Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005853

Physical Location & Seq

Genomic Coordinates Reverse (-)

23085556 .. 23090247

Gene Structure 4692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGATGTCGATCAAAACTCGAGAACTCGAAAAGTATTTGCAAGATGCTGGATTGTATGAGAGTCAGGAAGAGGCTGTGGGTAGGGAGGAGGTTCTTGGCAGGCTAGACCAGATTGTGAAGACGTGGGTTAAAACAATTAGCCGGGCGAAGGGCTTGAATGAGCAACTGGTGCATGAAGCAAATGCTAAGATTTTCACCTTTGGTTCATATCGGCTAGGGGTTCATGGCCCTGGAGCAGATATAGACACACTCTGTGTTGGACCTAGACATGCAACTCGAGAAGGAGATTTCTTTGGCGAACTTCATAGGATGCTGTCTGAGATGTCTGAAGTGACAGAGTTGCATCCTGTTCCTGATGCTCACGTCCCTGTTATGAAATTCAAGTTCAGTGGGGTTTCAATAGATCTTCTTTATGCACAACTAGCACTTTGGGTTGTTCCTGAAGACTTGGATATATCACAAGACTCAATACTACAGAATGCAGATGAACAGACAGTTCGTAGTCTCAACGGCTGTAGAGTAACAGACCAAATTCTGCGTTTAGTCCCTAACATTCAGAGTTTCCGCACAACATTGAGATGCATGAGGTTATGGGCAAAGCATCGTGGTGTTTATTCAAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCAATTCTTGTTGCTCGCATATGCCAACTTTACCCGAATGCACTGCCTAATATGCTAGTTTCTCGGTTCTTCAGGGTATATACTCAGTGGCGTTGGCCAAATCCAGTCATGCTTTGTGCTATTGAAGATGGGTCTCTTCGACTTCAGGTTTGGGATCCTAGAAGATATATAAAGGACACATATCATTTGATGCCTATAATTACTCCGGCTTATCCCAGCATGAACTCTAGTTACAATGTGTCTGCAAGTACTTTGCGTATCATGTTAGAGGAGTTTCAGAGGGGTAATGAAATTTGTGAGGCTATGGAAGCAAATAAGGCTGATTGGGATACCCTTTTTGAGTTTTATGCTTTCTTTGAAGCGTACAAGAATTATTTACAGATAGACATCAGTGCAGAAAATGCTGATGACTTTAGACAATGGAAAGGTTGGGTTGAGTCTCGTCTCCGTCAACTAACCCTGAAGATTGAGAAGTACACAAATGACATGCTGCAGTGTCACCCACATCCAGGTGATTTTTCAGACAGATCGAGACCTTTTCATAGTTCTTTCTTTATGGGCCTGCAACGAAAACAAGGAGTTCCAGTCACTGAAGGCGAACAGTTTGACATAAGGGGAATTGTTGAGGAATTTAAGAATGCTGTCAACGTTTACACATTATTGAAGACTGGAATGGCGATCCGTGTATCCCATGTAAAACGCAGGAACATTCCTAATTTTGTGTTTCCTGGTGGTGTTCGACCTTTGCGCCCATCTAAAGTTACTTGGGACAGCAGGCGGAGTTCAGAACTGAAGGCTTCTGGTGATGCCCAAGCAGAGAAATCGTGTGAAGGAAATGGATCAGATAGTGGACAGAAGAGAAAGCGGGTGGATGATAATTTAGAGACTGACTCAAGGGATGCCAAGTCTTTACGTCTCTGCAGTGGGGAAGGTAAAGCTGATTTAGATGGATCAGACAGTGGACAGAAGAGAAAGCGGGTGGATGATAATGTAGAGACTGACTCAAGGCATGCCAAGTCTTTACATCTCTGCAGCGAGGAAGTTCGTGAGGCTAGCCCTCCTATCAGCAATGTCAGTTCGCGTTCCACAAAATGTGACAGTATCGATGCAAACAAAAACCACAATAATAACGTGAAATTTAGCATAGGGAAGATGGAAAACCCTGCAGACATTCCTTGTCAGAATGGTCAGACTGAAGTATCATTGAGGTACAATCCACCAGTCGATAGTCTATCTTCTGCTGTGAATACATCAAATTGTAAAGAAGGTGCACTGGAGAAGATTATGGTCGGTCCATATGTTTCCCACCAAGCTTTGCCAGAAGTAGATGAGCTTGAAGATGATTTGGAATACAGACATCTAGTGAAAGACTTATCAGGAAACATGAAAGGCAGTCAAATGGAGGCTTCGAAGGAGAGCGTGTCAGTTGCAACACCAGTAAATTATAGCAACGGAGCTGGTCCTTCCACCGATTTATATAATGGGGGATTAGAGGAACTTGAGCCTGCTGAACTTATGGCGCCACTCTCAAACGGAACCCCTTCTCCGCCTTTGGCTCAGAGAAAGCCGATCATCAGGTTGAATTTCACTTCATTGGCCAAAGCTGCCGGTAAAAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0022414 