AT3G18380

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012161
Physical Location & Seq
Reverse (-)
6310712 .. 6313406
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18380.3

Sequence Viewer

Length: 1047 bp
ATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

348

Amino Acids

38.52

Weight (kDa)

8.5

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 139 - 267 4.3e-45 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 514
AccBSI CCGCTC 2 cut(s) 154, 893
AccI GTMKAC 2 cut(s) 7, 106
AccII CGCG 1 cut(s) 274
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 8 cut(s) 24, 154, 272, 536, 811, 891, 902, 1032
AclWI GGATC 2 cut(s) 506, 962
AcsI RAATTY 2 cut(s) 349, 431
AcyI GRCGYC 2 cut(s) 365, 690
AfiI CCNNNNNNNGG 3 cut(s) 20, 52, 778
AgsI TTSAA 6 cut(s) 119, 181, 203, 311, 437, 551
AhdI GACNNNNNGTC 1 cut(s) 725
AjnI CCWGG 4 cut(s) 100, 244, 449, 657
AloI GAACNNNNNNTCC 2 cut(s) 924, 956
AluBI AGCT 9 cut(s) 122, 242, 253, 479, 488, 677, 935, 1011, 1022
AluI AGCT 9 cut(s) 122, 242, 253, 479, 488, 677, 935, 1011, 1022
Alw26I GTCTC 2 cut(s) 600, 812
AlwI GGATC 2 cut(s) 506, 962
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 815, 956
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 1 cut(s) 812
ApeKI GCWGC 2 cut(s) 905, 1019
ApoI RAATTY 2 cut(s) 349, 431
Asp700I GAANNNNTTC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 26, 813
AsuC2I CCSGG 3 cut(s) 357, 393, 930
AsuHPI GGTGA 2 cut(s) 138, 521
AsuII TTCGAA 1 cut(s) 543
AvaI CYCGRG 2 cut(s) 815, 956
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 892, 1031
BccI CCATC 2 cut(s) 58, 449
BceAI ACGGC 1 cut(s) 836
BciT130I CCWGG 4 cut(s) 102, 246, 451, 659
BcnI CCSGG 3 cut(s) 357, 393, 930
BcoDI GTCTC 2 cut(s) 600, 812
BfaI CTAG 4 cut(s) 485, 896, 1008, 1045
BfmI CTRYAG 2 cut(s) 80, 936
BfuAI ACCTGC 1 cut(s) 514
BglII AGATCT 1 cut(s) 640
BisI GCNGC 5 cut(s) 272, 812, 903, 906, 1020
BlsI GCNGC 5 cut(s) 273, 813, 904, 907, 1021
Bme1390I CCNGG 7 cut(s) 102, 246, 357, 393, 451, 659, 930
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 725
BmeT110I CYCGRG 2 cut(s) 815, 956
BmgT120I GGNCC 2 cut(s) 26, 813
BmrFI CCNGG 7 cut(s) 102, 246, 357, 393, 451, 659, 930
BmrI ACTGGG 1 cut(s) 9
BmsI GCATC 3 cut(s) 620, 889, 889
BmuI ACTGGG 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 724
BplI GAGNNNNNCTC 2 cut(s) 970, 1002
BpmI CTGGAG 2 cut(s) 657, 972
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 3 cut(s) 357, 393, 930
BsaHI GRCGYC 2 cut(s) 365, 690
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 245, 450, 777
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 6 cut(s) 582, 612, 630, 660, 924, 954
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 52, 778
Bse1I ACTGG 4 cut(s) 15, 200, 349, 772
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 4 cut(s) 102, 246, 451, 659
BseDI CCNNGG 3 cut(s) 245, 450, 777
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 20, 52, 778
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 3 cut(s) 42, 141, 968
BseNI ACTGG 4 cut(s) 15, 200, 349, 772
BseRI GAGGAG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 892, 1031
BsgI GTGCAG 2 cut(s) 194, 542
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 814
BsiHKCI CYCGRG 2 cut(s) 815, 956
