RchiOBHm_Chr5g0031921

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012161
Physical Location & Seq
Reverse (-)
25664563 .. 25670373
5811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31113

Sequence Viewer

Length: 1146 bp
ATGGGTAGGCCTCCAAGTAACGGAGGCCCTTCATTCCGCTTCAATCAGACTGAGGTTGCTGAGATGGAAACTATTCTGCATCAACACAATAATACAATGCCAGCACGGGAACTTCTAGTGGCCCTTGCAGAGAAGTTCAGTGAAACAGCAGAGCGAAAAGGCAAATTTCAAGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATTAGAGCAAAATCAAGTAAGGTTCTTGGGAAGTTAAATGTGTCACCTATGATGCCTCGGGTGGATTCAACTCCAGTGAGAACTGTTCCTCAAGGCCCCCAACCTATAGCTGCTCCTATACATGCTCCTTCAGTTCCAAGCTCAGCAAGGGGTGCTTCTGAAAATCCTATCTTGGAGTTTGAAGCTAAATCTGGAAGGGATGCTGCATGGTATGATGTTGCTAACTTTTTATCTCATAGACATTTGGAGAGTGGTGATCCGGACGTACTGGTTCGGTTTGCTGGATTCGGACCAGAGGAGGATGAGTGGGTTAATGTTCGGAAGCATGTCAGGCAGCGGTCTCTTCCATGTGAATCATCGGAGTGTGTTGCAGTTCTCCCTGGAGACCTCATACTTTGTTTTCAGGAAGGTAAAGAGCAGGCTTTGTATTTTGATGCCAATGTCCTTGATGCTCAAAGACGAAGACATGATGTAAGAGGTTGTCGTTGTAGGTTTTTAGTGCGCTATGTTCACGATCAGTCCGAGGAAATTGTTCCACTGAGGAAGGTTTGCCGTCGGCCTGAAACGGATTACAGGTTGCATCAACTTCATGCTGAAAACAACACAACAGCAGCGGAGCAGAAAAGTATGGATCATTTTAAGGTGCCTGCTACTTCTGCTGAAATGATACAAAAGCAGCAGAATGCAGATGCCGCGTTTGCGTCCCCAGTTTTTCATGCTAATGCTTCTTTTGCTCCCCAAGCTTCAACTCCGGAACTTAGAAAACCCGAAATGAGCATTGTTCTTAGTGCAGGAAATACTTGTGGTCCATCAGGTAGTGCTGGAGTCACTAGTGGTAGTGCTACAAGTTGTGCTGTACTCACAAGCTGCACTGCTACAGTCCTCCCTCATGGCGGTTCCGTTGGGAACATACCTGGAGGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

381

Amino Acids

41.86

Weight (kDa)