GO:0031123 GO:0031124 GO:0031347 GO:0031348 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045824 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048449 GO:0048451 GO:0048465 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0070013 GO:0070566 GO:0071704 GO:0080134 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

758

Amino Acids

85.06

Weight (kDa)

6.16

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	5 - 182	2.1e-73	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	58 - 136	2.6e-10	Nucleotidyltransferase domain
PAP_central	PF04928	187 - 331	1.9e-68	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	335 - 393	1.2e-12	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17980 AT1G17980
fragaria_vesca	FvH4_5g16820 FvH4_5g16820 FvH4_5g16820 FvH4_5g16820
malus_domestica	MD06G1222200.v1.1 MD09G1233900.v1.1 MD14G1231300.v1.1 MD17G1263100.v1.1
prunus_persica	Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1 Prupe.5G226600_v2.0.a1
pyrus_communis	pycom06g19770 pycom14g19250 pycom17g26340
rosa_chinensis	RchiOBHm_Chr7g0179251
rosa_laevigata	RLG00000005369
rosa_multiflora	Rmu_sc0006939.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274180
rosa_rugosa	Rorug06G0422700 Rorug06G0422800 Rorug06G0422800
rosa_samantha	Rh7AG022000 Rh7BG021900 Rh7CG023200 Rh7DG022500
rosa_wichuraiana	Rw7G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2170
AccII	CGCG	1 cut(s)	1732
AciI	CCGC	5 cut(s)	565, 1429, 1516, 1627, 2198
AclI	AACGTT	1 cut(s)	1299
AclWI	GGATC	5 cut(s)	800, 813, 1324, 1498, 1609
AcoI	YGGCCR	2 cut(s)	746, 2247
AcsI	RAATTY	6 cut(s)	377, 531, 942, 1280, 1787, 2233
AcuI	CTGAAG	8 cut(s)	348, 462, 706, 779, 1133, 1263, 1463, 1866
AcyI	GRCGYC	1 cut(s)	2171
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	901, 1016, 1127, 1862
AfiI	CCNNNNNNNGG	2 cut(s)	148, 1160
AgsI	TTSAA	9 cut(s)	157, 382, 399, 618, 776, 1010, 1315, 1988, 2233
AjiI	CACGTC	2 cut(s)	123, 364
AjnI	CCWGG	3 cut(s)	229, 1159, 1378
AloI	GAACNNNNNNTCC	2 cut(s)	2179, 2211
AluBI	AGCT	6 cut(s)	1589, 1964, 1984, 2108, 2255, 2268
AluI	AGCT	6 cut(s)	1589, 1964, 1984, 2108, 2255, 2268
Alw21I	GWGCWC	1 cut(s)	1924
Alw26I	GTCTC	8 cut(s)	509, 789, 1095, 1100, 1177, 1529, 1571, 1640
Alw44I	GTGCAC	1 cut(s)	1920
AlwI	GGATC	5 cut(s)	800, 813, 1324, 1498, 1609
AlwNI	CAGNNNCTG	1 cut(s)	1241
