Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005853

Physical Location & Seq

Genomic Coordinates Forward (+)

1464211 .. 1469790

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGTAATGGGGAGCCCCGGGTTAAGCAACCGGAATAATGGCCAGCAGCGATTAGGCATTACTGAGCCGATTTCATTGGGCGGTCCCTCGGAGGAGGATGTGATCAAAACCCGTGAGCTTGAGAAGTATTTGCATGATGCTGGATTGTATGAGAGTCAGGAAGAGGCTGTAAGTAGGGAAGAGGTGCTTGGAAGGCTCGATCAGATTGTGAAGATATGGGTTAAGACCATTAGCCGGGCGAAGGGTTTGAACGATGAACTGGTGCATCAAGCAAATGCTAAGATCTTCACGTTTGGTTCATATAGGCTAGGGGTTCATGGCCCTGGTGCAGATATAGACACACTCTGTGTTGGACCCAGACATGCAACTCGAGAAGAAGATTTCTTTGGTGAGCTATACAGGATGCTATCTGAAATGTCTGAAGTAACGGAGTTGCATCCTGTTCCTGATGCCCATGTTCCCATTATGCAGTTCAAGTTTAACGGAGTATCAATTGATCTTCTTTATGCAAAACTATCTCTTTATATTATTCCTGAGGACTTAGATGTATCACAAGATGCAATACTACATGGTGCAGATGAACAGACAGTTCGTAGTCTCAATGGCTGTAGAGTTACAGACCAAATTCTGCGTCTAGTCCCAAGCATTCAGAATTTTCGCACAACACTAAGATGCATGAGGTTATGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTGCAGGATTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCTCGCATATGCCAACTTTACCCGAATGCATTGCCTAATATGCTAGTATCTCGGTTCTTCAGGGTCTATACTCAGTGGCGTTGGCCGAATCCAGTAATGCTCTGTGCTATCGAAGAAGGGTCTCTAGGACTTCCGGTTTGGGATCCCAGAAGAAATCCAAGGGACAGATATCATTTGATGCCTATAATTACTCCAGCTTATCCTTGCATGAACTCTAGCTACAATGTGTCCTCAAGTACTCTGCGTATCATGTTAGAGGAGTTTCAGAGGGGAAATGAAATTTGTGAGTGCTTGCAGGCTATGGAAGCAAATAAGGCTGATTGGGATACCCTTTTTGAGTCGTATGCTTTCTTTGAAGCATATAAGAATTATTTACAGATAGACATCAGTGCAGCAAATGCTGATGGCTTTAGAAAATGGAAAGGCTGGGTTGAGTCCCGTCTCCGTCAACTAACATTGAAGATTGAGAGGAAAACTTATGAAATGCTGCAGTGTCACCCACACCCAGGTGGTTTTCCAGATAAATCCAGACCTTTTCATAGCTCATATTTCATGGGCCTACAACGAAAACAAGGAGTTCCAGTCAAGGAAGGTGAGCACTTTGATTTAAGTAAAGCTGTTGATGACTTCAAGCTTGCTGTCTACCAGTATACATTAAGGGAAATTGGAATGGAGATCCGTGTATCCCATGTAAAACGCAGGGAGATCCCTAATTTTGTATTTCCTGGAGGCGTTCGGCCTTCGCGCCCATCTAAAGTAAGTTGGGTTAGAAAGCGATGTTCAGAACTGGAGGTTTCTGGCAGCAGCACTCAACTAGATAGGTCAGGTGAAGATAGAACTGTTTCAGATGGAGCAGATAGTGGTAGAAAGAGAAAATTGGAGAATGATAATGTAGAGACTGACCATGCCAAGTCTATGCGTCCCTGCGTTGGGGAAGTTTGTGAGGCTAGCCCTCCTTTAGTAATGTCAGCCCATCCTCTGCAAAATATGAGAATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

585

Amino Acids

66.67

Weight (kDa)

7.58

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	19 - 213	5.1e-79	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	87 - 168	9.9e-11	Nucleotidyltransferase domain
PAP_central	PF04928	218 - 365	5.9e-68	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	369 - 427	1.7e-12	Poly(A) polymerase predicted RNA binding domain
PAP_RNA-bind	PF04926	428 - 500	4.4e-06	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17980 AT1G17980