BsiSI CCGG 5 cut(s) 29, 357, 393, 515, 930
BslI CCNNNNNNNGG 3 cut(s) 20, 52, 778
BsmAI GTCTC 2 cut(s) 600, 812
BsnI GGCC 1 cut(s) 814
Bso31I GGTCTC 1 cut(s) 600
BsoBI CYCGRG 2 cut(s) 815, 956
Bsp119I TTCGAA 1 cut(s) 543
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 4 cut(s) 511, 640, 670, 967
BspACI CCGC 8 cut(s) 24, 154, 272, 536, 811, 891, 902, 1032
BspANI GGCC 1 cut(s) 814
BspCNI CTCAG 3 cut(s) 43, 142, 969
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 506, 962
BspT104I TTCGAA 1 cut(s) 543
BspTNI GGTCTC 1 cut(s) 600
BsrBI CCGCTC 2 cut(s) 154, 893
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 4 cut(s) 15, 200, 349, 772
BssECI CCNNGG 3 cut(s) 245, 450, 777
BssMI GATC 4 cut(s) 511, 640, 670, 967
BssNI GRCGYC 2 cut(s) 365, 690
Bst2UI CCWGG 4 cut(s) 102, 246, 451, 659
Bst4CI ACNGT 3 cut(s) 594, 940, 1027
BstACI GRCGYC 2 cut(s) 365, 690
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 369, 477
BstDEI CTNAG 3 cut(s) 51, 150, 977
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 4 cut(s) 514, 643, 673, 970
BstMAI GTCTC 2 cut(s) 600, 812
BstMBI GATC 4 cut(s) 511, 640, 670, 967
BstMWI GCNNNNNNNGC 8 cut(s) 181, 224, 446, 485, 632, 899, 989, 1040
BstNI CCWGG 4 cut(s) 102, 246, 451, 659
BstNSI RCATGY 1 cut(s) 584
BstPAI GACNNNNGTC 1 cut(s) 592
BstSCI CCNGG 7 cut(s) 100, 244, 355, 391, 449, 657, 928
BstSFI CTRYAG 2 cut(s) 80, 936
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 892, 1031
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 2 cut(s) 640, 967
BstYI RGATCY 2 cut(s) 640, 967
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 814
BtsCI GGATG 1 cut(s) 460
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 369, 477
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 26, 813
CpoI CGGWCCG 1 cut(s) 26
CseI GACGC 3 cut(s) 373, 698, 713
CspI CGGWCCG 1 cut(s) 26
CviAII CATG 7 cut(s) 268, 361, 400, 462, 581, 603, 722
DdeI CTNAG 3 cut(s) 51, 150, 977
DpnI GATC 4 cut(s) 513, 642, 672, 969
DpnII GATC 4 cut(s) 511, 640, 670, 967
DriI GACNNNNNGTC 1 cut(s) 725
Eam1105I GACNNNNNGTC 1 cut(s) 725
Eco31I GGTCTC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 2 cut(s) 815, 956
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRII CCWGG 4 cut(s) 100, 244, 449, 657
FaeI CATG 7 cut(s) 271, 364, 403, 465, 584, 606, 725
FatI CATG 7 cut(s) 267, 360, 399, 461, 580, 602, 721
FauI CCCGC 3 cut(s) 529, 898, 1039
FauNDI CATATG 1 cut(s) 339
FblI GTMKAC 2 cut(s) 7, 106
Fnu4HI GCNGC 5 cut(s) 272, 812, 903, 906, 1020
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 5 cut(s) 272, 812, 903, 906, 1020
FspBI CTAG 4 cut(s) 485, 896, 1008, 1045
GluI GCNGC 5 cut(s) 272, 812, 903, 906, 1020
GsuI CTGGAG 2 cut(s) 657, 972
HaeIII GGCC 1 cut(s) 814
HapII CCGG 5 cut(s) 29, 357, 393, 515, 930
HgaI GACGC 3 cut(s) 373, 698, 713
Hin1I GRCGYC 2 cut(s) 365, 690
Hin1II CATG 7 cut(s) 271, 364, 403, 465, 584, 606, 725
HincII GTYRAC 2 cut(s) 8, 107
HindII GTYRAC 2 cut(s) 8, 107
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 3 cut(s) 143, 307, 959
HpaII CCGG 5 cut(s) 29, 357, 393, 515, 930
HphI GGTGA 2 cut(s) 138, 521
Hpy166II GTNNAC 3 cut(s) 8, 107, 856
Hpy188I TCNGA 7 cut(s) 294, 415, 616, 731, 778, 885, 972
Hpy188III TCNNGA 6 cut(s) 116, 190, 400, 515, 701, 896
