Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005853

Physical Location & Seq

Genomic Coordinates Forward (+)

32428852 .. 32430987

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1263100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGGGGAACCCTGATGCATTAAGCAATCAAGATAACGGGCGGCGGTTTGGCCTTACGGGGCCCATCTTGCTGGCCGGACCGGCCGAGTCTGATGTGACCAAGACTCGTGAACTGGAAAACTACTTGCAAGATGCTGGATTGTATGAGAGTCAGGAAGAGGCTGTGCGCAGGCAGGAGGTTCTTGGCAGCCTCGACCAGACTGTCAAGGCGTGGGTTAAGAAAGTTAGCAAGGCCAAGGGATTCAATGAGCAACTGGTGGATGAAGCAAATGCTTTGATCGTCACCTTTGGATCGTATCGGCTAGGGGTTCATGGCCCAGGAGCAGATATAGACACACTCTGTGTCGGTCCTAAATATGCAACTCGTCAAGAAGATTTCTTCGGCGAGCTACGTAGGATGCTGTCTGAGATGCCTCAAGTGACAGAGTTGAACCCTGTACCCGATGCTCACGTCCCAGTCATGACATTCAAGTTCAGTGGGGTGGCAATAGATCTTCTTTATGCGCAACTAGCACTCTTGGTTATTCCAGAAGACTTGGATATATTACAAGACTCAGTACTACAGGGTGTAGATGAACAGACGGTTCGTAGTCTTAATGGTTTCCGAGTTACAGACCGAATTCTGCGTTTAATCCCAAGCATTCAGAACTTCTGCACGACTTTGAGATGCATGAGGTTATGGGCAAAGCGTCGTTGTGTTTATTCCAACGTTGCAGGATTTCTTGGTGGTATAAATTGGGCATTGCTTGTTGCTCGCATATGCCAACTTTACCCGAATGCCCTGCCTAATATGCTAGTGTCTCGGTTCTTTAAGATATATACGCAGTGGCACTGGCCAAATCCTGTCATGCTCTGTGCTATTGAAGCTGGGTCTCTTGGACTGCAGGTCTGGGATCCTAGAAGAAACAAAATGGACAGGCTTCATTTGATGCCCATAATTACTCCGGCATATCCCAGCATGAACTCTAGCTACAGCGTGTCTCCGAGTACTAAGTGTATCATGTTAGACGAGTTTCAGAGGGGAAATGATATTTGTAAGGCTATGGAAGCAAACGAGGCCGGTTGGGATACCCTTTTTGAGTCTTCTGCTTTCTTTGAAGCGTATAAGAATTATTTACAGATAGACATCACTGCAGAAAATGATGATGACTTTAGAGCATGGAAAGGCTGGGTTAAGTCCCGTATCCGTCAACTAATGCTGAAGATTGAGAGGCACACATCCGGCAAGCTGCTGTGTCACCCACAACCAGGTGATTTTTCAGACAAATCAAGAGGTTTTCATAGCTCTTTCTTCATGGGTCTACAACGATGTCAAGGAGTTTGTGCCGATGATGGCCAGCGATACTTTGACATAAGAGGAGCAATTGAGGAGTTTAAGCAAGCTGATGTAAACCGTTACACATTATGGAAACCTGGAATGGAGATCTGTGTATCCCATGTAAACCGCAAGAGCATCCCAAATTTTGTATTTCCTGGTGGGGTTCGACCTCCGCGCCCATCTAAAGTAACTTGGGAGAGAAGGCAGGGTTCAGAACCAACGGTTTCTGGAGCATCTGAACCACATAAATTATGTGACGCTAAAACTGATTTAGATGGATCAGATGGCAGGCCGAAGAGAAAGCAGGTGGATAGTAATGTAGAAATTGACTCAAGCCATGCCAAGTCTTTACGTCCCTGTGGTGAAGAATTTCGTGAGGGTAGCCCTTCTATGAGCAGCAGTGTCAATTCATGTTCCATAAAATGTGACAGTATGGATGCAAACAACATTAACTCCGGAAAGACAGGAATCCCAAGAGACATTCCATATCAGAATGATCAGACTGAATCTTTGTCAAGGTGCAATCCACCAATCGATAGTCTACCTGCTGCTGCGAATATATCAAATTCTAAAGAAGCAGAGAAGCTGGCATTGGAGGAGAAGATTACGGCTACAAAGGAGGGCGCATCAGTTGGTACGCCAATAAACTCTAGCAATGGAGCTGCTGGTCCTTCCAATGATTCATACAATGGGCGCGTAGAGGAACTCGTGGATGAATTTGTGGCGCCATCCTCAAACGGAACCTCTTTTCCACCTGCGGCGCAAAGAAGGCCAATCATCAGGTTCAGTTTCTCTACATTCGTCAAGACTAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

712

Amino Acids

79.05

Weight (kDa)

6.28