Ama87I	CYCGRG	2 cut(s)	18, 276
AoxI	GGCC	4 cut(s)	226, 746, 1210, 2247
ApaLI	GTGCAC	1 cut(s)	1920
ApeKI	GCWGC	3 cut(s)	1141, 1683, 2255
ApoI	RAATTY	6 cut(s)	377, 531, 942, 1280, 1787, 2233
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
Asp700I	GAANNNNTTC	1 cut(s)	2191
AspLEI	GCGC	2 cut(s)	1401, 2173
AspS9I	GGNCC	5 cut(s)	227, 260, 1210, 1943, 2111
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	4 cut(s)	187, 1142, 1175, 1466
AsuII	TTCGAA	1 cut(s)	2060
AsuNHI	GCTAGC	1 cut(s)	1703
AvaI	CYCGRG	2 cut(s)	18, 276
AvaII	GGWCC	3 cut(s)	260, 1943, 2111
BaeGI	GKGCMC	1 cut(s)	1924
BaeI	ACNNNNGTAYC	2 cut(s)	1833, 1866
BalI	TGGCCA	2 cut(s)	748, 2249
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	2170
BbsI	GAAGAC	3 cut(s)	125, 450, 1322
Bbv12I	GWGCWC	1 cut(s)	1924
BbvI	GCAGC	3 cut(s)	1128, 1695, 2242
BccI	CCATC	4 cut(s)	773, 1411, 1592, 1798
BceAI	ACGGC	1 cut(s)	526
BcgI	CGANNNNNNTGC	4 cut(s)	676, 710, 1455, 1489
BciT130I	CCWGG	3 cut(s)	231, 1161, 1380
BciVI	GTATCC	2 cut(s)	973, 1348
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	8 cut(s)	509, 789, 1095, 1100, 1177, 1529, 1571, 1640
BfaI	CTAG	9 cut(s)	104, 215, 264, 422, 707, 810, 879, 1704, 2012
BfmI	CTRYAG	6 cut(s)	473, 514, 1142, 1570, 1681, 1815
BfoI	RGCGCY	1 cut(s)	2174
BfuI	GTATCC	2 cut(s)	973, 1348
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	3 cut(s)	1142, 1684, 2256
BlsI	GCNGC	3 cut(s)	1143, 1685, 2257
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	4 cut(s)	143, 231, 1161, 1380
Bme18I	GGWCC	3 cut(s)	260, 1943, 2111
BmeT110I	CYCGRG	2 cut(s)	18, 276
BmgBI	CACGTC	2 cut(s)	123, 364
BmgT120I	GGNCC	5 cut(s)	227, 260, 1210, 1943, 2111
BmiI	GGNNCC	3 cut(s)	807, 2172, 2188
BmrFI	CCNGG	4 cut(s)	143, 231, 1161, 1380
BmrI	ACTGGG	1 cut(s)	658
BmtI	GCTAGC	1 cut(s)	1707
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	3 cut(s)	125, 450, 1322
BplI	GAGNNNNNCTC	4 cut(s)	1526, 1558, 1637, 1669
BpmI	CTGGAG	2 cut(s)	252, 1946
Bpu14I	TTCGAA	1 cut(s)	2060
BpuEI	CTTGAG	3 cut(s)	1528, 1639, 2171
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	1755
BsaBI	GATNNNNATC	2 cut(s)	8, 1037
BsaHI	GRCGYC	1 cut(s)	2171
BsaI	GGTCTC	2 cut(s)	789, 1177
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	6 cut(s)	1221, 1251, 2057, 2087, 2179, 2209
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 1160
Bse118I	RCCGGY	1 cut(s)	2258
Bse1I	ACTGG	8 cut(s)	171, 653, 755, 1235, 1324, 1871, 1929, 2087
Bse3DI	GCAATG	1 cut(s)	1726
