Rorug05G0129200

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012161
Physical Location & Seq
Reverse (-)
11486885 .. 11488067
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0129200.1

Sequence Viewer

Length: 825 bp
ATGGGTGTTTCACCCCCCATTCACCATTGGATTTTTTCTTTGCTATTGGCTTTTGTCCCATTTTGGTGGCTTCGGTTCCTTCCCGGTTTGAGTTTTTCTGGTGGAGAAGAGAGCGTTTGTGTCTGGGTTTGGATCCAATTTATCATCTCATTACCTTGGTTTCGATTGGATTTGTATTTTGGGATTGTTTTGGCTGCGGTTATTCAGATTTTATCTCCTCGGTATGGCACTTTTCCCTACCTTTTGGCTCCGGGCAGCGGCGGCTGCGGCGTCGACGGCACGGATGGCTCGGGTGGCGGCTGTTGCATTGTAGGAGATGATATGGAATTTGAAGCTATGAGAGCAGGACTCTTACTTCTCATTCACCAAGATATGGATAACGTGGACATTGAAACGGACTGTACTATGGTGATTGATGCACTTGATAGTGACACAGAAGATTTATCTGAGGTAGGATGTATTGTAGAGGATTGTAAAGCTTATTTGCGTTCAATTCCTTCTTCATCACTCTGCTCTATTTATCGTGAAGCAAATGATGTGGCACATAGATTGGCCCATCTTGCTAGTGTTGATTACTTAGATGATTATTGGTTAGATGAGACACATGTGATTATCCAGGATGTTCTCTATGAGGATGCTTGTACTAGTACTCAAGGTTTAGGTAATATGTCCCCCTCGCTGTACAATTATCCATATATTATTAATAATAATCCGGGCGTGGGGCTGAGCCTCCCAGTTAGGCTGGATTCCAAACCCCGTTTCAAAAAAAAAAAAAAAACTACAGTTGCTCACTTGCTTGGACGCGCGATTCAAGTGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

274

Amino Acids

30.39

Weight (kDa)