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	17 - 211	2.3e-75	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	77 - 164	1.2e-09	Nucleotidyltransferase domain
PAP_central	PF04928	216 - 360	6.8e-66	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	364 - 422	7.3e-12	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17980 AT1G17980
fragaria_vesca	FvH4_5g16820 FvH4_5g16820 FvH4_5g16820 FvH4_5g16820
malus_domestica	MD06G1222200.v1.1 MD09G1233900.v1.1 MD14G1231300.v1.1 MD17G1263100.v1.1
prunus_persica	Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1
pyrus_communis	pycom06g19770 pycom14g19250 pycom17g26340
rosa_chinensis	RchiOBHm_Chr7g0179251
rosa_laevigata	RLG00000005369
rosa_multiflora	Rmu_sc0006939.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274180
rosa_rugosa	Rorug06G0422700 Rorug06G0422800 Rorug06G0422800
rosa_samantha	Rh7AG022000 Rh7BG021900 Rh7CG023200 Rh7DG022500
rosa_wichuraiana	Rw7G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1612, 2080
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc16I	TGCGCA	2 cut(s)	167, 504
Acc36I	ACCTGC	4 cut(s)	874, 1612, 1870, 2080
AccB1I	GGYRCC	1 cut(s)	2041
AccI	GTMKAC	2 cut(s)	1300, 1858
AccII	CGCG	2 cut(s)	1492, 2013
AccIII	TCCGGA	1 cut(s)	1772
AciI	CCGC	5 cut(s)	40, 43, 1444, 1490, 2075
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	4 cut(s)	298, 887, 900, 1603
AcoI	YGGCCR	4 cut(s)	72, 81, 833, 1333
AcsI	RAATTY	5 cut(s)	618, 1459, 1685, 1882, 2033
AcuI	CTGAAG	1 cut(s)	1220
AcyI	GRCGYC	1 cut(s)	2042
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	4 cut(s)	438, 558, 988, 1954
AfiI	CCNNNNNNNGG	1 cut(s)	1247
AgsI	TTSAA	5 cut(s)	244, 430, 469, 863, 1097
AhdI	GACNNNNNGTC	1 cut(s)	884
AhlI	ACTAGT	1 cut(s)	2126
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	4 cut(s)	316, 1246, 1411, 1471
AjuI	GAANNNNNNNTTGG	2 cut(s)	1892, 1924
AloI	GAACNNNNNNTCC	2 cut(s)	2050, 2082
AluBI	AGCT	8 cut(s)	388, 866, 969, 1228, 1284, 1382, 1903, 1979
AluI	AGCT	8 cut(s)	388, 866, 969, 1228, 1284, 1382, 1903, 1979
Alw26I	GTCTC	4 cut(s)	804, 876, 984, 1788
AlwI	GGATC	4 cut(s)	298, 887, 900, 1603
Aor13HI	TCCGGA	1 cut(s)	1772
ApaI	GGGCCC	1 cut(s)	63
ApeKI	GCWGC	6 cut(s)	186, 1228, 1713, 1865, 1868, 1979
ApoI	RAATTY	5 cut(s)	618, 1459, 1685, 1882, 2033
ArsI	GACNNNNNNTTYG	2 cut(s)	1810, 1842
Asp700I	GAANNNNTTC	1 cut(s)	1686
AspLEI	GCGC	7 cut(s)	168, 505, 1494, 1943, 2013, 2044, 2080
AspS9I	GGNCC	6 cut(s)	59, 60, 77, 314, 347, 1985
AsuHPI	GGTGA	4 cut(s)	274, 1229, 1262, 1691
AvaII	GGWCC	3 cut(s)	77, 347, 1985
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	2 cut(s)	835, 1335
