Prupe.5G226500_v2.0.a1

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015034
Physical Location & Seq
Reverse (-)
17455585 .. 17457669
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G226500.2

Sequence Viewer

Length: 723 bp
ATGGAAGAGGAGCAGCTGGACTATGTGCTGGTACCACTGGGTCTGTTGGTGTTTGGAACATATCACGCGTGGCTGCTCATCACAATTCTGCGTTATCCAATTCGAACTGTCGTTGGCCTCAATGCTCAGTCTCGTCGCCAGTGGGCCTTATCCATGATGACTGACCCCTTGAAGAATGGTGTTTTGGCCGTTCAAACCATACGCAACAACATAATGGCATCTACACTGTTGGCAACAACAGCTATCACTTTGAGTTCTCTGATCGGTGTATTTGTGAGCACACCATCAAACTCTCGCAGCACAGCATCGAGATTAGTTTATGGCAATAAGACTGAATTTCTCTCTTCGATCAAGTACGTTACTATCTTGCTGTGCTTTCTTGTTGCCTTTATCTTGAATGTGCAGTCAATTAGATACTATGCCCATGTTAGCTTCTTAGCCACTGTGCCCACATTGAAGAGTCAAAAGGATTATATGGAGTACGTTGTGAGGAACTTGAACCGAGGAAGCTTCTTCTGGTCCCTTGGATTAAGAGCTTTCTACCTCTCATTCCCTCTCTTCCTCTGGATATTTGGACCCATACCCATGTTTGTGTGTTGCTGCATTATGTCCTGTGTTCTTTATTTCTTGGACACAAGCACCAGTTTTACAAGACATCTTCACACTAACTCTCTCAAAGAGGTCGCATGTGATGATGTGGAATCAGTTGGACAACCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

241

Amino Acids

27.12

Weight (kDa)

