Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005853

Physical Location & Seq

Genomic Coordinates Forward (+)

56106809 .. 56110171

Gene Structure 3363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0422800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAATAGGCAGGTCACCTACTCCAAGAGAAGGAACGGCCTGTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCTAAGGTTTCTCTCCTCATGGTTTCCTCTTCCGGAAAGCTTCATGAATTCATCAGCCCCTCCACCACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTCCTCGGAATTGACCTTTGGAAATCGCACTATGAGACAATGCAAGAAAATTTGAAGAAGCTGAAAGAGATAAATAAGAGTCTTAGGAGGCAGATCAGCCACAGGGTGGGCGAGTGTTTGAACGATCTGAGATTCGCTGAACTGCACAGTCTTGAGAAAGAAATGGAAAGCGCTGTAGAAGTTGTTCGTAATCGCAAGCTGAAGCTGATCTCCAATCAGATTGATACCAAGAGGAAAAAGATTCGGAATGCAACAGAGTGCAACAGGAGACTCTATGAATATGATGCAATGGAGGAACCACACTACGGATTGGTTGACGATGGAGGAGATTATTATGATTCTGCCGTCATTGGCTACTCAGCAAATGAAGACCCTCACAATGTATTTCCTTTAAGGCTGCAACCTTCTCATCATCCTAATCTTCACCGCGGAGGAGGAAGTTCAGATCTTACGACCTACTCTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

229

Amino Acids

26.48

Weight (kDa)

9.19

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 165	3e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17980 AT1G17980
fragaria_vesca	FvH4_5g16820 FvH4_5g16820 FvH4_5g16820 FvH4_5g16820
malus_domestica	MD06G1222200.v1.1 MD09G1233900.v1.1 MD14G1231300.v1.1 MD17G1263100.v1.1
prunus_persica	Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1
pyrus_communis	pycom06g19770 pycom14g19250 pycom17g26340
rosa_chinensis	RchiOBHm_Chr7g0179251
rosa_laevigata	RLG00000005369
rosa_multiflora	Rmu_sc0006939.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274180
rosa_rugosa	Rorug06G0422700 Rorug06G0422800 Rorug06G0422800
rosa_samantha	Rh7AG022000 Rh7BG021900 Rh7CG023200 Rh7DG022500
rosa_wichuraiana	Rw7G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	646, 648
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	167, 268
AcuI	CTGAAG	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	203, 212
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
AgsI	TTSAA	3 cut(s)	88, 274, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	6 cut(s)	103, 160, 220, 280, 418, 424
AluI	AGCT	6 cut(s)	103, 160, 220, 280, 418, 424
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	248, 481
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	2 cut(s)	79, 93
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	2 cut(s)	167, 268
ArsI	GACNNNNNNTTYG	1 cut(s)	664
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	49, 635
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	2 cut(s)	94, 548
BcoDI	GTCTC	2 cut(s)	248, 481
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	1 cut(s)	617
BlsI	GCNGC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	2 cut(s)	109, 493
BpiI	GAAGAC	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	223, 646
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 325, 524
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	223, 646
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	338, 591
BseRI	GAGGAG	4 cut(s)	125, 212, 558, 666
BseXI	GCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	81, 95
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
BsmAI	GTCTC	2 cut(s)	248, 481
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	81, 95
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
BspACI	CCGC	2 cut(s)	646, 648
BspANI	GGCC	2 cut(s)	81, 95
BspCNI	CTCAG	2 cut(s)	339, 590
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	223, 646
BssMI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
Bst4CI	ACNGT	2 cut(s)	109, 368
Bst6I	CTCTTC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	123, 302, 347, 577
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	648
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	6 cut(s)	18, 24, 315, 346, 429, 667
BstMAI	GTCTC	2 cut(s)	248, 481
BstMBI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	15, 664
BstYI	RGATCY	2 cut(s)	15, 664
BsuRI	GGCC	2 cut(s)	81, 95
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	392
Cfr42I	CCGCGG	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	202, 211
CviAII	CATG	2 cut(s)	139, 164
CviQI	GTAC	2 cut(s)	202, 211
DdeI	CTNAG	4 cut(s)	123, 302, 347, 577
DpnI	GATC	6 cut(s)	17, 23, 314, 345, 428, 666
DpnII	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	142, 167
FaiI	YATR	6 cut(s)	140, 165, 252, 495, 501, 555
FatI	CATG	2 cut(s)	138, 163
Fnu4HI	GCNGC	1 cut(s)	617
FokI	GGATG	1 cut(s)	618
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	617
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	81, 95
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	142, 167
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	298, 351, 460, 489, 557
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	49, 635
Hpy166II	GTNNAC	2 cut(s)	202, 535
Hpy188I	TCNGA	5 cut(s)	227, 348, 438, 465, 664
Hpy188III	TCNNGA	6 cut(s)	19, 25, 88, 153, 164, 371
Hpy8I	GTNNAC	2 cut(s)	202, 535
HpyAV	CCTTC	3 cut(s)	66, 85, 633
HpyCH4III	ACNGT	2 cut(s)	109, 368
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	262, 364, 470, 480, 506, 619
HpyF3I	CTNAG	4 cut(s)	123, 302, 347, 577
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	142, 167
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	152
KspI	CCGCGG	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	7 cut(s)	32, 38, 95, 166, 227, 307, 469
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	2 cut(s)	109, 493
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	40, 55
MalI	GATC	6 cut(s)	17, 23, 314, 345, 428, 666
MboI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
MboII	GAAGA	4 cut(s)	141, 286, 599, 632
MflI	RGATCY	2 cut(s)	15, 664
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	167, 228, 268
MlyI	GAGTC	2 cut(s)	307, 483
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	648
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	1 cut(s)	648
NdeII	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
NlaIII	CATG	2 cut(s)	142, 167
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	40, 55
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	351, 460, 557
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	618
PleI	GAGTC	2 cut(s)	306, 483
PpsI	GAGTC	2 cut(s)	306, 483
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	516
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PsuI	RGATCY	2 cut(s)	15, 664
RsaI	GTAC	2 cut(s)	203, 212
RsaNI	GTAC	2 cut(s)	202, 211
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	649
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	1 cut(s)	617
Sau3AI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
SchI	GAGTC	2 cut(s)	307, 483
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 493
SfcI	CTRYAG	1 cut(s)	393
Sfr303I	CCGCGG	1 cut(s)	649
SgrBI	CCGCGG	1 cut(s)	649
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	167, 228, 268
SsiI	CCGC	2 cut(s)	646, 648
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	109, 368
TaiI	ACGT	1 cut(s)	42
TasI	AATT	3 cut(s)	167, 228, 268
TfiI	GAWTC	3 cut(s)	351, 460, 557
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	40, 55
TseI	GCWGC	1 cut(s)	616
Tsp45I	GTSAC	2 cut(s)	40, 55
TspDTI	ATGAA	5 cut(s)	152, 160, 180, 510, 600
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	167, 268
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.