Bse8I	GATNNNNATC	2 cut(s)	8, 1037
BseBI	CCWGG	3 cut(s)	231, 1161, 1380
BseCI	ATCGAT	1 cut(s)	1755
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	6 cut(s)	315, 343, 1156, 1528, 1555, 1639
BseJI	GATNNNNATC	2 cut(s)	8, 1037
BseLI	CCNNNNNNNGG	2 cut(s)	148, 1160
BseMI	GCAATG	1 cut(s)	1726
BseMII	CTCAG	3 cut(s)	309, 749, 2222
BseNI	ACTGG	8 cut(s)	171, 653, 755, 1235, 1324, 1871, 1929, 2087
BseRI	GAGGAG	2 cut(s)	101, 935
BseSI	GKGCMC	1 cut(s)	1924
BseXI	GCAGC	3 cut(s)	1128, 1695, 2242
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	1 cut(s)	1732
BshFI	GGCC	4 cut(s)	228, 748, 1212, 2249
BshNI	GGYRCC	1 cut(s)	2170
BshVI	ATCGAT	1 cut(s)	1755
BsiHKAI	GWGCWC	1 cut(s)	1924
BsiHKCI	CYCGRG	2 cut(s)	18, 276
BsiSI	CCGG	3 cut(s)	142, 857, 2259
BslFI	GGGAC	3 cut(s)	350, 530, 1433
BslI	CCNNNNNNNGG	2 cut(s)	148, 1160
BsmAI	GTCTC	8 cut(s)	509, 789, 1095, 1100, 1177, 1529, 1571, 1640
BsmBI	CGTCTC	2 cut(s)	1100, 1571
BsmFI	GGGAC	3 cut(s)	350, 530, 1433
BsmI	GAATGC	3 cut(s)	484, 694, 1294
BsnI	GGCC	4 cut(s)	228, 748, 1212, 2249
Bso31I	GGTCTC	2 cut(s)	789, 1177
BsoBI	CYCGRG	2 cut(s)	18, 276
Bsp119I	TTCGAA	1 cut(s)	2060
Bsp1286I	GDGCHC	1 cut(s)	1924
Bsp143I	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
BspACI	CCGC	5 cut(s)	565, 1429, 1516, 1627, 2198
BspANI	GGCC	4 cut(s)	228, 748, 1212, 2249
BspCNI	CTCAG	3 cut(s)	310, 748, 2221
BspDI	ATCGAT	1 cut(s)	1755
BspFNI	CGCG	1 cut(s)	1732
BspLI	GGNNCC	3 cut(s)	807, 2172, 2188
BspMAI	CTGCAG	4 cut(s)	1146, 1574, 1685, 1819
BspOI	GCTAGC	1 cut(s)	1707
BspPI	GGATC	5 cut(s)	800, 813, 1324, 1498, 1609
BspT104I	TTCGAA	1 cut(s)	2060
BspT107I	GGYRCC	1 cut(s)	2170
BspTNI	GGTCTC	2 cut(s)	789, 1177
BsrDI	GCAATG	1 cut(s)	1726
BsrFI	RCCGGY	1 cut(s)	2258
BsrI	ACTGG	8 cut(s)	171, 653, 755, 1235, 1324, 1871, 1929, 2087
BssAI	RCCGGY	1 cut(s)	2258
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
BssNI	GRCGYC	1 cut(s)	2171
Bst2UI	CCWGG	3 cut(s)	231, 1161, 1380
Bst4CI	ACNGT	4 cut(s)	496, 1254, 1610, 1751
Bst6I	CTCTTC	4 cut(s)	63, 792, 1502, 1613
BstACI	GRCGYC	1 cut(s)	2171
BstAPI	GCANNNNNTGC	2 cut(s)	169, 1052
BstBI	TTCGAA	1 cut(s)	2060
BstC8I	GCNNGC	7 cut(s)	101, 667, 1214, 1427, 1662, 1705, 2157
BstDEI	CTNAG	4 cut(s)	186, 318, 735, 2208
BstF5I	GGATG	6 cut(s)	315, 343, 1156, 1528, 1555, 1639
BstFNI	CGCG	1 cut(s)	1732
BstH2I	RGCGCY	1 cut(s)	2174
BstHHI	GCGC	2 cut(s)	1401, 2173
BstKTI	GATC	8 cut(s)	12, 406, 808, 1181, 1332, 1493, 1604, 2223