8.92

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18215 AT3G18215
fragaria_vesca FvH4_5g16810
malus_domestica MD06G1222100.v1.1 MD15G1311900.v1.1
prunus_persica Prupe.5G226500_v2.0.a1 Prupe.5G226500_v2.0.a1
pyrus_communis pycom06g19760
rosa_chinensis RchiOBHm_Chr7g0179261
rosa_laevigata RLG00000005368
rosa_multiflora Rmu_sc0006939.1_g000006
rosa_roxburghii Rroxscaffold_3G00274170
rosa_rugosa Rorug06G0422800
rosa_samantha Rh7CG023300 Rh7DG022600
rosa_wichuraiana Rw7G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 3 cut(s) 33, 356, 482
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 5 cut(s) 172, 194, 397, 457, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 5 cut(s) 16, 242, 432, 510, 536
AluI AGCT 5 cut(s) 16, 242, 432, 510, 536
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 3 cut(s) 115, 144, 186
ApeKI GCWGC 4 cut(s) 13, 73, 297, 600
ApoI RAATTY 1 cut(s) 335
Asp718I GGTACC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 144, 519, 575
AsuII TTCGAA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 519, 575
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 4 cut(s) 25, 60, 309, 587
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 4 cut(s) 14, 74, 298, 601
BlsI GCNGC 4 cut(s) 15, 75, 299, 602
Bme18I GGWCC 2 cut(s) 519, 575
BmgT120I GGNCC 3 cut(s) 144, 519, 575
BmiI GGNNCC 3 cut(s) 33, 521, 577
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 227, 314
BmuI ACTGGG 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 715
Bpu14I TTCGAA 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 502, 523
Bse1I ACTGG 3 cut(s) 42, 139, 642
BseDI CCNNGG 2 cut(s) 502, 523
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 3 cut(s) 42, 139, 642
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 4 cut(s) 25, 60, 309, 587
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 117, 146, 188
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 505
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 3 cut(s) 117, 146, 188
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 281, 450
Bsp143I GATC 2 cut(s) 261, 348
BspANI GGCC 3 cut(s) 117, 146, 188
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 719
BspLI GGNNCC 3 cut(s) 33, 521, 577
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 31
BsrI ACTGG 3 cut(s) 42, 139, 642
BssECI CCNNGG 2 cut(s) 502, 523
BssMI GATC 2 cut(s) 261, 348
BssT1I CCWWGG 1 cut(s) 523
Bst4CI ACNGT 4 cut(s) 109, 228, 445, 717
Bst6I CTCTTC 3 cut(s) 349, 452, 563
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 126, 436
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 264, 351
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 261, 348
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 690
BstPAI GACNNNNGTC 1 cut(s) 715
BstSLI GKGCMC 1 cut(s) 450
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 25, 60, 309, 587
BsuRI GGCC 3 cut(s) 117, 146, 188
BtsIMutI CAGTG 4 cut(s) 35, 146, 224, 441
CciI TCATGA 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 144, 519, 575
Csp6I GTAC 3 cut(s) 32, 355, 481
CviAII CATG 5 cut(s) 154, 425, 586, 687, 720
CviQI GTAC 3 cut(s) 32, 355, 481
DdeI CTNAG 2 cut(s) 126, 436
DpnI GATC 2 cut(s) 263, 350
DpnII GATC 2 cut(s) 261, 348
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 3 cut(s) 349, 452, 563
EarI CTCTTC 3 cut(s) 349, 452, 563
Eco130I CCWWGG 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 519, 575
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 5 cut(s) 157, 428, 589, 690, 723
FaqI GGGAC 1 cut(s) 505
FatI CATG 5 cut(s) 153, 424, 585, 686, 719
Fnu4HI GCNGC 4 cut(s) 14, 74, 298, 601
Fsp4HI GCNGC 4 cut(s) 14, 74, 298, 601
GluI GCNGC 4 cut(s) 14, 74, 298, 601
HaeIII GGCC 3 cut(s) 117, 146, 188
Hin1II CATG 5 cut(s) 157, 428, 589, 690, 723
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 2 cut(s) 460, 701
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 4 cut(s) 309, 394, 565, 720
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 4 cut(s) 109, 228, 445, 717
HpyCH4IV ACGT 2 cut(s) 357, 483
HpyCH4V TGCA 2 cut(s) 403, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 126, 436
HpySE526I ACGT 2 cut(s) 357, 483
Hsp92II CATG 5 cut(s) 157, 428, 589, 690, 723
KpnI GGTACC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 261, 348
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 2, 14, 23, 152, 502, 550, 625, 655
Lsp1109I GCAGC 4 cut(s) 25, 60, 309, 587
LweI GCATC 2 cut(s) 227, 314
MaeII ACGT 2 cut(s) 357, 483
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 263, 350
MboI GATC 2 cut(s) 261, 348
MboII GAAGA 7 cut(s) 17, 184, 336, 469, 505, 550, 650
MhlI GDGCHC 2 cut(s) 281, 450
MluCI AATT 4 cut(s) 84, 99, 335, 408
MluI ACGCGT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 7 cut(s) 128, 483, 497, 554, 564, 572, 673
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 584, 590
MspA1I CMGCKG 1 cut(s) 16
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 261, 348
NlaIII CATG 5 cut(s) 157, 428, 589, 690, 723
NlaIV GGNNCC 3 cut(s) 33, 521, 577
NspI RCATGY 1 cut(s) 690
NspV TTCGAA 1 cut(s) 103
PagI TCATGA 1 cut(s) 719
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 4 cut(s) 15, 75, 299, 602
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PshAI GACNNNNGTC 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 33, 521, 577
PspPI GGNCC 3 cut(s) 144, 519, 575
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 33, 356, 482
RsaNI GTAC 3 cut(s) 32, 355, 481
RseI CAYNNNNRTG 2 cut(s) 584, 590
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 4 cut(s) 14, 74, 298, 601
Sau3AI GATC 2 cut(s) 261, 348
Sau96I GGNCC 3 cut(s) 144, 519, 575
SchI GAGTC 1 cut(s) 469
SduI GDGCHC 2 cut(s) 281, 450
SetI ASST 9 cut(s) 18, 244, 360, 434, 486, 512, 538, 546, 684
SfaNI GCATC 2 cut(s) 227, 314
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 2 cut(s) 519, 575
SmiMI CAYNNNNRTG 2 cut(s) 584, 590
Sse9I AATT 4 cut(s) 84, 99, 335, 408
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 4 cut(s) 109, 228, 445, 717
TaiI ACGT 2 cut(s) 360, 486
TaqI TCGA 3 cut(s) 103, 308, 347
TasI AATT 4 cut(s) 84, 99, 335, 408
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 4 cut(s) 42, 146, 231, 448
TseI GCWGC 4 cut(s) 13, 73, 297, 600
TspRI CASTG 4 cut(s) 42, 146, 231, 448
VpaK11BI GGWCC 2 cut(s) 519, 575
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.