Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005853

Physical Location & Seq

Genomic Coordinates Reverse (-)

6187465 .. 6191708

Gene Structure 4244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGGCTAGTGTCCAGCAAAATGGGCAACGGTTTGGCGTTTCAGAACCTATCTCTATGGGAGGACCAACGGAGTTTGATGTGATCAAGACAAGAGAGCTCGAGAAGCACTTGCAAGATGTTGGATTGTACGAGAGCAAGGAGGAAGCTGTTAGAAGGGAGGAGGTTCTGGGGATACTAGATCAGATTGTAAAAACATGGATTAAAACAATCAGCCGCGCCAAAGGGTTGAATGATCAGCTGCTTCATGAGGCGAATGCAAAGATATTTACTTTCGGTTCTTATCGACTAGGGGTACATGGACCTGGTGCTGATATAGACACTTTATGTGTGGGACCTAGACATGCAACTAGAGAAGGTGATTTCTTTGGTGAGCTACAAAGAATGCTGTCAGAAATGCCGGAAGTAACTGAACTGCACCCTGTGCCTGATGCTCATGTTCCATTGATGGGATTCAAACTTAATGGAGTTTCTATAGATCTCCTTTATGCACAACTTCCACTCTGGGTTATACCTGAGGACTTAGATTTATCACAGGACTCCATTCTACAGAATGCTGATGAGCAAACTGTTCGAAGTCTCAACGGTTGTAGAGTTACTGACCAAATCTTGCGTCTGGTTCCAAACATTCAGAATTTCAGAACAACATTAAGATGCATGAGATTTTGGGCCAAACGACGTGGAGTATACTCTAATGTCTCGGGATTTCTTGGTGGTATAAACTGGGCATTGCTTGTAGCTCGGATATGTCAACTTTATCCTAACGCCCTCCCTAATATTTTAGTGTCTCGGTTCTTTAGGGTCTTCTATCAATGGAATTGGCCGAACGCCATTTTTCTTTGTTCTCCGGATGAAGGATCCCTTGGTCTTCAAGTTTGGGATCCTAGAATAAACCCAAAGGATCGGTTGCATATAATGCCCATCATTACTCCTGCTTATCCTTGTATGAACTCTAGTTACAATGTCTCTGAAAGTACATTGCGGATTATGAAAGGAGAGTTTCAGAGAGGAAACGAAATATGTGAGGCTATGGAATCAAACAAAGCTGACTGGGATACCCTTTTTGAGCCATTTGCATTCTTTGAAGCGTATAAAAACTATCTACAGATAGACATTTCTGCTGCAAATGTCGATGATCTAAGAAAATGGAAAGGCTGGGTTGAGTCACGCCTCCGCCAGCTCACACTGAAGATCGAGAGACATTTTAAAATGCTTCATTGCCACCCTCATCCCCATGATTTTCAAGACACATCCCGGCCACTCCATTGCTCTTACTTCATGGGTCTGCAACGTAAACAAGGAGTTCCAGCAGCAGAAGGCGAGCAATTCGATATCAGAAGAACCGTTGAGGAGTTTAAACACACTGTCAACGCTTACACATTGTGGATTCCAGGGATGGAGATTAGTGTTGGCCATATAAAACGGAGAAGCTTACCTAATTTTGTGTTTCCTGGTGGAGTTAGACCTTCACATACCTCTAAAGGAACATGGGACAGCAATCGCCGTTCAGAGCACAGAAATTCTTCTACATCAAGTGCACCAGCTGCTACTACCACTACTACCGAAATGAGTTCTGAAAGTAAAGCTGGTTCTAACAGTCCAGTTGATGGGAAGAAGAGAAAATGGGGAGATAGTGAAACACTCACCGATCAGCCAAGGAACTCTAAACACATTGCTGTTTCAGTGCCTGTAGAGAATTGTGAAGGCGGGAGTCCAAATCCATCTGTTGGATCAATTTGTTCAAGTCCTATGAAAGATTATTGTACAAACGGTAAATCTGAGCCTATTAGTAAGGATCCACCAGAAAATGTTGTTGCTTTCAGTAAGGATCCACCAGAGAGTCTTCCGATAGAAAAGATAGCCACTCCTCAAGCTCATGAAACTGAGGAGCTTGAAGAAAGTTTTGATTTTGGAAACCAAGTGATTGAGCAGATATCTCATAAAGTTGCAGTCCTGTCTGCTACTGCAACTATACCTCCATTCGAAGCTACTTCAAATGGCTCTCCTTTCCCTTATGAAGCAGTGGAAGAACTTGAGGTTCTTCCCACGCGACAGCCCGATGCGGCACATAGACCTTCAGTACAACAGCGAAAACCGATAATCAAATTGAGCTTCACGTCTCTAGGCAAAACCAATGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

713

Amino Acids

80.18

Weight (kDa)

6.26

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	1 - 79	1.7e-31	Poly(A) polymerase nucleotidyltransferase domain
PAP_central	PF04928	84 - 228	1e-66	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	232 - 290	8.9e-14	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17980 AT1G17980