BstMAI	GTCTC	8 cut(s)	509, 789, 1095, 1100, 1177, 1529, 1571, 1640
BstMBI	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 422, 703, 959, 968, 1052, 2255
BstNI	CCWGG	3 cut(s)	231, 1161, 1380
BstNSI	RCATGY	3 cut(s)	272, 1141, 1664
BstSCI	CCNGG	4 cut(s)	141, 229, 1159, 1378
BstSFI	CTRYAG	6 cut(s)	473, 514, 1142, 1570, 1681, 1815
BstSLI	GKGCMC	1 cut(s)	1924
BstUI	CGCG	1 cut(s)	1732
BstV1I	GCAGC	3 cut(s)	1128, 1695, 2242
BstV2I	GAAGAC	3 cut(s)	125, 450, 1322
BstX2I	RGATCY	2 cut(s)	403, 805
BstYI	RGATCY	2 cut(s)	403, 805
Bsu15I	ATCGAT	1 cut(s)	1755
BsuI	GTATCC	2 cut(s)	973, 1348
BsuRI	GGCC	4 cut(s)	228, 748, 1212, 2249
BsuTUI	ATCGAT	1 cut(s)	1755
BtrI	CACGTC	2 cut(s)	123, 364
BtsCI	GGATG	6 cut(s)	315, 343, 1156, 1528, 1555, 1639
BtsI	GCAGTG	3 cut(s)	692, 1151, 1579
BtsIMutI	CAGTG	9 cut(s)	394, 692, 743, 1048, 1151, 1239, 1579, 1615, 1922
Cac8I	GCNNGC	7 cut(s)	101, 667, 1214, 1427, 1662, 1705, 2157
CaiI	CAGNNNCTG	1 cut(s)	1241
CfoI	GCGC	2 cut(s)	1401, 2173
Cfr10I	RCCGGY	1 cut(s)	2258
Cfr13I	GGNCC	5 cut(s)	227, 260, 1210, 1943, 2111
ClaI	ATCGAT	1 cut(s)	1755
Csp6I	GTAC	4 cut(s)	900, 1015, 1126, 1861
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviQI	GTAC	4 cut(s)	900, 1015, 1126, 1861
DdeI	CTNAG	4 cut(s)	186, 318, 735, 2208
DinI	GGCGCC	1 cut(s)	2172
DpnI	GATC	8 cut(s)	11, 405, 807, 1180, 1331, 1492, 1603, 2222
DpnII	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
DraIII	CACNNNGTG	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	746, 2247
Eam1104I	CTCTTC	4 cut(s)	63, 792, 1502, 1613
EarI	CTCTTC	4 cut(s)	63, 792, 1502, 1613
EciI	GGCGGA	2 cut(s)	1444, 2187
Eco31I	GGTCTC	2 cut(s)	789, 1177
Eco47I	GGWCC	3 cut(s)	260, 1943, 2111
Eco57I	CTGAAG	8 cut(s)	348, 462, 706, 779, 1133, 1263, 1463, 1866
Eco88I	CYCGRG	2 cut(s)	18, 276
EcoRII	CCWGG	3 cut(s)	229, 1159, 1378
EcoT22I	ATGCAT	1 cut(s)	584
EgeI	GGCGCC	1 cut(s)	2172
EheI	GGCGCC	1 cut(s)	2172
Esp3I	CGTCTC	2 cut(s)	1100, 1571
FaqI	GGGAC	3 cut(s)	350, 530, 1433
FauI	CCCGC	2 cut(s)	1509, 1620
FauNDI	CATATG	2 cut(s)	671, 1948
Fnu4HI	GCNGC	3 cut(s)	1142, 1684, 2256
FokI	GGATG	6 cut(s)	322, 330, 1143, 1535, 1562, 1646
Fsp4HI	GCNGC	3 cut(s)	1142, 1684, 2256
FspBI	CTAG	9 cut(s)	104, 215, 264, 422, 707, 810, 879, 1704, 2012
GlaI	GCGC	2 cut(s)	1400, 2172
GluI	GCNGC	3 cut(s)	1142, 1684, 2256
GsaI	CCCAGC	1 cut(s)	870
GsuI	CTGGAG	2 cut(s)	252, 1946
HaeII	RGCGCY	1 cut(s)	2174
HaeIII	GGCC	4 cut(s)	228, 748, 1212, 2249
HapII	CCGG	3 cut(s)	142, 857, 2259
HhaI	GCGC	2 cut(s)	1401, 2173