fragaria_vesca	FvH4_5g16820 FvH4_5g16820 FvH4_5g16820 FvH4_5g16820
malus_domestica	MD06G1222200.v1.1 MD09G1233900.v1.1 MD14G1231300.v1.1 MD17G1263100.v1.1
prunus_persica	Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1
pyrus_communis	pycom06g19770 pycom14g19250 pycom17g26340
rosa_chinensis	RchiOBHm_Chr7g0179251
rosa_laevigata	RLG00000005369
rosa_multiflora	Rmu_sc0006939.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274180
rosa_rugosa	Rorug06G0422700 Rorug06G0422800 Rorug06G0422800
rosa_samantha	Rh7AG022000 Rh7BG021900 Rh7CG023200 Rh7DG022500
rosa_wichuraiana	Rw7G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1398, 1406
AccII	CGCG	1 cut(s)	1501
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	4 cut(s)	893, 906, 1426, 1456
AcoI	YGGCCR	2 cut(s)	40, 839
AcsI	RAATTY	3 cut(s)	624, 652, 1035
AcuI	CTGAAG	2 cut(s)	441, 799
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	994
AfiI	CCNNNNNNNGG	5 cut(s)	234, 241, 1262, 1685, 1686
AgsI	TTSAA	6 cut(s)	250, 475, 711, 1112, 1216, 1387
AjnI	CCWGG	3 cut(s)	322, 1261, 1480
AjuI	GAANNNNNNNTTGG	4 cut(s)	171, 203, 369, 401
AleI	CACNNNNGTG	1 cut(s)	1263
AluBI	AGCT	7 cut(s)	118, 394, 953, 975, 1299, 1373, 1390
AluI	AGCT	7 cut(s)	118, 394, 953, 975, 1299, 1373, 1390
Alw21I	GWGCWC	1 cut(s)	1356
Alw26I	GTCTC	4 cut(s)	602, 882, 1202, 1646
AlwI	GGATC	4 cut(s)	893, 906, 1426, 1456
Ama87I	CYCGRG	2 cut(s)	17, 369
AoxI	GGCC	5 cut(s)	40, 319, 839, 1312, 1493
ApeKI	GCWGC	5 cut(s)	46, 1148, 1243, 1557, 1560
ApoI	RAATTY	3 cut(s)	624, 652, 1035
ArsI	GACNNNNNNTTYG	4 cut(s)	616, 648, 876, 908
Asp700I	GAANNNNTTC	1 cut(s)	1597
AspLEI	GCGC	1 cut(s)	1503
AspS9I	GGNCC	4 cut(s)	83, 320, 353, 1312
AsuC2I	CCSGG	3 cut(s)	18, 19, 236
AsuHPI	GGTGA	4 cut(s)	401, 1244, 1361, 1595
AsuNHI	GCTAGC	1 cut(s)	1703
AvaI	CYCGRG	2 cut(s)	17, 369
AvaII	GGWCC	2 cut(s)	83, 353
AxyI	CCTNAGG	1 cut(s)	534
BalI	TGGCCA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	1356
BbvI	GCAGC	5 cut(s)	58, 1160, 1230, 1569, 1572
BccI	CCATC	4 cut(s)	1154, 1513, 1598, 1737
BcgI	CGANNNNNNTGC	2 cut(s)	769, 803
BciT130I	CCWGG	3 cut(s)	324, 1263, 1482
BciVI	GTATCC	2 cut(s)	1075, 1450
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	3 cut(s)	18, 19, 236
BcoDI	GTCTC	4 cut(s)	602, 882, 1202, 1646
BfaI	CTAG	7 cut(s)	308, 635, 800, 881, 972, 1571, 1704
BfmI	CTRYAG	2 cut(s)	607, 1244
BfuI	GTATCC	2 cut(s)	1075, 1450
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	5 cut(s)	47, 1149, 1244, 1558, 1561
BlsI	GCNGC	5 cut(s)	48, 1150, 1245, 1559, 1562
