MD03G1236400.v1.1

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012161
Physical Location & Seq
Reverse (-)
32189094 .. 32194714
5621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1236400.v1.1.491

Sequence Viewer

Length: 825 bp
ATGGGTAGGCCTCCGAGCAACGGAGGCCCTACCTTCCGCTTCGTCCAGTCTGAGGTTACGGAGATGGAAGCTATTCTGCAACAATACAATAACACAATGCCATCACGTGAAGTGCTTATGGCCGTTGCGGATAAGTTCAGTGAATCACCGGAGCGAAAGGGCAAGATTACAGTACAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATTAGGGCAAAATCAAGCAAGGTTCTTGGTAAGTTAGACATGTCACCTATGTCTCGCGATGATTCAGCTGCAGCAAGAAATGTTCCTCAAGGCCCTCAGCAGATTGCTGCTCCTGTACATGTTCCTTCTGTTCCAGGATCAGGAAAGGGTGCTTCTGAAAATGCTATCTTTGAGTTTGAAGCTAAATCTGGGAGGGACGGTGCATGGTATGATGTTGCAAACTTTTTATCTCATAAAAATTTGGAGACTGTTAATCCGGAAGTTCTGGTTCGGTTTGCTGGATTTGGACCAGAGGAGGATGAGTGGGTTAATGTACGAAAGCATGTCAGGCAGCGGTCTCTCCCATGTGAATCATCCGAGTGCGTTGCAGTTCTCCCCGGAGATCTCATACTATGCTTTCAGGAAGGTAAAGAGCAGGCTTTGTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGACATGATGTAAGAGGATGTCGATGTAGGTTTCTAGTGCGCTATGTTCATGATCAGTCCGAGTCTCTCTATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGTTATTGCTTGAATTCATTTTAAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