8.35

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 131 - 257 2.1e-43 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 862
AccII CGCG 1 cut(s) 914
AccIII TCCGGA 2 cut(s) 478, 970
AciI CCGC 5 cut(s) 37, 556, 833, 912, 1113
AclWI GGATC 2 cut(s) 470, 858
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 2 cut(s) 486, 1077
AfiI CCNNNNNNNGG 2 cut(s) 20, 1112
AgsI TTSAA 5 cut(s) 43, 170, 288, 401, 966
AhlI ACTAGT 1 cut(s) 1049
AjnI CCWGG 2 cut(s) 598, 1132
AluBI AGCT 5 cut(s) 329, 360, 404, 962, 1086
AluI AGCT 5 cut(s) 329, 360, 404, 962, 1086
Alw26I GTCTC 2 cut(s) 564, 597
AlwI GGATC 2 cut(s) 470, 858
Ama87I CYCGRG 1 cut(s) 276
Aor13HI TCCGGA 2 cut(s) 478, 970
AoxI GGCC 5 cut(s) 8, 25, 120, 313, 776
ApeKI GCWGC 6 cut(s) 329, 422, 553, 830, 895, 1086
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 3 cut(s) 72, 197, 750
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 5 cut(s) 26, 121, 314, 509, 1025
AsuHPI GGTGA 2 cut(s) 255, 485
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 2 cut(s) 509, 1025
BanI GGYRCC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 688
BbvI GCAGC 6 cut(s) 316, 409, 565, 842, 907, 1073
BccI CCATC 2 cut(s) 58, 1036
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 2 cut(s) 600, 1134
BcoDI GTCTC 2 cut(s) 564, 597
BcuI ACTAGT 1 cut(s) 1049
BfaI CTAG 2 cut(s) 116, 1050
BfmI CTRYAG 2 cut(s) 324, 1095
BisI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 7 cut(s) 331, 424, 555, 832, 897, 913, 1088
Bme1390I CCNGG 2 cut(s) 600, 1134
Bme18I GGWCC 2 cut(s) 509, 1025
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 5 cut(s) 26, 121, 314, 509, 1025
BmiI GGNNCC 4 cut(s) 200, 316, 864, 1117
BmrFI CCNGG 2 cut(s) 600, 1134
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 3 cut(s) 276, 621, 1062
Bpu1102I GCTNAGC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 564, 597
BsaJI CCNNGG 3 cut(s) 275, 598, 741
BsaWI WCCGGW 2 cut(s) 478, 970
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1112
Bse1I ACTGG 3 cut(s) 293, 492, 926
BseAI TCCGGA 2 cut(s) 478, 970
BseBI CCWGG 2 cut(s) 600, 1134
BseDI CCNNGG 3 cut(s) 275, 598, 741
BseGI GGATG 2 cut(s) 424, 526
BseLI CCNNNNNNNGG 2 cut(s) 20, 1112
BseMII CTCAG 4 cut(s) 42, 51, 375, 749
BseNI ACTGG 3 cut(s) 293, 492, 926
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 6 cut(s) 316, 409, 565, 842, 907, 1073
BsgI GTGCAG 2 cut(s) 1029, 1072
Bsh1236I CGCG 1 cut(s) 914
BshFI GGCC 5 cut(s) 10, 27, 122, 315, 778
BshNI GGYRCC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 2 cut(s) 479, 971
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 2 cut(s) 20, 1112
BsmAI GTCTC 2 cut(s) 564, 597
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 5 cut(s) 10, 27, 122, 315, 778
Bso31I GGTCTC 2 cut(s) 564, 597
BsoBI CYCGRG 1 cut(s) 276
Bsp13I TCCGGA 2 cut(s) 478, 970
Bsp143I GATC 3 cut(s) 475, 733, 850
Bsp1720I GCTNAGC 1 cut(s) 361
BspACI CCGC 5 cut(s) 37, 556, 833, 912, 1113
BspANI GGCC 5 cut(s) 10, 27, 122, 315, 778
BspCNI CTCAG 4 cut(s) 43, 52, 374, 750
BspEI TCCGGA 2 cut(s) 478, 970
BspFNI CGCG 1 cut(s) 914
BspLI GGNNCC 4 cut(s) 200, 316, 864, 1117
BspPI GGATC 2 cut(s) 470, 858
BspT107I GGYRCC 1 cut(s) 862
BspTNI GGTCTC 2 cut(s) 564, 597
BsrI ACTGG 3 cut(s) 293, 492, 926
BssECI CCNNGG 3 cut(s) 275, 598, 741
BssMI GATC 3 cut(s) 475, 733, 850
Bst2UI CCWGG 2 cut(s) 600, 1134
Bst4CI ACNGT 2 cut(s) 304, 1099
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 3 cut(s) 102, 639, 867
BstDEI CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
BstF5I GGATG 2 cut(s) 424, 526
BstFNI CGCG 1 cut(s) 914
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 3 cut(s) 478, 736, 853
BstMAI GTCTC 2 cut(s) 564, 597
BstMBI GATC 3 cut(s) 475, 733, 850
BstMWI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
BstNI CCWGG 2 cut(s) 600, 1134
BstNSI RCATGY 2 cut(s) 344, 548
BstSCI CCNGG 2 cut(s) 598, 1132
BstSFI CTRYAG 2 cut(s) 324, 1095
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 6 cut(s) 316, 409, 565, 842, 907, 1073
BstV2I GAAGAC 1 cut(s) 688
BsuRI GGCC 5 cut(s) 10, 27, 122, 315, 778
BtsCI GGATG 2 cut(s) 424, 526
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 4 cut(s) 145, 300, 755, 1089
Cac8I GCNNGC 3 cut(s) 102, 639, 867
CfoI GCGC 1 cut(s) 723
Cfr13I GGNCC 5 cut(s) 26, 121, 314, 509, 1025
CseI GACGC 1 cut(s) 909
Csp6I GTAC 2 cut(s) 485, 1076
CviAII CATG 8 cut(s) 341, 426, 545, 567, 686, 809, 935, 1109
CviQI GTAC 2 cut(s) 485, 1076
DdeI CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
DpnI GATC 3 cut(s) 477, 735, 852
DpnII GATC 3 cut(s) 475, 733, 850