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	2041
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	2 cut(s)	105, 2024
BbsI	GAAGAC	2 cut(s)	537, 1074
BbvI	GCAGC	6 cut(s)	198, 1215, 1725, 1852, 1855, 1966
BccI	CCATC	6 cut(s)	71, 1325, 1504, 1586, 1595, 2053
BceAI	ACGGC	1 cut(s)	1941
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	4 cut(s)	318, 1248, 1413, 1473
BciVI	GTATCC	3 cut(s)	1060, 1193, 1441
BclI	TGATCA	1 cut(s)	1813
BcoDI	GTCTC	4 cut(s)	804, 876, 984, 1788
BcuI	ACTAGT	1 cut(s)	2126
BfaI	CTAG	7 cut(s)	302, 509, 794, 897, 966, 1968, 2127
BfmI	CTRYAG	4 cut(s)	560, 881, 970, 1131
BfoI	RGCGCY	1 cut(s)	2045
BfuAI	ACCTGC	4 cut(s)	874, 1612, 1870, 2080
BfuI	GTATCC	3 cut(s)	1060, 1193, 1441
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	2 cut(s)	490, 1422
BisI	GCNGC	8 cut(s)	41, 187, 1229, 1714, 1866, 1869, 1980, 2076
BlsI	GCNGC	8 cut(s)	42, 188, 1230, 1715, 1867, 1870, 1981, 2077
BmcAI	AGTACT	2 cut(s)	558, 988
Bme1390I	CCNGG	4 cut(s)	318, 1248, 1413, 1473
Bme18I	GGWCC	3 cut(s)	77, 347, 1985
BmeRI	GACNNNNNGTC	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	6 cut(s)	59, 60, 77, 314, 347, 1985
BmiI	GGNNCC	6 cut(s)	8, 60, 61, 894, 2043, 2059
BmrFI	CCNGG	4 cut(s)	318, 1248, 1413, 1473
BmrI	ACTGGG	1 cut(s)	449
BmuI	ACTGGG	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	537, 1074
BpmI	CTGGAG	1 cut(s)	1566
BpuEI	CTTGAG	2 cut(s)	399, 1633
Bsa29I	ATCGAT	1 cut(s)	1851
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	1124
BsaHI	GRCGYC	1 cut(s)	2042
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	234, 316
BsaWI	WCCGGW	1 cut(s)	1772
BsaXI	ACNNNNNCTCC	2 cut(s)	1754, 1784
Bsc4I	CCNNNNNNNGG	1 cut(s)	1247
Bse118I	RCCGGY	2 cut(s)	79, 1058
Bse1I	ACTGG	4 cut(s)	117, 258, 455, 836
Bse3DI	GCAATG	2 cut(s)	740, 1978
Bse8I	GATNNNNATC	1 cut(s)	1124
BseAI	TCCGGA	1 cut(s)	1772
BseBI	CCWGG	4 cut(s)	318, 1248, 1413, 1473
BseCI	ATCGAT	1 cut(s)	1851
BseDI	CCNNGG	2 cut(s)	234, 316
BseGI	GGATG	7 cut(s)	265, 402, 1217, 1452, 1759, 2035, 2045
BseJI	GATNNNNATC	1 cut(s)	1124
BseLI	CCNNNNNNNGG	1 cut(s)	1247
BseMI	GCAATG	2 cut(s)	740, 1978
BseMII	CTCAG	2 cut(s)	396, 567
BseNI	ACTGG	4 cut(s)	117, 258, 455, 836
BseRI	GAGGAG	3 cut(s)	1371, 1382, 1928
BseSI	GKGCMC	1 cut(s)	63
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	6 cut(s)	198, 1215, 1725, 1852, 1855, 1966
BseYI	CCCAGC	3 cut(s)	866, 953, 1167
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	2 cut(s)	1492, 2013
Bsh1285I	CGRYCG	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	2041
BshVI	ATCGAT	1 cut(s)	1851