8.19

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 130 - 246 3.1e-42 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 3 cut(s) 37, 128, 553
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 457, 806
AcvI CACGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 174, 336, 534, 644
AfiI CCNNNNNNNGG 3 cut(s) 20, 52, 359
AflIII ACRYGT 2 cut(s) 258, 337
AgsI TTSAA 2 cut(s) 398, 806
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 71, 287, 401
AluI AGCT 3 cut(s) 71, 287, 401
Alw26I GTCTC 4 cut(s) 276, 458, 561, 747
AlwI GGATC 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 4 cut(s) 8, 25, 120, 310
ApeKI GCWGC 4 cut(s) 287, 290, 326, 550
ApoI RAATTY 2 cut(s) 457, 806
Asp700I GAANNNNTTC 2 cut(s) 72, 197
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 3 cut(s) 26, 311, 506
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 2 cut(s) 138, 255
AvaII GGWCC 1 cut(s) 506
BauI CACGAG 1 cut(s) 791
BbrPI CACGTG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 685
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 274, 302, 313, 562
BccI CCATC 2 cut(s) 58, 109
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 4 cut(s) 276, 458, 561, 747
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 601
BisI GCNGC 4 cut(s) 288, 291, 327, 551
BlsI GCNGC 4 cut(s) 289, 292, 328, 552
Bme1390I CCNGG 2 cut(s) 354, 597
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 26, 311, 506
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 354, 597
BmsI GCATC 2 cut(s) 640, 655
BpiI GAAGAC 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 595
BsaWI WCCGGW 2 cut(s) 148, 475
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 52, 359
Bse1I ACTGG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 3 cut(s) 523, 572, 701
BseLI CCNNNNNNNGG 3 cut(s) 20, 52, 359
BseMII CTCAG 2 cut(s) 42, 329
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 527, 779
BseXI GCAGC 4 cut(s) 274, 302, 313, 562
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 10, 27, 122, 312
BsiSI CCGG 3 cut(s) 149, 476, 597
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 3 cut(s) 20, 52, 359
BsmAI GTCTC 4 cut(s) 276, 458, 561, 747
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 4 cut(s) 10, 27, 122, 312
Bso31I GGTCTC 1 cut(s) 561
Bsp13I TCCGGA 1 cut(s) 475
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 356, 601, 730
Bsp68I TCGCGA 1 cut(s) 276
BspACI CCGC 3 cut(s) 37, 128, 553
BspANI GGCC 4 cut(s) 10, 27, 122, 312
BspCNI CTCAG 2 cut(s) 43, 328
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 3 cut(s) 356, 601, 730
BssSI CACGAG 1 cut(s) 791
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 172, 419, 469
BstAUI TGTACA 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 2 cut(s) 51, 315
BstF5I GGATG 3 cut(s) 523, 572, 701
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 3 cut(s) 359, 604, 733
BstMAI GTCTC 4 cut(s) 276, 458, 561, 747
BstMBI GATC 3 cut(s) 356, 601, 730
BstMWI GCNNNNNNNGC 3 cut(s) 24, 224, 547
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 3 cut(s) 262, 341, 545
BstSCI CCNGG 2 cut(s) 352, 595
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 4 cut(s) 274, 302, 313, 562
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 4 cut(s) 10, 27, 122, 312
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 523, 572, 701
BtsIMutI CAGTG 1 cut(s) 145
BtuMI TCGCGA 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 1 cut(s) 727
CfoI GCGC 1 cut(s) 720
Cfr13I GGNCC 3 cut(s) 26, 311, 506
Csp6I GTAC 4 cut(s) 173, 335, 533, 643
CviAII CATG 8 cut(s) 259, 338, 423, 542, 564, 656, 683, 728
CviJI RGCY 8 cut(s) 10, 27, 71, 122, 287, 312, 401, 638
CviKI_1 RGCY 8 cut(s) 10, 27, 71, 122, 287, 312, 401, 638
CviQI GTAC 4 cut(s) 173, 335, 533, 643
DdeI CTNAG 2 cut(s) 51, 315
DpnI GATC 3 cut(s) 358, 603, 732
DpnII GATC 3 cut(s) 356, 601, 730
DraI TTTAAA 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 506
Eco72I CACGTG 1 cut(s) 107
EcoO109I RGGNCCY 2 cut(s) 26, 311
EcoRI GAATTC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 8 cut(s) 262, 341, 426, 545, 567, 659, 686, 731
FaqI GGGAC 1 cut(s) 428
FatI CATG 8 cut(s) 258, 337, 422, 541, 563, 655, 682, 727
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 4 cut(s) 288, 291, 327, 551
FokI GGATG 3 cut(s) 530, 559, 708
Fsp4HI GCNGC 4 cut(s) 288, 291, 327, 551
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 719
GluI GCNGC 4 cut(s) 288, 291, 327, 551
HaeIII GGCC 4 cut(s) 10, 27, 122, 312
HapII CCGG 3 cut(s) 149, 476, 597
HhaI GCGC 1 cut(s) 720
Hin1II CATG 8 cut(s) 262, 341, 426, 545, 567, 659, 686, 731
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HinfI GANTC 4 cut(s) 143, 281, 569, 740
HpaII CCGG 3 cut(s) 149, 476, 597
HphI GGTGA 2 cut(s) 138, 255
Hpy188I TCNGA 5 cut(s) 15, 52, 376, 577, 739
Hpy188III TCNNGA 5 cut(s) 275, 360, 476, 620, 728
HpyAV CCTTC 3 cut(s) 43, 354, 617
HpyCH4III ACNGT 3 cut(s) 172, 419, 469
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 79, 290, 422, 437, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 224, 547
HpyF3I CTNAG 2 cut(s) 51, 315
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 8 cut(s) 262, 341, 426, 545, 567, 659, 686, 731
HspAI GCGC 1 cut(s) 718
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 3 cut(s) 356, 601, 730
LmnI GCTCC 2 cut(s) 151, 334
Lsp1109I GCAGC 4 cut(s) 274, 302, 313, 562
LweI GCATC 2 cut(s) 640, 655
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 55, 261
MalI GATC 3 cut(s) 358, 603, 732
MboI GATC 3 cut(s) 356, 601, 730
MboII GAAGA 1 cut(s) 690
MflI RGATCY 1 cut(s) 601
MluCI AATT 3 cut(s) 193, 457, 806
MlyI GAGTC 1 cut(s) 749
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 2 cut(s) 72, 197
MseI TTAA 3 cut(s) 471, 528, 815
MslI CAYNNNNRTG 1 cut(s) 577
MspA1I CMGCKG 2 cut(s) 287, 553
MspI CCGG 3 cut(s) 149, 476, 597
MspR9I CCNGG 2 cut(s) 354, 597
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 24, 224, 547
NciI CCSGG 1 cut(s) 597
NdeII GATC 3 cut(s) 356, 601, 730
NlaIII CATG 8 cut(s) 262, 341, 426, 545, 567, 659, 686, 731
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 261
NruI TCGCGA 1 cut(s) 276
NspI RCATGY 3 cut(s) 262, 341, 545
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 10
PciI ACATGT 2 cut(s) 258, 337
PdmI GAANNNNTTC 2 cut(s) 72, 197
PfeI GAWTC 3 cut(s) 143, 281, 569
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 4 cut(s) 289, 292, 328, 552
PleI GAGTC 1 cut(s) 748
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 1 cut(s) 748
Ppu21I YACGTR 1 cut(s) 107
PscI ACATGT 2 cut(s) 258, 337
Psp6I CCWGG 1 cut(s) 352
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 26, 311, 506
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 287
RruI TCGCGA 1 cut(s) 276
RsaI GTAC 4 cut(s) 174, 336, 534, 644
RsaNI GTAC 4 cut(s) 173, 335, 533, 643
RseI CAYNNNNRTG 1 cut(s) 577
SaqAI TTAA 3 cut(s) 471, 528, 815
SatI GCNGC 4 cut(s) 288, 291, 327, 551
Sau3AI GATC 3 cut(s) 356, 601, 730
Sau96I GGNCC 3 cut(s) 26, 311, 506
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 2 cut(s) 354, 597
SfaNI GCATC 2 cut(s) 640, 655
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 3 cut(s) 193, 457, 806
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 3 cut(s) 37, 128, 553
SspMI CTAG 1 cut(s) 713
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 352, 595
TaaI ACNGT 3 cut(s) 172, 419, 469
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 700
TasI AATT 3 cut(s) 193, 457, 806
TatI WGTACW 3 cut(s) 172, 334, 642
TfiI GAWTC 3 cut(s) 143, 281, 569
Tru1I TTAA 3 cut(s) 471, 528, 815
Tru9I TTAA 3 cut(s) 471, 528, 815
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 4 cut(s) 287, 290, 326, 550
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 3 cut(s) 194, 716, 799
TspGWI ACGGA 2 cut(s) 36, 74
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 2 cut(s) 457, 806
XceI RCATGY 3 cut(s) 262, 341, 545
XmnI GAANNNNTTC 2 cut(s) 72, 197
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.