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 2 cut(s) 564, 597
Eco47I GGWCC 2 cut(s) 509, 1025
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 2 cut(s) 26, 314
EcoRII CCWGG 2 cut(s) 598, 1132
FaeI CATG 8 cut(s) 344, 429, 548, 570, 689, 812, 938, 1112
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FaqI GGGAC 1 cut(s) 907
FatI CATG 8 cut(s) 340, 425, 544, 566, 685, 808, 934, 1108
Fnu4HI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
FokI GGATG 2 cut(s) 431, 533
Fsp4HI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
FspBI CTAG 2 cut(s) 116, 1050
GlaI GCGC 1 cut(s) 722
GluI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
GsuI CTGGAG 3 cut(s) 276, 621, 1062
HaeIII GGCC 5 cut(s) 10, 27, 122, 315, 778
HapII CCGG 2 cut(s) 479, 971
HgaI GACGC 1 cut(s) 909
HhaI GCGC 1 cut(s) 723
Hin1II CATG 8 cut(s) 344, 429, 548, 570, 689, 812, 938, 1112
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 4 cut(s) 284, 504, 572, 1044
HpaII CCGG 2 cut(s) 479, 971
HphI GGTGA 2 cut(s) 255, 485
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 6 cut(s) 48, 379, 509, 540, 580, 742
Hpy188III TCNNGA 5 cut(s) 411, 479, 623, 731, 971
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 5 cut(s) 39, 357, 408, 620, 757
HpyCH4III ACNGT 2 cut(s) 304, 1099
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 9 cut(s) 79, 128, 175, 425, 590, 799, 905, 1010, 1089
HpyF10VI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
HpyF3I CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 8 cut(s) 344, 429, 548, 570, 689, 812, 938, 1112
HspAI GCGC 1 cut(s) 721
Kpn2I TCCGGA 2 cut(s) 478, 970
Kzo9I GATC 3 cut(s) 475, 733, 850
LmnI GCTCC 4 cut(s) 337, 349, 835, 958
Lsp1109I GCAGC 6 cut(s) 316, 409, 565, 842, 907, 1073
LweI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
MaeI CTAG 2 cut(s) 116, 1050
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 17, 261, 1045
MalI GATC 3 cut(s) 477, 735, 852
MboI GATC 3 cut(s) 475, 733, 850
MboII GAAGA 2 cut(s) 554, 693
MluCI AATT 4 cut(s) 164, 193, 747, 1141
MlyI GAGTC 1 cut(s) 1053
MroI TCCGGA 2 cut(s) 478, 970
MroXI GAANNNNTTC 3 cut(s) 72, 197, 750
MseI TTAA 3 cut(s) 254, 531, 858
MslI CAYNNNNRTG 2 cut(s) 580, 939
MspA1I CMGCKG 2 cut(s) 556, 833
MspI CCGG 2 cut(s) 479, 971
MspR9I CCNGG 2 cut(s) 600, 1134
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 600, 1134
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
NdeII GATC 3 cut(s) 475, 733, 850
NlaIII CATG 8 cut(s) 344, 429, 548, 570, 689, 812, 938, 1112
NlaIV GGNNCC 4 cut(s) 200, 316, 864, 1117
NmuCI GTSAC 2 cut(s) 261, 1045
NspI RCATGY 2 cut(s) 344, 548
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PctI GAATGC 1 cut(s) 907
PdmI GAANNNNTTC 3 cut(s) 72, 197, 750
PfeI GAWTC 3 cut(s) 284, 504, 572
PkrI GCNGC 7 cut(s) 331, 424, 555, 832, 897, 913, 1088
PleI GAGTC 1 cut(s) 1052
PpsI GAGTC 1 cut(s) 1052
Psp6I CCWGG 2 cut(s) 598, 1132
PspGI CCWGG 2 cut(s) 598, 1132
PspN4I GGNNCC 4 cut(s) 200, 316, 864, 1117
PspPI GGNCC 5 cut(s) 26, 121, 314, 509, 1025
RsaI GTAC 2 cut(s) 486, 1077
RsaNI GTAC 2 cut(s) 485, 1076
RseI CAYNNNNRTG 2 cut(s) 580, 939
SaqAI TTAA 3 cut(s) 254, 531, 858
SatI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
Sau3AI GATC 3 cut(s) 475, 733, 850
Sau96I GGNCC 5 cut(s) 26, 121, 314, 509, 1025
SchI GAGTC 1 cut(s) 1053
ScrFI CCNGG 2 cut(s) 600, 1134
SfaNI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
SfcI CTRYAG 2 cut(s) 324, 1095
SinI GGWCC 2 cut(s) 509, 1025
SmiMI CAYNNNNRTG 2 cut(s) 580, 939
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SpeI ACTAGT 1 cut(s) 1049
Sse9I AATT 4 cut(s) 164, 193, 747, 1141
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 5 cut(s) 37, 556, 833, 912, 1113
SspMI CTAG 2 cut(s) 116, 1050
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 598, 1132
TaaI ACNGT 2 cut(s) 304, 1099
TaiI ACGT 1 cut(s) 486
TasI AATT 4 cut(s) 164, 193, 747, 1141
TatI WGTACW 1 cut(s) 1075
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 3 cut(s) 284, 504, 572
Tru1I TTAA 3 cut(s) 254, 531, 858
Tru9I TTAA 3 cut(s) 254, 531, 858
TscAI CASTG 4 cut(s) 145, 300, 762, 1096
TseFI GTSAC 2 cut(s) 261, 1045
TseI GCWGC 6 cut(s) 329, 422, 553, 830, 895, 1086
Tsp45I GTSAC 2 cut(s) 261, 1045
TspDTI ATGAA 4 cut(s) 21, 194, 797, 923
TspGWI ACGGA 3 cut(s) 36, 800, 1108
TspRI CASTG 4 cut(s) 145, 300, 762, 1096
VpaK11BI GGWCC 2 cut(s) 509, 1025
XapI RAATTY 1 cut(s) 164
XceI RCATGY 2 cut(s) 344, 548
XmnI GAANNNNTTC 3 cut(s) 72, 197, 750
XspI CTAG 2 cut(s) 116, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.