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	6 cut(s)	18, 19, 236, 324, 1263, 1482
Bme18I	GGWCC	2 cut(s)	83, 353
BmeT110I	CYCGRG	2 cut(s)	17, 369
BmgT120I	GGNCC	4 cut(s)	83, 320, 353, 1312
BmiI	GGNNCC	4 cut(s)	14, 85, 355, 900
BmrFI	CCNGG	6 cut(s)	18, 19, 236, 324, 1263, 1482
BmrI	ACTGGG	1 cut(s)	751
BmsI	GCATC	8 cut(s)	127, 274, 393, 439, 445, 547, 662, 924
BmtI	GCTAGC	1 cut(s)	1707
BmuI	ACTGGG	1 cut(s)	751
BpmI	CTGGAG	3 cut(s)	933, 1503, 1565
BpuEI	CTTGAG	2 cut(s)	140, 973
BpuMI	CCSGG	3 cut(s)	18, 19, 236
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	6 cut(s)	16, 17, 87, 322, 914, 1261
BsaWI	WCCGGW	2 cut(s)	30, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	1323, 1353
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 241, 1262, 1685, 1686
Bse1I	ACTGG	6 cut(s)	264, 746, 848, 1337, 1402, 1548
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	746, 785
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	3 cut(s)	324, 1263, 1482
BseDI	CCNNGG	6 cut(s)	16, 17, 87, 322, 914, 1261
BseGI	GGATG	4 cut(s)	103, 408, 436, 1729
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	5 cut(s)	234, 241, 1262, 1685, 1686
BseMI	GCAATG	2 cut(s)	746, 785
BseMII	CTCAG	3 cut(s)	54, 525, 842
BseNI	ACTGG	6 cut(s)	264, 746, 848, 1337, 1402, 1548
BseRI	GAGGAG	2 cut(s)	107, 1028
BseXI	GCAGC	5 cut(s)	58, 1160, 1230, 1569, 1572
BseYI	CCCAGC	1 cut(s)	1182
BsgI	GTGCAG	3 cut(s)	348, 594, 1167
Bsh1236I	CGCG	1 cut(s)	1501
BshFI	GGCC	5 cut(s)	42, 321, 841, 1314, 1495
BsiHKAI	GWGCWC	1 cut(s)	1356
BsiHKCI	CYCGRG	2 cut(s)	17, 369
BsiSI	CCGG	4 cut(s)	18, 31, 235, 890
BslFI	GGGAC	5 cut(s)	69, 623, 932, 1177, 1662
BslI	CCNNNNNNNGG	5 cut(s)	234, 241, 1262, 1685, 1686
BsmAI	GTCTC	4 cut(s)	602, 882, 1202, 1646
BsmBI	CGTCTC	1 cut(s)	1202
BsmFI	GGGAC	5 cut(s)	69, 623, 932, 1177, 1662
BsmI	GAATGC	2 cut(s)	645, 787
BsnI	GGCC	5 cut(s)	42, 321, 841, 1314, 1495
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	2 cut(s)	17, 369
Bsp1286I	GDGCHC	2 cut(s)	17, 1356
Bsp143I	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	5 cut(s)	42, 321, 841, 1314, 1495
BspCNI	CTCAG	3 cut(s)	55, 526, 841
BspFNI	CGCG	1 cut(s)	1501
BspLI	GGNNCC	4 cut(s)	14, 85, 355, 900
BspMAI	CTGCAG	1 cut(s)	1248
BspOI	GCTAGC	1 cut(s)	1707
BspPI	GGATC	4 cut(s)	893, 906, 1426, 1456
BspTNI	GGTCTC	1 cut(s)	882
BsrDI	GCAATG	2 cut(s)	746, 785
BsrI	ACTGG	6 cut(s)	264, 746, 848, 1337, 1402, 1548
BssECI	CCNNGG	6 cut(s)	16, 17, 87, 322, 914, 1261
BssMI	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
BssNAI	GTATAC	1 cut(s)	1407
