FvH4_5g16810

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015034
Physical Location & Seq
Reverse (-)
9610192 .. 9612652
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16810.t1

Sequence Viewer

Length: 723 bp
ATGGAAGAGGAGGATTTGGACTATGTTCTGGTTCCATTGGGTCTGTGTGTTCTGGGAACATATCATGTTTGGCTTCTGATCACTGTGCTACGTCATCCAATACGAACTGTGATCGGTCTGAATGCTCAGTCTCGTCACCAGTGGGCCTTATCCATGATGAGTGACCCTTTGAAGAATGGTGTTTTGGCTGTCCAGACAATACGCAACAACATAATGGCATCAACACTTTTGGCAACAACAGCTATCACACTCAGTTCTCTTATCAGTGTGTTCGTCAGCAGTACATCAAACTCCGGAAACACCTCAAATCTAGTTTATGGCAATAAGACAGCCACTCTCTCTTCAATAAAGTACTTCTCTATCTTGCTGTGCTTTCTTGTTGCCTTTCTCTGCAATGTGCAGTCTATTAGATACTATGCCCATGTTAGCTTCTTGGCCACTGTTCCAACATGGCAAGGTAGAAAGGATTGTATCGAGTATGTTGCAAGAAACTTGAATCGGGGAAGCTACTTTTGGTCACTTGGATTGCGAGCTTTCTACTTCTCATTCCCTCTCTTCCTTTGGATATTTGGGCCTATACCAATGTTTGCATGCAGCTGTGTCATCTCTTTTGTTCTTTATTTCCTAGACACTACCACCAGCTTCACACGACTTCTTCACAGTCACTCAGTGAAAGAGGTAAAAGCTGATCATGATCTAGAATCACTCGGACAATTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

241

Amino Acids

26.96

Weight (kDa)