4.67

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 109 - 187 1.7e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 804, 806
AciI CCGC 5 cut(s) 197, 258, 261, 267, 297
AclWI GGATC 2 cut(s) 127, 140
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 4 cut(s) 403, 643, 649, 683
AfiI CCNNNNNNNGG 4 cut(s) 224, 257, 373, 719
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 5 cut(s) 332, 392, 492, 763, 812
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AluBI AGCT 2 cut(s) 335, 479
AluI AGCT 2 cut(s) 335, 479
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 127, 140
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 3 cut(s) 194, 255, 264
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 702
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 1 cut(s) 553
AsuC2I CCSGG 3 cut(s) 84, 252, 714
AsuHPI GGTGA 4 cut(s) 3, 14, 356, 421
AvaI CYCGRG 1 cut(s) 289
BamHI GGATCC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 181, 251, 267
BccI CCATC 2 cut(s) 278, 564
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 617
BcnI CCSGG 3 cut(s) 84, 252, 714
BcoDI GTCTC 1 cut(s) 593
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 2 cut(s) 564, 645
BfmI CTRYAG 1 cut(s) 780
BisI GCNGC 7 cut(s) 195, 256, 259, 262, 265, 268, 298
BlpI GCTNAGC 1 cut(s) 725
BlsI GCNGC 7 cut(s) 196, 257, 260, 263, 266, 269, 299
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 4 cut(s) 84, 252, 617, 714
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 3 cut(s) 77, 134, 249
BmrFI CCNGG 4 cut(s) 84, 252, 617, 714
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 2 cut(s) 406, 625
BmuI ACTGGG 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 333, 365
Bpu1102I GCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 636
BpuMI CCSGG 3 cut(s) 84, 252, 714
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 155, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 257, 373, 719
Bse1I ACTGG 1 cut(s) 734
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 155, 218
BseGI GGATG 4 cut(s) 289, 461, 625, 640
BseLI CCNNNNNNNGG 4 cut(s) 224, 257, 373, 719
BseMII CTCAG 2 cut(s) 438, 716
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 181, 251, 267
Bsh1236I CGCG 2 cut(s) 804, 806
BshFI GGCC 1 cut(s) 554
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 3 cut(s) 84, 251, 713
BslFI GGGAC 2 cut(s) 41, 655
BslI CCNNNNNNNGG 4 cut(s) 224, 257, 373, 719
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 2 cut(s) 41, 655
BsnI GGCC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 725
BspACI CCGC 5 cut(s) 197, 258, 261, 267, 297
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 2 cut(s) 439, 717
BspFNI CGCG 2 cut(s) 804, 806
BspLI GGNNCC 3 cut(s) 77, 134, 249
BspPI GGATC 2 cut(s) 127, 140
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 155, 218
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 2 cut(s) 401, 784
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 681
BstDEI CTNAG 3 cut(s) 447, 577, 725
BstF5I GGATG 4 cut(s) 289, 461, 625, 640
BstFNI CGCG 2 cut(s) 804, 806
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 9 cut(s) 261, 264, 267, 276, 285, 294, 303, 341, 560
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 82, 250, 615, 712
BstSFI CTRYAG 1 cut(s) 780
BstUI CGCG 2 cut(s) 804, 806
BstV1I GCAGC 3 cut(s) 181, 251, 267
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 66
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 4 cut(s) 289, 461, 625, 640
CfoI GCGC 1 cut(s) 806
Cfr13I GGNCC 1 cut(s) 553
CseI GACGC 2 cut(s) 259, 810
Csp6I GTAC 4 cut(s) 402, 642, 648, 682
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 1 cut(s) 605
CviQI GTAC 4 cut(s) 402, 642, 648, 682
DdeI CTNAG 3 cut(s) 447, 577, 725
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 608
FaqI GGGAC 2 cut(s) 41, 655
FatI CATG 1 cut(s) 604
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 7 cut(s) 195, 256, 259, 262, 265, 268, 298
FokI GGATG 4 cut(s) 296, 468, 632, 647
Fsp4HI GCNGC 7 cut(s) 195, 256, 259, 262, 265, 268, 298
FspBI CTAG 2 cut(s) 564, 645
GlaI GCGC 1 cut(s) 805
GluI GCNGC 7 cut(s) 195, 256, 259, 262, 265, 268, 298
HaeIII GGCC 1 cut(s) 554
HapII CCGG 3 cut(s) 84, 251, 713
HgaI GACGC 2 cut(s) 259, 810
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 608
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 3 cut(s) 348, 746, 808
HpaII CCGG 3 cut(s) 84, 251, 713
HphI GGTGA 4 cut(s) 3, 14, 356, 421
Hpy166II GTNNAC 2 cut(s) 274, 385
Hpy188I TCNGA 2 cut(s) 207, 448
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 2 cut(s) 274, 385
Hpy99I CGWCG 2 cut(s) 275, 278
HpyAV CCTTC 3 cut(s) 89, 507, 811
HpyCH4III ACNGT 2 cut(s) 401, 784
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 306, 419
HpyF10VI GCNNNNNNNGC 9 cut(s) 261, 264, 267, 276, 285, 294, 303, 341, 560
HpyF3I CTNAG 3 cut(s) 447, 577, 725
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 608
HspAI GCGC 1 cut(s) 804
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 181, 251, 267
LweI GCATC 2 cut(s) 406, 625
MaeI CTAG 2 cut(s) 564, 645
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 119, 449, 492
MflI RGATCY 1 cut(s) 132
MluCI AATT 4 cut(s) 137, 326, 492, 685
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 6 cut(s) 228, 442, 460, 625, 685, 740
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 3 cut(s) 84, 251, 713
MspR9I CCNGG 4 cut(s) 84, 252, 617, 714
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 2 cut(s) 804, 806
MwoI GCNNNNNNNGC 9 cut(s) 261, 264, 267, 276, 285, 294, 303, 341, 560
NciI CCSGG 3 cut(s) 84, 252, 714
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 608
NlaIV GGNNCC 3 cut(s) 77, 134, 249
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 608
PciI ACATGT 1 cut(s) 604
PfeI GAWTC 2 cut(s) 746, 808
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 7 cut(s) 196, 257, 260, 263, 266, 269, 299
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PscI ACATGT 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 3 cut(s) 77, 134, 249
PspPI GGNCC 1 cut(s) 553
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 4 cut(s) 403, 643, 649, 683
RsaNI GTAC 4 cut(s) 402, 642, 648, 682
RseI CAYNNNNRTG 1 cut(s) 64
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 7 cut(s) 195, 256, 259, 262, 265, 268, 298
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 553
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 4 cut(s) 84, 252, 617, 714
SetI ASST 8 cut(s) 157, 243, 337, 384, 453, 481, 658, 664
SfaNI GCATC 2 cut(s) 406, 625
SfcI CTRYAG 1 cut(s) 780
SgrDI CGTCGACG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 4 cut(s) 137, 326, 492, 685
SsiI CCGC 5 cut(s) 197, 258, 261, 267, 297
SspMI CTAG 2 cut(s) 564, 645
StyD4I CCNGG 4 cut(s) 82, 250, 615, 712
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 401, 784
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 163, 273
TasI AATT 4 cut(s) 137, 326, 492, 685
TatI WGTACW 4 cut(s) 401, 641, 647, 681
TauI GCSGC 4 cut(s) 261, 264, 270, 300
TfiI GAWTC 2 cut(s) 746, 808
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 3 cut(s) 194, 255, 264
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 492
TspGWI ACGGA 2 cut(s) 296, 410
Van91I CCANNNNNTGG 1 cut(s) 373
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 2 cut(s) 564, 645
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.