Hin1I	GRCGYC	1 cut(s)	2171
Hin6I	GCGC	2 cut(s)	1399, 2171
HinP1I	GCGC	2 cut(s)	1399, 2171
HincII	GTYRAC	2 cut(s)	1103, 1297
HindII	GTYRAC	2 cut(s)	1103, 1297
HindIII	AAGCTT	1 cut(s)	1962
HinfI	GANTC	5 cut(s)	61, 464, 1088, 1541, 1652
HpaII	CCGG	3 cut(s)	142, 857, 2259
HphI	GGTGA	4 cut(s)	187, 1142, 1175, 1466
Hpy166II	GTNNAC	7 cut(s)	1103, 1128, 1297, 1303, 1502, 1613, 1922
Hpy188III	TCNNGA	8 cut(s)	20, 65, 278, 353, 440, 1182, 1697, 2028
Hpy8I	GTNNAC	7 cut(s)	1103, 1128, 1297, 1303, 1502, 1613, 1922
HpyCH4III	ACNGT	4 cut(s)	496, 1254, 1610, 1751
HpyCH4IV	ACGT	5 cut(s)	122, 363, 1299, 1564, 1782
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 422, 703, 959, 968, 1052, 2255
HpyF3I	CTNAG	4 cut(s)	186, 318, 735, 2208
HpySE526I	ACGT	5 cut(s)	122, 363, 1299, 1564, 1782
Hsp92I	GRCGYC	1 cut(s)	2171
HspAI	GCGC	2 cut(s)	1399, 2171
KasI	GGCGCC	1 cut(s)	2170
Kzo9I	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
LmnI	GCTCC	2 cut(s)	233, 2105
Lsp1109I	GCAGC	3 cut(s)	1128, 1695, 2242
MaeI	CTAG	9 cut(s)	104, 215, 264, 422, 707, 810, 879, 1704, 2012
MaeII	ACGT	5 cut(s)	122, 363, 1299, 1564, 1782
MaeIII	GTNAC	8 cut(s)	331, 520, 622, 881, 1148, 1237, 1411, 1745
MalI	GATC	8 cut(s)	11, 405, 807, 1180, 1331, 1492, 1603, 2222
MboI	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
MflI	RGATCY	2 cut(s)	403, 805
MhlI	GDGCHC	1 cut(s)	1924
MlsI	TGGCCA	2 cut(s)	748, 2249
MluNI	TGGCCA	2 cut(s)	748, 2249
Mly113I	GGCGCC	1 cut(s)	2171
MlyI	GAGTC	5 cut(s)	70, 458, 1097, 1535, 1646
MmeI	TCCRAC	1 cut(s)	238
Mox20I	TGGCCA	2 cut(s)	748, 2249
Mph1103I	ATGCAT	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	2191
MscI	TGGCCA	2 cut(s)	748, 2249
MseI	TTAA	2 cut(s)	129, 1284
MslI	CAYNNNNRTG	3 cut(s)	577, 606, 1161
Msp20I	TGGCCA	2 cut(s)	748, 2249
MspI	CCGG	3 cut(s)	142, 857, 2259
MspR9I	CCNGG	4 cut(s)	143, 231, 1161, 1380
Mva1269I	GAATGC	3 cut(s)	484, 694, 1294
MvaI	CCWGG	3 cut(s)	231, 1161, 1380
MvnI	CGCG	1 cut(s)	1732
MwoI	GCNNNNNNNGC	7 cut(s)	169, 422, 703, 959, 968, 1052, 2255
NarI	GGCGCC	1 cut(s)	2171
NciI	CCSGG	1 cut(s)	143
NdeI	CATATG	2 cut(s)	671, 1948
NdeII	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
NheI	GCTAGC	1 cut(s)	1703
NlaIV	GGNNCC	3 cut(s)	807, 2172, 2188
NmuCI	GTSAC	4 cut(s)	331, 1148, 1237, 1745
NsiI	ATGCAT	1 cut(s)	584
NspI	RCATGY	3 cut(s)	272, 1141, 1664
NspV	TTCGAA	1 cut(s)	2060
PaeI	GCATGC	1 cut(s)	1664
PaeR7I	CTCGAG	2 cut(s)	18, 276
PctI	GAATGC	3 cut(s)	484, 694, 1294
