cut(s) 83, 142, 285, 553, 653
MhlI GDGCHC 1 cut(s) 477
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 6 cut(s) 4, 348, 392, 455, 567, 625
MroI TCCGGA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 655
MvaI CCWGG 1 cut(s) 655
MwoI GCNNNNNNNGC 2 cut(s) 125, 242
NdeII GATC 1 cut(s) 372
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 2 cut(s) 71, 388
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PfeI GAWTC 4 cut(s) 14, 619, 692, 713
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 2 cut(s) 430, 487
Psp6I CCWGG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 653
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 570, 578
PstNI CAGNNNCTG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 184, 485
RsaNI GTAC 2 cut(s) 183, 484
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 2 cut(s) 570, 578
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 655
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 2 cut(s) 230, 667
SfcI CTRYAG 1 cut(s) 731
SinI GGWCC 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SpeI ACTAGT 1 cut(s) 644
SsiI CCGC 1 cut(s) 97
SspMI CTAG 4 cut(s) 440, 492, 510, 645
StyD4I CCNGG 1 cut(s) 653
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 112, 448
TaiI ACGT 2 cut(s) 432, 489
TaqI TCGA 3 cut(s) 136, 617, 711
TfiI GAWTC 4 cut(s) 14, 619, 692, 713
TscAI CASTG 4 cut(s) 115, 177, 453, 482
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 653, 713
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 4 cut(s) 115, 177, 453, 482
VpaK11BI GGWCC 1 cut(s) 570
XbaI TCTAGA 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 4 cut(s) 440, 492, 510, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.