fragaria_vesca	FvH4_5g16820 FvH4_5g16820 FvH4_5g16820 FvH4_5g16820
malus_domestica	MD06G1222200.v1.1 MD09G1233900.v1.1 MD14G1231300.v1.1 MD17G1263100.v1.1
prunus_persica	Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1
pyrus_communis	pycom06g19770 pycom14g19250 pycom17g26340
rosa_chinensis	RchiOBHm_Chr7g0179251
rosa_laevigata	RLG00000005369
rosa_multiflora	Rmu_sc0006939.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274180
rosa_rugosa	Rorug06G0422700 Rorug06G0422800 Rorug06G0422800
rosa_samantha	Rh7AG022000 Rh7BG021900 Rh7CG023200 Rh7DG022500
rosa_wichuraiana	Rw7G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1604, 1724
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	2 cut(s)	216, 2047
AccIII	TCCGGA	1 cut(s)	844
AciI	CCGC	5 cut(s)	214, 979, 1171, 1704, 2060
AcoI	YGGCCR	3 cut(s)	818, 1253, 1408
AcsI	RAATTY	2 cut(s)	631, 1516
AcuI	CTGAAG	2 cut(s)	1205, 2058
AdeI	CACNNNGTG	2 cut(s)	421, 1380
AfaI	GTAC	5 cut(s)	128, 294, 973, 1762, 2079
AfiI	CCNNNNNNNGG	4 cut(s)	446, 851, 1604, 1724
AgsI	TTSAA	8 cut(s)	229, 454, 869, 1082, 1241, 1740, 1892, 1992
AjiI	CACGTC	2 cut(s)	677, 2115
AjnI	CCWGG	3 cut(s)	301, 1387, 1447
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
Alw21I	GWGCWC	3 cut(s)	99, 1512, 1537
Alw26I	GTCTC	6 cut(s)	581, 700, 789, 967, 1189, 2121
Alw44I	GTGCAC	1 cut(s)	1533
AlwNI	CAGNNNCTG	1 cut(s)	1685
Ama87I	CYCGRG	2 cut(s)	98, 697
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	4 cut(s)	666, 818, 1253, 1408
ApaLI	GTGCAC	1 cut(s)	1533
ApeKI	GCWGC	4 cut(s)	238, 1118, 1307, 1541
ApoI	RAATTY	2 cut(s)	631, 1516
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	1519
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	62, 299, 332, 666
AsuC2I	CCSGG	1 cut(s)	1252
AsuHPI	GGTGA	3 cut(s)	368, 380, 1633
AsuII	TTCGAA	2 cut(s)	571, 1980
AvaI	CYCGRG	2 cut(s)	98, 697
AvaII	GGWCC	3 cut(s)	62, 299, 332
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	1537
BalI	TGGCCA	1 cut(s)	1410
BamHI	GGATCC	4 cut(s)	854, 877, 1792, 1825
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	793, 857, 1832
Bbv12I	GWGCWC	3 cut(s)	99, 1512, 1537
BbvI	GCAGC	4 cut(s)	225, 1105, 1319, 1528
BccI	CCATC	5 cut(s)	439, 926, 1387, 1598, 1726
BceAI	ACGGC	1 cut(s)	1485
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	3 cut(s)	303, 1389, 1449
BciVI	GTATCC	2 cut(s)	165, 1045
BclI	TGATCA	2 cut(s)	81, 232
BcnI	CCSGG	1 cut(s)	1252
BcoDI	GTCTC	6 cut(s)	581, 700, 789, 967, 1189, 2121
BfaI	CTAG	8 cut(s)	6, 176, 287, 336, 348, 882, 951, 2120
BfmI	CTRYAG	4 cut(s)	471, 545, 1100, 1686
BfuI	GTATCC	2 cut(s)	165, 1045