PdmI	GAANNNNTTC	1 cut(s)	2191
PkrI	GCNGC	3 cut(s)	1143, 1685, 2257
PleI	GAGTC	5 cut(s)	69, 458, 1096, 1535, 1646
PluTI	GGCGCC	1 cut(s)	2174
PpsI	GAGTC	5 cut(s)	69, 458, 1096, 1535, 1646
Psp1406I	AACGTT	1 cut(s)	1299
Psp6I	CCWGG	3 cut(s)	229, 1159, 1378
PspFI	CCCAGC	1 cut(s)	866
PspGI	CCWGG	3 cut(s)	229, 1159, 1378
PspN4I	GGNNCC	3 cut(s)	807, 2172, 2188
PspPI	GGNCC	5 cut(s)	227, 260, 1210, 1943, 2111
PsrI	GAACNNNNNNTAC	2 cut(s)	866, 898
PstI	CTGCAG	4 cut(s)	1146, 1574, 1685, 1819
PstNI	CAGNNNCTG	1 cut(s)	1241
PsuI	RGATCY	2 cut(s)	403, 805
RsaI	GTAC	4 cut(s)	901, 1016, 1127, 1862
RsaNI	GTAC	4 cut(s)	900, 1015, 1126, 1861
RseI	CAYNNNNRTG	3 cut(s)	577, 606, 1161
SaqAI	TTAA	2 cut(s)	129, 1284
SatI	GCNGC	3 cut(s)	1142, 1684, 2256
Sau3AI	GATC	8 cut(s)	9, 403, 805, 1178, 1329, 1490, 1601, 2220
Sau96I	GGNCC	5 cut(s)	227, 260, 1210, 1943, 2111
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	5 cut(s)	70, 458, 1097, 1535, 1646
ScrFI	CCNGG	4 cut(s)	143, 231, 1161, 1380
SduI	GDGCHC	1 cut(s)	1924
SfcI	CTRYAG	6 cut(s)	473, 514, 1142, 1570, 1681, 1815
SfoI	GGCGCC	1 cut(s)	2172
Sfr274I	CTCGAG	2 cut(s)	18, 276
SfuI	TTCGAA	1 cut(s)	2060
SinI	GGWCC	3 cut(s)	260, 1943, 2111
SlaI	CTCGAG	2 cut(s)	18, 276
SmiMI	CAYNNNNRTG	3 cut(s)	577, 606, 1161
SmlI	CTYRAG	5 cut(s)	18, 276, 1543, 1654, 2150
SmoI	CTYRAG	5 cut(s)	18, 276, 1543, 1654, 2150
SphI	GCATGC	1 cut(s)	1664
SsiI	CCGC	5 cut(s)	565, 1429, 1516, 1627, 2198
SspDI	GGCGCC	1 cut(s)	2170
SspMI	CTAG	9 cut(s)	104, 215, 264, 422, 707, 810, 879, 1704, 2012
StyD4I	CCNGG	4 cut(s)	141, 229, 1159, 1378
TaaI	ACNGT	4 cut(s)	496, 1254, 1610, 1751
TaiI	ACGT	5 cut(s)	125, 366, 1302, 1567, 1785
TaqII	GACCGA	1 cut(s)	1931
TatI	WGTACW	2 cut(s)	899, 1125
Tru1I	TTAA	2 cut(s)	129, 1284
Tru9I	TTAA	2 cut(s)	129, 1284
TscAI	CASTG	9 cut(s)	394, 699, 743, 1048, 1151, 1246, 1579, 1615, 1929
TseFI	GTSAC	4 cut(s)	331, 1148, 1237, 1745
TseI	GCWGC	3 cut(s)	1141, 1683, 2255
Tsp45I	GTSAC	4 cut(s)	331, 1148, 1237, 1745
TspGWI	ACGGA	4 cut(s)	1088, 1322, 2118, 2199
TspRI	CASTG	9 cut(s)	394, 699, 743, 1048, 1151, 1246, 1579, 1615, 1929
VneI	GTGCAC	1 cut(s)	1920
VpaK11BI	GGWCC	3 cut(s)	260, 1943, 2111
XapI	RAATTY	6 cut(s)	377, 531, 942, 1280, 1787, 2233
XceI	RCATGY	3 cut(s)	272, 1141, 1664
XhoI	CTCGAG	2 cut(s)	18, 276
XmnI	GAANNNNTTC	1 cut(s)	2191
XspI	CTAG	9 cut(s)	104, 215, 264, 422, 707, 810, 879, 1704, 2012
ZrmI	AGTACT	1 cut(s)	901
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.