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	6 cut(s)	75, 80, 944, 1059, 1221, 1773
BslFI	GGGAC	3 cut(s)	437, 1162, 1656
BslI	CCNNNNNNNGG	1 cut(s)	1247
BsmAI	GTCTC	4 cut(s)	804, 876, 984, 1788
BsmFI	GGGAC	3 cut(s)	437, 1162, 1656
BsmI	GAATGC	2 cut(s)	639, 781
Bso31I	GGTCTC	1 cut(s)	876
Bsp120I	GGGCCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	1772
Bsp143I	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
BspACI	CCGC	5 cut(s)	40, 43, 1444, 1490, 2075
BspCNI	CTCAG	2 cut(s)	397, 566
BspDI	ATCGAT	1 cut(s)	1851
BspEI	TCCGGA	1 cut(s)	1772
BspFNI	CGCG	2 cut(s)	1492, 2013
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	6 cut(s)	8, 60, 61, 894, 2043, 2059
BspMAI	CTGCAG	2 cut(s)	885, 1135
BspMI	ACCTGC	4 cut(s)	874, 1612, 1870, 2080
BspPI	GGATC	4 cut(s)	298, 887, 900, 1603
BspT107I	GGYRCC	1 cut(s)	2041
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	2 cut(s)	740, 1978
BsrFI	RCCGGY	2 cut(s)	79, 1058
BsrI	ACTGG	4 cut(s)	117, 258, 455, 836
BssAI	RCCGGY	2 cut(s)	79, 1058
BssECI	CCNNGG	2 cut(s)	234, 316
BssMI	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
BssNI	GRCGYC	1 cut(s)	2042
BssSI	CACGAG	2 cut(s)	105, 2024
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	2 cut(s)	105, 2024
Bst2UI	CCWGG	4 cut(s)	318, 1248, 1413, 1473
Bst4CI	ACNGT	5 cut(s)	202, 583, 1394, 1540, 1748
Bst6I	CTCTTC	2 cut(s)	150, 1607
BstACI	GRCGYC	1 cut(s)	2042
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	9 cut(s)	72, 170, 386, 754, 1226, 1337, 1380, 1607, 1905
BstDEI	CTNAG	3 cut(s)	405, 553, 990
BstF5I	GGATG	7 cut(s)	265, 402, 1217, 1452, 1759, 2035, 2045
BstFNI	CGCG	2 cut(s)	1492, 2013
BstH2I	RGCGCY	1 cut(s)	2045
BstHHI	GCGC	7 cut(s)	168, 505, 1494, 1943, 2013, 2044, 2080
BstKTI	GATC	7 cut(s)	279, 293, 493, 895, 1425, 1598, 1816
BstMAI	GTCTC	4 cut(s)	804, 876, 984, 1788
BstMBI	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	8 cut(s)	67, 80, 509, 790, 863, 1046, 1055, 2086
BstNI	CCWGG	4 cut(s)	318, 1248, 1413, 1473
BstSCI	CCNGG	4 cut(s)	316, 1246, 1411, 1471
BstSFI	CTRYAG	4 cut(s)	560, 881, 970, 1131
BstSLI	GKGCMC	1 cut(s)	63
BstSNI	TACGTA	1 cut(s)	392
BstUI	CGCG	2 cut(s)	1492, 2013
BstV1I	GCAGC	6 cut(s)	198, 1215, 1725, 1852, 1855, 1966
BstV2I	GAAGAC	2 cut(s)	537, 1074
BstX2I	RGATCY	3 cut(s)	490, 892, 1422
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	3 cut(s)	490, 892, 1422
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	1851
BsuI	GTATCC	3 cut(s)	1060, 1193, 1441
BsuTUI	ATCGAT	1 cut(s)	1851
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	7 cut(s)	265, 402, 1217, 1452, 1759, 2035, 2045