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	6 cut(s)	214, 239, 1119, 1308, 1542, 2061
BlsI	GCNGC	6 cut(s)	215, 240, 1120, 1309, 1543, 2062
Bme1390I	CCNGG	4 cut(s)	303, 1252, 1389, 1449
Bme18I	GGWCC	3 cut(s)	62, 299, 332
BmeT110I	CYCGRG	2 cut(s)	98, 697
BmgBI	CACGTC	2 cut(s)	677, 2115
BmgT120I	GGNCC	4 cut(s)	62, 299, 332, 666
BmiI	GGNNCC	6 cut(s)	333, 618, 856, 879, 1794, 1827
BmrFI	CCNGG	4 cut(s)	303, 1252, 1389, 1449
BmrI	ACTGGG	2 cut(s)	730, 1057
BmsI	GCATC	3 cut(s)	418, 641, 2047
BmuI	ACTGGG	2 cut(s)	730, 1057
BpiI	GAAGAC	3 cut(s)	793, 857, 1832
Bpu14I	TTCGAA	2 cut(s)	571, 1980
BpuEI	CTTGAG	2 cut(s)	1851, 2051
BpuMI	CCSGG	1 cut(s)	1252
BsaJI	CCNNGG	3 cut(s)	859, 1388, 1652
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	1957, 1987
Bsc4I	CCNNNNNNNGG	4 cut(s)	446, 851, 1604, 1724
Bse1I	ACTGG	3 cut(s)	725, 1052, 1598
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	5 cut(s)	725, 974, 1213, 1261, 1668
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	3 cut(s)	303, 1389, 1449
BseDI	CCNNGG	3 cut(s)	859, 1388, 1652
BseGI	GGATG	4 cut(s)	853, 1225, 1247, 1398
BseLI	CCNNNNNNNGG	4 cut(s)	446, 851, 1604, 1724
BseMI	GCAATG	5 cut(s)	725, 974, 1213, 1261, 1668
BseMII	CTCAG	3 cut(s)	504, 1767, 1872
BseNI	ACTGG	3 cut(s)	725, 1052, 1598
BseRI	GAGGAG	4 cut(s)	173, 1361, 1854, 1898
BseSI	GKGCMC	1 cut(s)	1537
BseXI	GCAGC	4 cut(s)	225, 1105, 1319, 1528
BseYI	CCCAGC	1 cut(s)	1152
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	216, 2047
BshFI	GGCC	4 cut(s)	668, 820, 1255, 1410
BsiHKAI	GWGCWC	3 cut(s)	99, 1512, 1537
BsiHKCI	CYCGRG	2 cut(s)	98, 697
BsiSI	CCGG	3 cut(s)	398, 845, 1252
BslFI	GGGAC	2 cut(s)	345, 1502
BslI	CCNNNNNNNGG	4 cut(s)	446, 851, 1604, 1724
BsmAI	GTCTC	6 cut(s)	581, 700, 789, 967, 1189, 2121
BsmBI	CGTCTC	1 cut(s)	2121
BsmFI	GGGAC	2 cut(s)	345, 1502
BsmI	GAATGC	4 cut(s)	259, 387, 556, 1073
BsnI	GGCC	4 cut(s)	668, 820, 1255, 1410
BsoBI	CYCGRG	2 cut(s)	98, 697
Bsp119I	TTCGAA	2 cut(s)	571, 1980
Bsp1286I	GDGCHC	3 cut(s)	99, 1512, 1537
Bsp13I	TCCGGA	1 cut(s)	844
Bsp1407I	TGTACA	1 cut(s)	1760
BspACI	CCGC	5 cut(s)	214, 979, 1171, 1704, 2060
BspANI	GGCC	4 cut(s)	668, 820, 1255, 1410
BspCNI	CTCAG	3 cut(s)	505, 1768, 1873
BspEI	TCCGGA	1 cut(s)	844
BspFNI	CGCG	2 cut(s)	216, 2047
BspHI	TCATGA	2 cut(s)	244, 1873
BspLI	GGNNCC	6 cut(s)	333, 618, 856, 879, 1794, 1827
BspT104I	TTCGAA	2 cut(s)	571, 1980
BsrDI	GCAATG	5 cut(s)	725, 974, 1213, 1261, 1668
BsrGI	TGTACA	1 cut(s)	1760
BsrI	ACTGG	3 cut(s)	725, 1052, 1598
BssECI	CCNNGG	3 cut(s)	859, 1388, 1652
BssNAI	GTATAC	1 cut(s)	685
BssT1I	CCWWGG	2 cut(s)	859, 1652
Bst1107I	GTATAC	1 cut(s)	685
Bst2UI	CCWGG	3 cut(s)	303, 1389, 1449
Bst4CI	ACNGT	7 cut(s)	30, 568, 584, 1342, 1363, 1595, 1769