8.53

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 9 - 213 2.4e-72 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18215 AT3G18215
fragaria_vesca FvH4_5g16810
malus_domestica MD06G1222100.v1.1 MD15G1311900.v1.1
prunus_persica Prupe.5G226500_v2.0.a1 Prupe.5G226500_v2.0.a1
pyrus_communis pycom06g19760
rosa_chinensis RchiOBHm_Chr7g0179261
rosa_laevigata RLG00000005368
rosa_multiflora Rmu_sc0006939.1_g000006
rosa_roxburghii Rroxscaffold_3G00274170
rosa_rugosa Rorug06G0422800
rosa_samantha Rh7CG023300 Rh7DG022600
rosa_wichuraiana Rw7G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 2 cut(s) 283, 353
AgsI TTSAA 3 cut(s) 172, 345, 496
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 496, 528
AluBI AGCT 7 cut(s) 242, 429, 507, 533, 597, 642, 686
AluI AGCT 7 cut(s) 242, 429, 507, 533, 597, 642, 686
Alw26I GTCTC 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 3 cut(s) 144, 435, 572
ApeKI GCWGC 1 cut(s) 594
AspS9I GGNCC 2 cut(s) 144, 572
AsuHPI GGTGA 1 cut(s) 128
BalI TGGCCA 1 cut(s) 437
BbvI GCAGC 1 cut(s) 606
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BclI TGATCA 2 cut(s) 78, 688
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 3 cut(s) 311, 626, 698
BisI GCNGC 1 cut(s) 595
BlsI GCNGC 1 cut(s) 596
BmcAI AGTACT 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 144, 572
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 293
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 693
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 140, 265, 681
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 606
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 3 cut(s) 146, 437, 574
BsiSI CCGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 3 cut(s) 146, 437, 574
Bsp13I TCCGGA 1 cut(s) 293
Bsp143I GATC 4 cut(s) 78, 111, 688, 694
BspANI GGCC 3 cut(s) 146, 437, 574
BspCNI CTCAG 3 cut(s) 139, 264, 680
BspEI TCCGGA 1 cut(s) 293
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 1 cut(s) 139
BssMI GATC 4 cut(s) 78, 111, 688, 694
Bst4CI ACNGT 4 cut(s) 85, 109, 442, 662
Bst6I CTCTTC 2 cut(s) 346, 560
BstC8I GCNNGC 2 cut(s) 531, 592
BstDEI CTNAG 3 cut(s) 126, 251, 667
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 4 cut(s) 81, 114, 691, 697
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 78, 111, 688, 694
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 594
BstV1I GCAGC 1 cut(s) 606
BsuRI GGCC 3 cut(s) 146, 437, 574
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 5 cut(s) 81, 146, 271, 438, 675
Cac8I GCNNGC 2 cut(s) 531, 592
CciI TCATGA 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 144, 572
Csp6I GTAC 2 cut(s) 282, 352
CviAII CATG 6 cut(s) 65, 154, 422, 450, 591, 692
CviQI GTAC 2 cut(s) 282, 352
DdeI CTNAG 3 cut(s) 126, 251, 667
DpnI GATC 4 cut(s) 80, 113, 690, 696
DpnII GATC 4 cut(s) 78, 111, 688, 694
DraIII CACNNNGTG 1 cut(s) 670
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 346, 560
EarI CTCTTC 2 cut(s) 346, 560
FaeI CATG 6 cut(s) 68, 157, 425, 453, 594, 695
FatI CATG 6 cut(s) 64, 153, 421, 449, 590, 691
FbaI TGATCA 2 cut(s) 78, 688
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 3 cut(s) 311, 626, 698
GluI GCNGC 1 cut(s) 595
HaeIII GGCC 3 cut(s) 146, 437, 574
HapII CCGG 1 cut(s) 294
Hin1II CATG 6 cut(s) 68, 157, 425, 453, 594, 695
HinfI GANTC 2 cut(s) 496, 701
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 78, 120, 710
Hpy188III TCNNGA 4 cut(s) 193, 294, 692, 698
HpyCH4III ACNGT 4 cut(s) 85, 109, 442, 662
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 393, 400, 485, 590, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 126, 251, 667
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 6 cut(s) 68, 157, 425, 453, 594, 695
Kpn2I TCCGGA 1 cut(s) 293
Ksp22I TGATCA 2 cut(s) 78, 688
Kzo9I GATC 4 cut(s) 78, 111, 688, 694
LpnPI CCDG 6 cut(s) 14, 38, 152, 206, 307, 652
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 1 cut(s) 227
MaeI CTAG 3 cut(s) 311, 626, 698
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 4 cut(s) 134, 161, 516, 662
MalI GATC 4 cut(s) 80, 113, 690, 696
MboI GATC 4 cut(s) 78, 111, 688, 694
MboII GAAGA 5 cut(s) 17, 184, 333, 547, 647
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 1 cut(s) 713
MluNI TGGCCA 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 4 cut(s) 4, 313, 561, 670
Mox20I TGGCCA 1 cut(s) 437
MroI TCCGGA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 4 cut(s) 78, 111, 688, 694
NlaIII CATG 6 cut(s) 68, 157, 425, 453, 594, 695
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 4 cut(s) 134, 161, 516, 662
NspI RCATGY 1 cut(s) 594
PaeI GCATGC 1 cut(s) 594
PagI TCATGA 1 cut(s) 691
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 496, 701
PkrI GCNGC 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 144, 572
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 2 cut(s) 283, 353
RsaNI GTAC 2 cut(s) 282, 352
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 4 cut(s) 78, 111, 688, 694
Sau96I GGNCC 2 cut(s) 144, 572
ScaI AGTACT 1 cut(s) 353
SfaNI GCATC 1 cut(s) 227
SphI GCATGC 1 cut(s) 594
Sse9I AATT 1 cut(s) 713
SspMI CTAG 3 cut(s) 311, 626, 698
TaaI ACNGT 4 cut(s) 85, 109, 442, 662
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 474
TaqII GACCGA 1 cut(s) 104
TasI AATT 1 cut(s) 713
TatI WGTACW 2 cut(s) 281, 351
TfiI GAWTC 2 cut(s) 496, 701
TscAI CASTG 5 cut(s) 88, 146, 271, 445, 675
TseFI GTSAC 4 cut(s) 134, 161, 516, 662
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 4 cut(s) 134, 161, 516, 662
TspRI CASTG 5 cut(s) 88, 146, 271, 445, 675
XbaI TCTAGA 1 cut(s) 697
XceI RCATGY 1 cut(s) 594
XspI CTAG 3 cut(s) 311, 626, 698
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.