BssT1I	CCWWGG	1 cut(s)	914
Bst1107I	GTATAC	1 cut(s)	1407
Bst2UI	CCWGG	3 cut(s)	324, 1263, 1482
Bst4CI	ACNGT	2 cut(s)	589, 1597
Bst6I	CTCTTC	2 cut(s)	156, 174
BstAPI	GCANNNNNTGC	1 cut(s)	1154
BstC8I	GCNNGC	6 cut(s)	44, 760, 1049, 1053, 1392, 1705
BstDEI	CTNAG	6 cut(s)	63, 279, 534, 541, 668, 828
BstF5I	GGATG	4 cut(s)	103, 408, 436, 1729
BstFNI	CGCG	1 cut(s)	1501
BstHHI	GCGC	1 cut(s)	1503
BstKTI	GATC	7 cut(s)	105, 202, 285, 499, 901, 1434, 1464
BstMAI	GTCTC	4 cut(s)	602, 882, 1202, 1646
BstMBI	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 796, 1061, 1070, 1154
BstNI	CCWGG	3 cut(s)	324, 1263, 1482
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	6 cut(s)	16, 17, 234, 322, 1261, 1480
BstSFI	CTRYAG	2 cut(s)	607, 1244
BstUI	CGCG	1 cut(s)	1501
BstV1I	GCAGC	5 cut(s)	58, 1160, 1230, 1569, 1572
BstX2I	RGATCY	4 cut(s)	282, 898, 1431, 1461
BstYI	RGATCY	4 cut(s)	282, 898, 1431, 1461
BstZ17I	GTATAC	1 cut(s)	1407
Bsu36I	CCTNAGG	1 cut(s)	534
BsuI	GTATCC	2 cut(s)	1075, 1450
BsuRI	GGCC	5 cut(s)	42, 321, 841, 1314, 1495
BtgZI	GCGATG	1 cut(s)	1546
BtsCI	GGATG	4 cut(s)	103, 408, 436, 1729
BtsI	GCAGTG	1 cut(s)	1253
BtsIMutI	CAGTG	3 cut(s)	836, 1150, 1253
Cac8I	GCNNGC	6 cut(s)	44, 760, 1049, 1053, 1392, 1705
CfoI	GCGC	1 cut(s)	1503
Cfr13I	GGNCC	4 cut(s)	83, 320, 353, 1312
Cfr9I	CCCGGG	1 cut(s)	17
CseI	GACGC	3 cut(s)	620, 683, 1664
Csp6I	GTAC	1 cut(s)	993
CviQI	GTAC	1 cut(s)	993
DdeI	CTNAG	6 cut(s)	63, 279, 534, 541, 668, 828
DpnI	GATC	7 cut(s)	104, 201, 284, 498, 900, 1433, 1463
DpnII	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	2 cut(s)	40, 839
Eam1104I	CTCTTC	2 cut(s)	156, 174
EarI	CTCTTC	2 cut(s)	156, 174
Eco130I	CCWWGG	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	882
Eco32I	GATATC	1 cut(s)	926
Eco47I	GGWCC	2 cut(s)	83, 353
Eco57I	CTGAAG	2 cut(s)	441, 799
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	2 cut(s)	17, 369
EcoRII	CCWGG	3 cut(s)	322, 1261, 1480
EcoRV	GATATC	1 cut(s)	926
EcoT14I	CCWWGG	1 cut(s)	914
EcoT22I	ATGCAT	2 cut(s)	677, 787
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	914
Esp3I	CGTCTC	1 cut(s)	1202
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	5 cut(s)	69, 623, 932, 1177, 1662
FauNDI	CATATG	1 cut(s)	764
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	2 cut(s)	1398, 1406
Fnu4HI	GCNGC	5 cut(s)	47, 1149, 1244, 1558, 1561
FokI	GGATG	4 cut(s)	110, 415, 423, 1716
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	47, 1149, 1244, 1558, 1561
FspBI	CTAG	7 cut(s)	308, 635, 800, 881, 972, 1571, 1704
GlaI	GCGC	1 cut(s)	1502