Bst6I	CTCTTC	1 cut(s)	1607
BstAPI	GCANNNNNTGC	3 cut(s)	421, 913, 1541
BstAUI	TGTACA	1 cut(s)	1760
BstBI	TTCGAA	2 cut(s)	571, 1980
BstC8I	GCNNGC	2 cut(s)	1175, 1319
BstDEI	CTNAG	5 cut(s)	513, 520, 1136, 1776, 1881
BstF5I	GGATG	4 cut(s)	853, 1225, 1247, 1398
BstFNI	CGCG	2 cut(s)	216, 2047
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	6 cut(s)	581, 700, 789, 967, 1189, 2121
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 103, 421, 913, 1541
BstNI	CCWGG	3 cut(s)	303, 1389, 1449
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	4 cut(s)	301, 1250, 1387, 1447
BstSFI	CTRYAG	4 cut(s)	471, 545, 1100, 1686
BstSLI	GKGCMC	1 cut(s)	1537
BstUI	CGCG	2 cut(s)	216, 2047
BstV1I	GCAGC	4 cut(s)	225, 1105, 1319, 1528
BstV2I	GAAGAC	3 cut(s)	793, 857, 1832
BstX2I	RGATCY	5 cut(s)	475, 854, 877, 1792, 1825
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	5 cut(s)	475, 854, 877, 1792, 1825
BstZ17I	GTATAC	1 cut(s)	685
Bsu36I	CCTNAGG	1 cut(s)	513
BsuI	GTATCC	2 cut(s)	165, 1045
BsuRI	GGCC	4 cut(s)	668, 820, 1255, 1410
BtrI	CACGTC	2 cut(s)	677, 2115
BtsCI	GGATG	4 cut(s)	853, 1225, 1247, 1398
BtsI	GCAGTG	1 cut(s)	2025
BtsIMutI	CAGTG	4 cut(s)	1181, 1359, 1686, 2025
Cac8I	GCNNGC	2 cut(s)	1175, 1319
CaiI	CAGNNNCTG	1 cut(s)	1685
CciI	TCATGA	2 cut(s)	244, 1873
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	4 cut(s)	62, 299, 332, 666
CseI	GACGC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	5 cut(s)	127, 293, 972, 1761, 2078
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviQI	GTAC	5 cut(s)	127, 293, 972, 1761, 2078
DdeI	CTNAG	5 cut(s)	513, 520, 1136, 1776, 1881
DraI	TTTAAA	2 cut(s)	1204, 1354
DraIII	CACNNNGTG	2 cut(s)	421, 1380
EaeI	YGGCCR	3 cut(s)	818, 1253, 1408
Eam1104I	CTCTTC	1 cut(s)	1607
EarI	CTCTTC	1 cut(s)	1607
EciI	GGCGGA	1 cut(s)	1160
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	859, 1652
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	2 cut(s)	1330, 1932
Eco47I	GGWCC	3 cut(s)	62, 299, 332
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	1205, 2058
Eco81I	CCTNAGG	1 cut(s)	513
Eco88I	CYCGRG	2 cut(s)	98, 697
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	301, 1387, 1447
EcoRV	GATATC	2 cut(s)	1330, 1932
EcoT14I	CCWWGG	2 cut(s)	859, 1652
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	2 cut(s)	859, 1652
Esp3I	CGTCTC	1 cut(s)	2121
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	2 cut(s)	345, 1502
FauI	CCCGC	1 cut(s)	1697
FbaI	TGATCA	2 cut(s)	81, 232
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	6 cut(s)	214, 239, 1119, 1308, 1542, 2061
FokI	GGATG	4 cut(s)	860, 1212, 1234, 1405
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	6 cut(s)	214, 239, 1119, 1308, 1542, 2061