BtsI	GCAGTG	3 cut(s)	830, 1128, 1723
BtsIMutI	CAGTG	5 cut(s)	481, 829, 830, 1128, 1723
BveI	ACCTGC	4 cut(s)	874, 1612, 1870, 2080
Cac8I	GCNNGC	9 cut(s)	72, 170, 386, 754, 1226, 1337, 1380, 1607, 1905
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	7 cut(s)	168, 505, 1494, 1943, 2013, 2044, 2080
Cfr10I	RCCGGY	2 cut(s)	79, 1058
Cfr13I	GGNCC	6 cut(s)	59, 60, 77, 314, 347, 1985
ClaI	ATCGAT	1 cut(s)	1851
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	2 cut(s)	677, 1583
CsiI	ACCWGGT	1 cut(s)	1246
Csp6I	GTAC	4 cut(s)	437, 557, 987, 1953
CspCI	CAANNNNNGTGG	3 cut(s)	457, 492, 2110
CspI	CGGWCCG	1 cut(s)	77
CviQI	GTAC	4 cut(s)	437, 557, 987, 1953
DdeI	CTNAG	3 cut(s)	405, 553, 990
DinI	GGCGCC	1 cut(s)	2043
DpnI	GATC	7 cut(s)	278, 292, 492, 894, 1424, 1597, 1815
DpnII	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
DraIII	CACNNNGTG	1 cut(s)	341
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	884
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	4 cut(s)	72, 81, 833, 1333
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	150, 1607
Eam1105I	GACNNNNNGTC	1 cut(s)	884
EarI	CTCTTC	2 cut(s)	150, 1607
EclXI	CGGCCG	1 cut(s)	81
Eco105I	TACGTA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	3 cut(s)	77, 347, 1985
Eco52I	CGGCCG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	1220
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	4 cut(s)	316, 1246, 1411, 1471
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	2 cut(s)	19, 671
EcoT38I	GRGCYC	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	2043
EheI	GGCGCC	1 cut(s)	2043
ErhI	CCWWGG	1 cut(s)	234
FaqI	GGGAC	3 cut(s)	437, 1162, 1656
FauNDI	CATATG	1 cut(s)	758
FbaI	TGATCA	1 cut(s)	1813
FblI	GTMKAC	2 cut(s)	1300, 1858
Fnu4HI	GCNGC	8 cut(s)	41, 187, 1229, 1714, 1866, 1869, 1980, 2076
FokI	GGATG	7 cut(s)	272, 409, 1204, 1439, 1766, 2032, 2042
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	8 cut(s)	41, 187, 1229, 1714, 1866, 1869, 1980, 2076
FspBI	CTAG	7 cut(s)	302, 509, 794, 897, 966, 1968, 2127
FspI	TGCGCA	2 cut(s)	167, 504
GlaI	GCGC	7 cut(s)	167, 504, 1493, 1942, 2012, 2043, 2079
GluI	GCNGC	8 cut(s)	41, 187, 1229, 1714, 1866, 1869, 1980, 2076
GsaI	CCCAGC	3 cut(s)	870, 957, 1171
GsuI	CTGGAG	1 cut(s)	1566
HaeII	RGCGCY	1 cut(s)	2045
HapII	CCGG	6 cut(s)	75, 80, 944, 1059, 1221, 1773
HgaI	GACGC	2 cut(s)	677, 1583
HhaI	GCGC	7 cut(s)	168, 505, 1494, 1943, 2013, 2044, 2080
Hin1I	GRCGYC	1 cut(s)	2042
Hin6I	GCGC	7 cut(s)	166, 503, 1492, 1941, 2011, 2042, 2078
HinP1I	GCGC	7 cut(s)	166, 503, 1492, 1941, 2011, 2042, 2078
HincII	GTYRAC	1 cut(s)	1190