GluI	GCNGC	5 cut(s)	47, 1149, 1244, 1558, 1561
GsaI	CCCAGC	1 cut(s)	1186
GsuI	CTGGAG	3 cut(s)	933, 1503, 1565
HaeIII	GGCC	5 cut(s)	42, 321, 841, 1314, 1495
HapII	CCGG	4 cut(s)	18, 31, 235, 890
HgaI	GACGC	3 cut(s)	620, 683, 1664
HhaI	GCGC	1 cut(s)	1503
Hin6I	GCGC	1 cut(s)	1501
HinP1I	GCGC	1 cut(s)	1501
HincII	GTYRAC	1 cut(s)	1205
HindII	GTYRAC	1 cut(s)	1205
HindIII	AAGCTT	1 cut(s)	1388
HinfI	GANTC	4 cut(s)	154, 844, 1094, 1190
HpaII	CCGG	4 cut(s)	18, 31, 235, 890
HphI	GGTGA	4 cut(s)	401, 1244, 1361, 1595
Hpy166II	GTNNAC	3 cut(s)	1205, 1399, 1407
Hpy188I	TCNGA	8 cut(s)	91, 204, 412, 421, 651, 1023, 1540, 1603
Hpy188III	TCNNGA	6 cut(s)	158, 371, 446, 533, 1274, 1284
Hpy8I	GTNNAC	3 cut(s)	1205, 1399, 1407
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	5 cut(s)	186, 235, 866, 1340, 1506
HpyCH4III	ACNGT	2 cut(s)	589, 1597
HpyCH4IV	ACGT	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 796, 1061, 1070, 1154
HpyF3I	CTNAG	6 cut(s)	63, 279, 534, 541, 668, 828
HpySE526I	ACGT	1 cut(s)	290
HspAI	GCGC	1 cut(s)	1501
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
LmnI	GCTCC	2 cut(s)	12, 1607
Lsp1109I	GCAGC	5 cut(s)	58, 1160, 1230, 1569, 1572
LweI	GCATC	8 cut(s)	127, 274, 393, 439, 445, 547, 662, 924
MaeI	CTAG	7 cut(s)	308, 635, 800, 881, 972, 1571, 1704
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	3 cut(s)	424, 613, 1250
MalI	GATC	7 cut(s)	104, 201, 284, 498, 900, 1433, 1463
MboI	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	4 cut(s)	282, 898, 1431, 1461
MhlI	GDGCHC	2 cut(s)	17, 1356
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	9 cut(s)	492, 624, 652, 942, 1035, 1123, 1419, 1468, 1631
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	163, 1103, 1199
MmeI	TCCRAC	1 cut(s)	331
Mox20I	TGGCCA	1 cut(s)	42
Mph1103I	ATGCAT	2 cut(s)	677, 787
MroXI	GAANNNNTTC	1 cut(s)	1597
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	5 cut(s)	23, 222, 480, 1364, 1412
MslI	CAYNNNNRTG	2 cut(s)	670, 1263
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	4 cut(s)	18, 31, 235, 890
MspR9I	CCNGG	6 cut(s)	18, 19, 236, 324, 1263, 1482
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	645, 787
MvaI	CCWGG	3 cut(s)	324, 1263, 1482
MvnI	CGCG	1 cut(s)	1501
MwoI	GCNNNNNNNGC	5 cut(s)	193, 796, 1061, 1070, 1154
NciI	CCSGG	3 cut(s)	18, 19, 236
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
NheI	GCTAGC	1 cut(s)	1703
NlaIV	GGNNCC	4 cut(s)	14, 85, 355, 900
NmuCI	GTSAC	1 cut(s)	1250
NsiI	ATGCAT	2 cut(s)	677, 787
NspI	RCATGY	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	1263