FspBI	CTAG	8 cut(s)	6, 176, 287, 336, 348, 882, 951, 2120
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	6 cut(s)	214, 239, 1119, 1308, 1542, 2061
GsaI	CCCAGC	1 cut(s)	1156
HaeIII	GGCC	4 cut(s)	668, 820, 1255, 1410
HapII	CCGG	3 cut(s)	398, 845, 1252
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	2 cut(s)	749, 1366
HindII	GTYRAC	2 cut(s)	749, 1366
HindIII	AAGCTT	1 cut(s)	1426
HinfI	GANTC	7 cut(s)	450, 536, 1031, 1160, 1384, 1708, 1837
HpaII	CCGG	3 cut(s)	398, 845, 1252
HphI	GGTGA	3 cut(s)	368, 380, 1633
Hpy166II	GTNNAC	5 cut(s)	685, 749, 1292, 1366, 1535
Hpy188III	TCNNGA	8 cut(s)	85, 100, 245, 699, 845, 1192, 1241, 1874
Hpy8I	GTNNAC	5 cut(s)	685, 749, 1292, 1366, 1535
Hpy99I	CGWCG	1 cut(s)	678
HpyAV	CCTTC	7 cut(s)	147, 347, 845, 1307, 1473, 1694, 2082
HpyCH4III	ACNGT	7 cut(s)	30, 568, 584, 1342, 1363, 1595, 1769
HpyCH4IV	ACGT	3 cut(s)	676, 1288, 2114
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 103, 421, 913, 1541
HpyF3I	CTNAG	5 cut(s)	513, 520, 1136, 1776, 1881
HpySE526I	ACGT	3 cut(s)	676, 1288, 2114
HspAI	GCGC	1 cut(s)	216
Kpn2I	TCCGGA	1 cut(s)	844
Ksp22I	TGATCA	2 cut(s)	81, 232
LmnI	GCTCC	1 cut(s)	1885
Lsp1109I	GCAGC	4 cut(s)	225, 1105, 1319, 1528
LweI	GCATC	3 cut(s)	418, 641, 2047
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	8 cut(s)	6, 176, 287, 336, 348, 882, 951, 2120
MaeII	ACGT	3 cut(s)	676, 1288, 2114
MaeIII	GTNAC	4 cut(s)	403, 592, 953, 1161
MflI	RGATCY	5 cut(s)	475, 854, 877, 1792, 1825
MhlI	GDGCHC	3 cut(s)	99, 1512, 1537
MlsI	TGGCCA	1 cut(s)	1410
MluCI	AATT	8 cut(s)	631, 814, 1322, 1435, 1516, 1693, 1731, 2102
MluNI	TGGCCA	1 cut(s)	1410
MlyI	GAGTC	4 cut(s)	530, 1169, 1717, 1846
MmeI	TCCRAC	2 cut(s)	100, 1705
Mox20I	TGGCCA	1 cut(s)	1410
Mph1103I	ATGCAT	1 cut(s)	656
MroI	TCCGGA	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	1519
MscI	TGGCCA	1 cut(s)	1410
MseI	TTAA	5 cut(s)	201, 459, 647, 1203, 1353
MslI	CAYNNNNRTG	2 cut(s)	649, 1230
Msp20I	TGGCCA	1 cut(s)	1410
MspA1I	CMGCKG	2 cut(s)	238, 1541
MspI	CCGG	3 cut(s)	398, 845, 1252
MspR9I	CCNGG	4 cut(s)	303, 1252, 1389, 1449
MssI	GTTTAAAC	1 cut(s)	1354
Mva1269I	GAATGC	4 cut(s)	259, 387, 556, 1073
MvaI	CCWGG	3 cut(s)	303, 1389, 1449
MvnI	CGCG	2 cut(s)	216, 2047
MwoI	GCNNNNNNNGC	5 cut(s)	22, 103, 421, 913, 1541
NciI	CCSGG	1 cut(s)	1252
NlaIV	GGNNCC	6 cut(s)	333, 618, 856, 879, 1794, 1827
NmuCI	GTSAC	1 cut(s)	1161
NsiI	ATGCAT	1 cut(s)	656
NspI	RCATGY	1 cut(s)	344
NspV	TTCGAA	2 cut(s)	571, 1980
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	2 cut(s)	244, 1873
PctI	GAATGC	4 cut(s)	259, 387, 556, 1073
PdmI	GAANNNNTTC	1 cut(s)	1519
PfeI	GAWTC	3 cut(s)	450, 1031, 1384
PflMI	CCANNNNNTGG	2 cut(s)	1604, 1724