Hpy8I GTNNAC 3 cut(s) 8, 107, 856
HpyAV CCTTC 3 cut(s) 151, 384, 656
HpyCH4III ACNGT 3 cut(s) 594, 940, 1027
HpyCH4V TGCA 8 cut(s) 175, 461, 475, 523, 626, 908, 953, 1019
HpyF10VI GCNNNNNNNGC 8 cut(s) 181, 224, 446, 485, 632, 899, 989, 1040
HpyF3I CTNAG 3 cut(s) 51, 150, 977
Hsp92I GRCGYC 2 cut(s) 365, 690
Hsp92II CATG 7 cut(s) 271, 364, 403, 465, 584, 606, 725
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 511, 640, 670, 967
LmnI GCTCC 3 cut(s) 247, 932, 1016
Lsp1109I GCAGC 2 cut(s) 892, 1031
LweI GCATC 3 cut(s) 620, 889, 889
MaeI CTAG 4 cut(s) 485, 896, 1008, 1045
MaeIII GTNAC 3 cut(s) 55, 758, 921
MalI GATC 4 cut(s) 513, 642, 672, 969
MbiI CCGCTC 2 cut(s) 154, 893
MboI GATC 4 cut(s) 511, 640, 670, 967
MboII GAAGA 6 cut(s) 255, 563, 566, 726, 729, 811
MflI RGATCY 2 cut(s) 640, 967
MluCI AATT 3 cut(s) 72, 349, 431
MlyI GAGTC 1 cut(s) 968
MnlI CCTC 7 cut(s) 21, 46, 396, 725, 772, 789, 927
MroI TCCGGA 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 786
MslI CAYNNNNRTG 2 cut(s) 338, 616
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 5 cut(s) 29, 357, 393, 515, 930
MspR9I CCNGG 7 cut(s) 102, 246, 357, 393, 451, 659, 930
MvaI CCWGG 4 cut(s) 102, 246, 451, 659
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 8 cut(s) 181, 224, 446, 485, 632, 899, 989, 1040
NciI CCSGG 3 cut(s) 357, 393, 930
NdeI CATATG 1 cut(s) 339
NdeII GATC 4 cut(s) 511, 640, 670, 967
NlaIII CATG 7 cut(s) 271, 364, 403, 465, 584, 606, 725
NmuCI GTSAC 1 cut(s) 921
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 543
PagI TCATGA 1 cut(s) 399
PcsI WCGNNNNNNNCGW 2 cut(s) 774, 855
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 2 cut(s) 143, 307
PfoI TCCNGGA 1 cut(s) 657
PkrI GCNGC 5 cut(s) 273, 813, 904, 907, 1021
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
PshAI GACNNNNGTC 1 cut(s) 592
Psp6I CCWGG 4 cut(s) 100, 244, 449, 657
PspGI CCWGG 4 cut(s) 100, 244, 449, 657
PspPI GGNCC 2 cut(s) 26, 813
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 2 cut(s) 640, 967
RseI CAYNNNNRTG 2 cut(s) 338, 616
Rsr2I CGGWCCG 1 cut(s) 26
RsrII CGGWCCG 1 cut(s) 26
SalI GTCGAC 2 cut(s) 6, 105
SatI GCNGC 5 cut(s) 272, 812, 903, 906, 1020
Sau3AI GATC 4 cut(s) 511, 640, 670, 967
Sau96I GGNCC 2 cut(s) 26, 813
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 7 cut(s) 102, 246, 357, 393, 451, 659, 930
SfaNI GCATC 3 cut(s) 620, 889, 889
SfcI CTRYAG 2 cut(s) 80, 936
SfuI TTCGAA 1 cut(s) 543
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 338, 616
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
Sse9I AATT 3 cut(s) 72, 349, 431
SsiI CCGC 8 cut(s) 24, 154, 272, 536, 811, 891, 902, 1032
SspMI CTAG 4 cut(s) 485, 896, 1008, 1045
StyD4I CCNGG 7 cut(s) 100, 244, 355, 391, 449, 657, 928
TaaI ACNGT 3 cut(s) 594, 940, 1027
TaqI TCGA 5 cut(s) 7, 37, 106, 529, 543
TasI AATT 3 cut(s) 72, 349, 431
TauI GCSGC 3 cut(s) 274, 814, 905
TfiI GAWTC 2 cut(s) 143, 307
TseFI GTSAC 1 cut(s) 921
TseI GCWGC 2 cut(s) 905, 1019
Tsp45I GTSAC 1 cut(s) 921
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 349, 431
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 2 cut(s) 7, 106
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 4 cut(s) 485, 896, 1008, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.