HindII	GTYRAC	1 cut(s)	1190
HpaII	CCGG	6 cut(s)	75, 80, 944, 1059, 1221, 1773
HphI	GGTGA	4 cut(s)	274, 1229, 1262, 1691
Hpy166II	GTNNAC	6 cut(s)	110, 1190, 1301, 1390, 1441, 1859
Hpy8I	GTNNAC	6 cut(s)	110, 1190, 1301, 1390, 1441, 1859
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	4 cut(s)	1512, 1713, 1998, 2079
HpyCH4III	ACNGT	5 cut(s)	202, 583, 1394, 1540, 1748
HpyCH4IV	ACGT	4 cut(s)	391, 450, 708, 1669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	67, 80, 509, 790, 863, 1046, 1055, 2086
HpyF3I	CTNAG	3 cut(s)	405, 553, 990
HpySE526I	ACGT	4 cut(s)	391, 450, 708, 1669
Hsp92I	GRCGYC	1 cut(s)	2042
HspAI	GCGC	7 cut(s)	166, 503, 1492, 1941, 2011, 2042, 2078
KasI	GGCGCC	1 cut(s)	2041
Kpn2I	TCCGGA	1 cut(s)	1772
Ksp22I	TGATCA	1 cut(s)	1813
Kzo9I	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
LmnI	GCTCC	4 cut(s)	320, 1358, 1547, 1976
Lsp1109I	GCAGC	6 cut(s)	198, 1215, 1725, 1852, 1855, 1966
MabI	ACCWGGT	1 cut(s)	1246
MaeI	CTAG	7 cut(s)	302, 509, 794, 897, 966, 1968, 2127
MaeII	ACGT	4 cut(s)	391, 450, 708, 1669
MaeIII	GTNAC	9 cut(s)	94, 280, 418, 607, 1235, 1394, 1504, 1571, 1742
MalI	GATC	7 cut(s)	278, 292, 492, 894, 1424, 1597, 1815
MboI	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
MfeI	CAATTG	1 cut(s)	1362
MflI	RGATCY	3 cut(s)	490, 892, 1422
MhlI	GDGCHC	1 cut(s)	63
MlsI	TGGCCA	2 cut(s)	835, 1335
MluNI	TGGCCA	2 cut(s)	835, 1335
Mly113I	GGCGCC	1 cut(s)	2042
MlyI	GAGTC	6 cut(s)	95, 97, 157, 545, 1088, 1640
MmeI	TCCRAC	1 cut(s)	729
Mox20I	TGGCCA	2 cut(s)	835, 1335
Mph1103I	ATGCAT	2 cut(s)	19, 671
MroI	TCCGGA	1 cut(s)	1772
MroXI	GAANNNNTTC	1 cut(s)	1686
MscI	TGGCCA	2 cut(s)	835, 1335
MseI	TTAA	8 cut(s)	20, 216, 594, 629, 810, 1173, 1374, 1767
Msp20I	TGGCCA	2 cut(s)	835, 1335
MspI	CCGG	6 cut(s)	75, 80, 944, 1059, 1221, 1773
MspR9I	CCNGG	4 cut(s)	318, 1248, 1413, 1473
MunI	CAATTG	1 cut(s)	1362
Mva1269I	GAATGC	2 cut(s)	639, 781
MvaI	CCWGG	4 cut(s)	318, 1248, 1413, 1473
MvnI	CGCG	2 cut(s)	1492, 2013
MwoI	GCNNNNNNNGC	8 cut(s)	67, 80, 509, 790, 863, 1046, 1055, 2086
NarI	GGCGCC	1 cut(s)	2042
NdeI	CATATG	1 cut(s)	758
NdeII	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
NlaIV	GGNNCC	6 cut(s)	8, 60, 61, 894, 2043, 2059
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	6 cut(s)	94, 280, 418, 1235, 1571, 1742
NsbI	TGCGCA	2 cut(s)	167, 504
NsiI	ATGCAT	2 cut(s)	19, 671
PagI	TCATGA	1 cut(s)	459
PaqCI	CACCTGC	2 cut(s)	1612, 2080
PctI	GAATGC	2 cut(s)	639, 781
PdmI	GAANNNNTTC	1 cut(s)	1686
PfeI	GAWTC	4 cut(s)	240, 1785, 1823, 1997
PkrI	GCNGC	8 cut(s)	42, 188, 1230, 1715, 1867, 1870, 1981, 2077