PkrI	GCNGC	6 cut(s)	215, 240, 1120, 1309, 1543, 2062
PleI	GAGTC	4 cut(s)	530, 1168, 1716, 1845
PmeI	GTTTAAAC	1 cut(s)	1354
PpsI	GAGTC	4 cut(s)	530, 1168, 1716, 1845
PpuMI	RGGWCCY	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	301, 1387, 1447
PspFI	CCCAGC	1 cut(s)	1152
PspGI	CCWGG	3 cut(s)	301, 1387, 1447
PspN4I	GGNNCC	6 cut(s)	333, 618, 856, 879, 1794, 1827
PspPI	GGNCC	4 cut(s)	62, 299, 332, 666
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	4 cut(s)	938, 970, 1570, 1602
PstNI	CAGNNNCTG	1 cut(s)	1685
PsuI	RGATCY	5 cut(s)	475, 854, 877, 1792, 1825
PvuII	CAGCTG	2 cut(s)	238, 1541
RsaI	GTAC	5 cut(s)	128, 294, 973, 1762, 2079
RsaNI	GTAC	5 cut(s)	127, 293, 972, 1761, 2078
RseI	CAYNNNNRTG	2 cut(s)	649, 1230
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	201, 459, 647, 1203, 1353
SatI	GCNGC	6 cut(s)	214, 239, 1119, 1308, 1542, 2061
Sau96I	GGNCC	4 cut(s)	62, 299, 332, 666
SchI	GAGTC	4 cut(s)	530, 1169, 1717, 1846
ScrFI	CCNGG	4 cut(s)	303, 1252, 1389, 1449
SduI	GDGCHC	3 cut(s)	99, 1512, 1537
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	3 cut(s)	418, 641, 2047
SfcI	CTRYAG	4 cut(s)	471, 545, 1100, 1686
Sfr274I	CTCGAG	1 cut(s)	98
SfuI	TTCGAA	2 cut(s)	571, 1980
SinI	GGWCC	3 cut(s)	62, 299, 332
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	649, 1230
SmlI	CTYRAG	3 cut(s)	98, 1866, 2030
SmoI	CTYRAG	3 cut(s)	98, 1866, 2030
Sse9I	AATT	8 cut(s)	631, 814, 1322, 1435, 1516, 1693, 1731, 2102
SsiI	CCGC	5 cut(s)	214, 979, 1171, 1704, 2060
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	8 cut(s)	6, 176, 287, 336, 348, 882, 951, 2120
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	301, 1250, 1387, 1447
StyI	CCWWGG	2 cut(s)	859, 1652
TaaI	ACNGT	7 cut(s)	30, 568, 584, 1342, 1363, 1595, 1769
TaiI	ACGT	3 cut(s)	679, 1291, 2117
TaqI	TCGA	7 cut(s)	99, 283, 571, 1128, 1191, 1326, 1980
TasI	AATT	8 cut(s)	631, 814, 1322, 1435, 1516, 1693, 1731, 2102
TatI	WGTACW	3 cut(s)	971, 1760, 2077
TauI	GCSGC	2 cut(s)	216, 2063
TfiI	GAWTC	3 cut(s)	450, 1031, 1384
Tru1I	TTAA	5 cut(s)	201, 459, 647, 1203, 1353
Tru9I	TTAA	5 cut(s)	201, 459, 647, 1203, 1353
TscAI	CASTG	4 cut(s)	1188, 1366, 1686, 2025
TseFI	GTSAC	1 cut(s)	1161
TseI	GCWGC	4 cut(s)	238, 1118, 1307, 1541
Tsp45I	GTSAC	1 cut(s)	1161
TspDTI	ATGAA	9 cut(s)	233, 864, 959, 1001, 1202, 1264, 1763, 1890, 2028
TspGWI	ACGGA	2 cut(s)	83, 1435
TspRI	CASTG	4 cut(s)	1188, 1366, 1686, 2025
Van91I	CCANNNNNTGG	2 cut(s)	1604, 1724
VneI	GTGCAC	1 cut(s)	1533
VpaK11BI	GGWCC	3 cut(s)	62, 299, 332
XapI	RAATTY	2 cut(s)	631, 1516
XceI	RCATGY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	1519
XspI	CTAG	8 cut(s)	6, 176, 287, 336, 348, 882, 951, 2120
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.