PaeR7I	CTCGAG	1 cut(s)	369
PctI	GAATGC	2 cut(s)	645, 787
PdmI	GAANNNNTTC	1 cut(s)	1597
PfeI	GAWTC	1 cut(s)	844
PfoI	TCCNGGA	1 cut(s)	1480
PkrI	GCNGC	5 cut(s)	48, 1150, 1245, 1559, 1562
PleI	GAGTC	3 cut(s)	162, 1102, 1198
PpsI	GAGTC	3 cut(s)	162, 1102, 1198
Psp6I	CCWGG	3 cut(s)	322, 1261, 1480
PspFI	CCCAGC	1 cut(s)	1182
PspGI	CCWGG	3 cut(s)	322, 1261, 1480
PspN4I	GGNNCC	4 cut(s)	14, 85, 355, 900
PspPI	GGNCC	4 cut(s)	83, 320, 353, 1312
PsrI	GAACNNNNNNTAC	2 cut(s)	959, 991
PstI	CTGCAG	1 cut(s)	1248
PsuI	RGATCY	4 cut(s)	282, 898, 1431, 1461
RsaI	GTAC	1 cut(s)	994
RsaNI	GTAC	1 cut(s)	993
RseI	CAYNNNNRTG	2 cut(s)	670, 1263
SaqAI	TTAA	5 cut(s)	23, 222, 480, 1364, 1412
SatI	GCNGC	5 cut(s)	47, 1149, 1244, 1558, 1561
Sau3AI	GATC	7 cut(s)	102, 199, 282, 496, 898, 1431, 1461
Sau96I	GGNCC	4 cut(s)	83, 320, 353, 1312
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	3 cut(s)	163, 1103, 1199
ScrFI	CCNGG	6 cut(s)	18, 19, 236, 324, 1263, 1482
SduI	GDGCHC	2 cut(s)	17, 1356
SfaNI	GCATC	8 cut(s)	127, 274, 393, 439, 445, 547, 662, 924
SfcI	CTRYAG	2 cut(s)	607, 1244
Sfr274I	CTCGAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	83, 353
SlaI	CTCGAG	1 cut(s)	369
SmaI	CCCGGG	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	670, 1263
SmlI	CTYRAG	3 cut(s)	119, 369, 988
SmoI	CTYRAG	3 cut(s)	119, 369, 988
Sse9I	AATT	9 cut(s)	492, 624, 652, 942, 1035, 1123, 1419, 1468, 1631
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	7 cut(s)	308, 635, 800, 881, 972, 1571, 1704
StyD4I	CCNGG	6 cut(s)	16, 17, 234, 322, 1261, 1480
StyI	CCWWGG	1 cut(s)	914
TaaI	ACNGT	2 cut(s)	589, 1597
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	198, 370, 867
TasI	AATT	9 cut(s)	492, 624, 652, 942, 1035, 1123, 1419, 1468, 1631
TatI	WGTACW	1 cut(s)	992
TfiI	GAWTC	1 cut(s)	844
Tru1I	TTAA	5 cut(s)	23, 222, 480, 1364, 1412
Tru9I	TTAA	5 cut(s)	23, 222, 480, 1364, 1412
TscAI	CASTG	3 cut(s)	836, 1150, 1253
TseFI	GTSAC	1 cut(s)	1250
TseI	GCWGC	5 cut(s)	46, 1148, 1243, 1557, 1560
Tsp45I	GTSAC	1 cut(s)	1250
TspGWI	ACGGA	4 cut(s)	443, 498, 1190, 1424
TspMI	CCCGGG	1 cut(s)	17
TspRI	CASTG	3 cut(s)	836, 1150, 1253
VpaK11BI	GGWCC	2 cut(s)	83, 353
XapI	RAATTY	3 cut(s)	624, 652, 1035
XceI	RCATGY	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	369
XmaI	CCCGGG	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	1398, 1406
XmnI	GAANNNNTTC	1 cut(s)	1597
XspI	CTAG	7 cut(s)	308, 635, 800, 881, 972, 1571, 1704
ZrmI	AGTACT	1 cut(s)	994
Zsp2I	ATGCAT	2 cut(s)	677, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.