PleI	GAGTC	6 cut(s)	94, 97, 156, 545, 1087, 1640
PluTI	GGCGCC	1 cut(s)	2045
PpsI	GAGTC	6 cut(s)	94, 97, 156, 545, 1087, 1640
Ppu21I	YACGTR	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	4 cut(s)	316, 1246, 1411, 1471
PspFI	CCCAGC	3 cut(s)	866, 953, 1167
PspGI	CCWGG	4 cut(s)	316, 1246, 1411, 1471
PspN4I	GGNNCC	6 cut(s)	8, 60, 61, 894, 2043, 2059
PspOMI	GGGCCC	1 cut(s)	59
PspPI	GGNCC	6 cut(s)	59, 60, 77, 314, 347, 1985
PsrI	GAACNNNNNNTAC	2 cut(s)	953, 985
PstI	CTGCAG	2 cut(s)	885, 1135
PsuI	RGATCY	3 cut(s)	490, 892, 1422
RsaI	GTAC	4 cut(s)	438, 558, 988, 1954
RsaNI	GTAC	4 cut(s)	437, 557, 987, 1953
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SaqAI	TTAA	8 cut(s)	20, 216, 594, 629, 810, 1173, 1374, 1767
SatI	GCNGC	8 cut(s)	41, 187, 1229, 1714, 1866, 1869, 1980, 2076
Sau3AI	GATC	7 cut(s)	276, 290, 490, 892, 1422, 1595, 1813
Sau96I	GGNCC	6 cut(s)	59, 60, 77, 314, 347, 1985
ScaI	AGTACT	2 cut(s)	558, 988
SchI	GAGTC	6 cut(s)	95, 97, 157, 545, 1088, 1640
ScrFI	CCNGG	4 cut(s)	318, 1248, 1413, 1473
SduI	GDGCHC	1 cut(s)	63
SexAI	ACCWGGT	1 cut(s)	1246
SfcI	CTRYAG	4 cut(s)	560, 881, 970, 1131
SfiI	GGCCNNNNNGGCC	1 cut(s)	80
SfoI	GGCGCC	1 cut(s)	2043
SinI	GGWCC	3 cut(s)	77, 347, 1985
SmlI	CTYRAG	2 cut(s)	414, 1648
SmoI	CTYRAG	2 cut(s)	414, 1648
SnaBI	TACGTA	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	2126
SsiI	CCGC	5 cut(s)	40, 43, 1444, 1490, 2075
SspDI	GGCGCC	1 cut(s)	2041
SspMI	CTAG	7 cut(s)	302, 509, 794, 897, 966, 1968, 2127
StyD4I	CCNGG	4 cut(s)	316, 1246, 1411, 1471
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	5 cut(s)	202, 583, 1394, 1540, 1748
TaiI	ACGT	4 cut(s)	394, 453, 711, 1672
TaqI	TCGA	3 cut(s)	192, 1483, 1851
TaqII	GACCGA	2 cut(s)	335, 630
TatI	WGTACW	2 cut(s)	556, 986
TauI	GCSGC	2 cut(s)	43, 2078
TfiI	GAWTC	4 cut(s)	240, 1785, 1823, 1997
Tru1I	TTAA	8 cut(s)	20, 216, 594, 629, 810, 1173, 1374, 1767
Tru9I	TTAA	8 cut(s)	20, 216, 594, 629, 810, 1173, 1374, 1767
TscAI	CASTG	5 cut(s)	481, 830, 836, 1135, 1723
TseFI	GTSAC	6 cut(s)	94, 280, 418, 1235, 1571, 1742
TseI	GCWGC	6 cut(s)	186, 1228, 1713, 1865, 1868, 1979
Tsp45I	GTSAC	6 cut(s)	94, 280, 418, 1235, 1571, 1742
TspGWI	ACGGA	2 cut(s)	1175, 2070
TspRI	CASTG	5 cut(s)	481, 830, 836, 1135, 1723
VpaK11BI	GGWCC	3 cut(s)	77, 347, 1985
XapI	RAATTY	5 cut(s)	618, 1459, 1685, 1882, 2033
XmiI	GTMKAC	2 cut(s)	1300, 1858
XmnI	GAANNNNTTC	1 cut(s)	1686
XspI	CTAG	7 cut(s)	302, 509, 794, 897, 966, 1968, 2127
ZrmI	AGTACT	2 cut(s)	558, 988
Zsp2I	ATGCAT	2 cut(s)	19, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.