MD15G1311900.v1.1

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015034
Physical Location & Seq
Reverse (-)
31426443 .. 31426820
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1311900.v1.1.491

Sequence Viewer

Length: 378 bp
ATGTCTGACCCCTTGAAGAATGGTGTTTTGGCTGTTCAAACAATACGCAACAACATAATGGCGTCTACGCTGTTGGCAACAACAGCCATCACTCTCAGTTCTCTCATCGACGTATTTGTCAGCACTACATCAGACTCCGGCAACACAGCATCTAGACTAGTTTACGGGAATAAGAGTCCCATTCTCTCTTCAGTCAAGTACTTTTCCATCTTGCTTTGCTTTCTCGTTGCCTTTCTCTTGAATGTGCATTCTATTAGATACTATGCACATGTTAGATTCTTAGCCAGTGTGCCCACATGGAAAGGCCAGAAGTATTACCTCGAGTACGTTGCCCAAAACTTGAATCGTGGAAGCTATTTTTGGTCCCTCGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

9.67

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 5 - 125 1.6e-33 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18215 AT3G18215
fragaria_vesca FvH4_5g16810
malus_domestica MD06G1222100.v1.1 MD15G1311900.v1.1
prunus_persica Prupe.5G226500_v2.0.a1 Prupe.5G226500_v2.0.a1
pyrus_communis pycom06g19760
rosa_chinensis RchiOBHm_Chr7g0179261
rosa_laevigata RLG00000005368
rosa_multiflora Rmu_sc0006939.1_g000006
rosa_roxburghii Rroxscaffold_3G00274170
rosa_rugosa Rorug06G0422800
rosa_samantha Rh7CG023300 Rh7DG022600
rosa_wichuraiana Rw7G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 200, 326
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 16, 38, 241, 343
AhlI ACTAGT 1 cut(s) 157
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 343, 375
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 294
BccI CCATC 2 cut(s) 95, 215
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 153, 158
BmcAI AGTACT 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 294
BshFI GGCC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 2 cut(s) 162, 349
BsmFI GGGAC 2 cut(s) 162, 349
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 294
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 95, 280
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 199, 325
CviAII CATG 2 cut(s) 269, 297
CviJI RGCY 5 cut(s) 32, 86, 284, 306, 354
CviKI_1 RGCY 5 cut(s) 32, 86, 284, 306, 354
CviQI GTAC 2 cut(s) 199, 325
DdeI CTNAG 2 cut(s) 95, 280
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 320
FaeI CATG 2 cut(s) 272, 300
FaiI YATR 5 cut(s) 56, 264, 270, 298, 376
FaqI GGGAC 2 cut(s) 162, 349
FatI CATG 2 cut(s) 268, 296
FblI GTMKAC 1 cut(s) 65
FspBI CTAG 2 cut(s) 153, 158
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 272, 300
HinfI GANTC 4 cut(s) 134, 175, 276, 343
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 66, 163
Hpy188I TCNGA 3 cut(s) 7, 133, 371
Hpy188III TCNNGA 2 cut(s) 153, 238
Hpy8I GTNNAC 2 cut(s) 66, 163
Hpy99I CGWCG 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 111, 327
HpyCH4V TGCA 2 cut(s) 247, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 95, 280
HpySE526I ACGT 2 cut(s) 111, 327
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 272, 300
LpnPI CCDG 3 cut(s) 151, 298, 320
LweI GCATC 1 cut(s) 158
MaeI CTAG 2 cut(s) 153, 158
MaeII ACGT 2 cut(s) 111, 327
MboII GAAGA 2 cut(s) 28, 180
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 128, 184
MnlI CCTC 2 cut(s) 329, 377
MspI CCGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 272, 300
NlaIV GGNNCC 1 cut(s) 365
NspI RCATGY 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 320
PciI ACATGT 1 cut(s) 268
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 276, 343
PleI GAGTC 2 cut(s) 128, 183
PpsI GAGTC 2 cut(s) 128, 183
PscI ACATGT 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 320
RsaI GTAC 2 cut(s) 200, 326
RsaNI GTAC 2 cut(s) 199, 325
Sau96I GGNCC 1 cut(s) 363
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 2 cut(s) 128, 184
SduI GDGCHC 1 cut(s) 294
SetI ASST 4 cut(s) 114, 321, 330, 356
SfaNI GCATC 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 157
SspMI CTAG 2 cut(s) 153, 158
TaiI ACGT 2 cut(s) 114, 330
TaqI TCGA 2 cut(s) 108, 321
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 2 cut(s) 276, 343
TscAI CASTG 1 cut(s) 292
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 363
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 2 cut(s) 153, 158
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.