FvH4_3g19120

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012161
Physical Location & Seq
Reverse (-)
12318364 .. 12323870
5507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19120.t1

Sequence Viewer

Length: 1113 bp
ATGGGAAGGCCTCCAAGTAACGGAGGCCCTTCATTCCGCTTCAATCAGGCTGAGGTTGCTGAGATGGAAGCTATTTTGCATCAACACAATAATACAATGCCAACACGCGAACTTCTAATGGACCTTGCACAGAAGTTCAGTGAAACAGCAGAGCGAAAAGGCAAATTTCAAGTGCAAATGAAGCAAGTTTGGAATTGGTTTCAAAATAGGCGATATGCTATTAGAGCAAAATCAAGTAAGGTTCTTGGGAAGTTAAATGTTTCACCTATGCCTCGAGTGGAATCAACTCCAGTGAGAACTATTCCTCAAGGCCCCCAACCTATAGCTGCTTCTATACATGCTCCTTCAGTTCCAAGCTCAGCAAGGGTTCCTTCTGAAAATCCTATCTTGGAGTTTGAAGCTAAATCCGGAAGGGATGCTGCATGGTATGATGTTGCAAACTTTTTGTCTCATAGATCTTTGGAGAGTGGTGATCCGGACGTGCTGGTGCGTTTTGCTGGATTCGGACCAGAGGAGGATGAGTGGGTTAATGTCCGAAAGCATGTGAGGCAGCGCTCTCTTCCATGTGAATCATCAGAGTGTGTTGCAGTTCTCCCTGGAGACCTCATACTCTGTTTTCAGGAAGGTAAAGAGCAGGCTTTGTATTTTGATGCCAATGTCCTCGATGCTCAAAGACGAAGACATGATGTAAGAGGTTGTCGTTGTAGGTTTTTAGTGCGCTATGTTCACGATCAGTCCGAGGAAATTGTTCCACTGAGGAAGGTTTGCCGTCGGCCTGAAACGGATTACCGGTTGCATCAGCTTCATGCTGAAAACAATACAACAGCAGCAGAGCAGAAAAGTACAGATCATTTTAAGGTGCCTTCTACTTCTGCTGAAATGATACAAAAGCAGCACAATCCAGTTTTTCATGTTAATGCTTCTGTCGCTCCCCAATCTTCAACTCCTGAACTTAGAAAACCCGAGATGAGCATTGCTATGAGTGCAGGAAATACTAGTGGTCTTCCTGGTAGTGGTGGAGTCGCCAGTGGTAGTGCTCCTGTACTCACAAGCTGTACTGCTACGGTCATCTCTCATGGTGGTTCTGTTGGGAACATGCCAGGAGGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

371

Amino Acids

40.87

Weight (kDa)

8.65

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 130 - 256 1.6e-43 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 2 cut(s) 407, 475
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 467
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 844, 1044, 1057
AfeI AGCGCT 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 20, 1013
AgeI ACCGGT 1 cut(s) 789
AgsI TTSAA 5 cut(s) 43, 170, 203, 398, 942
AhlI ACTAGT 1 cut(s) 995
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 3 cut(s) 595, 1006, 1099
AluBI AGCT 6 cut(s) 71, 326, 357, 401, 802, 1053
AluI AGCT 6 cut(s) 71, 326, 357, 401, 802, 1053
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 2 cut(s) 453, 594
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 2 cut(s) 273, 962
Aor13HI TCCGGA 2 cut(s) 407, 475
Aor51HI AGCGCT 1 cut(s) 554
AoxI GGCC 4 cut(s) 8, 25, 310, 773
ApeKI GCWGC 5 cut(s) 326, 419, 550, 827, 892
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AsiGI ACCGGT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 2 cut(s) 555, 720
AspS9I GGNCC 4 cut(s) 26, 121, 311, 506
AsuHPI GGTGA 2 cut(s) 255, 482
AvaI CYCGRG 2 cut(s) 273, 962
AvaII GGWCC 2 cut(s) 121, 506
BanI GGYRCC 1 cut(s) 859
BbsI GAAGAC 2 cut(s) 685, 995
Bbv12I GWGCWC 1 cut(s) 1039
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 5 cut(s) 313, 406, 562, 839, 904
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 753
BciT130I CCWGG 3 cut(s) 597, 1008, 1101
BcoDI GTCTC 2 cut(s) 453, 594
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 1 cut(s) 996
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 556
BglII AGATCT 1 cut(s) 455
BisI GCNGC 5 cut(s) 327, 420, 551, 828, 893
BlpI GCTNAGC 1 cut(s) 358
BlsI GCNGC 5 cut(s) 328, 421, 552, 829, 894
Bme1390I CCNGG 3 cut(s) 597, 1008, 1101
Bme18I GGWCC 2 cut(s) 121, 506
BmeT110I CYCGRG 2 cut(s) 273, 962
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 26, 121, 311, 506
BmiI GGNNCC 3 cut(s) 313, 369, 861
BmrFI CCNGG 3 cut(s) 597, 1008, 1101
BmsI GCATC 5 cut(s) 88, 406, 640, 655, 805
BpiI GAAGAC 2 cut(s) 685, 995
BpmI CTGGAG 2 cut(s) 273, 618
Bpu10I CCTNAGC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 595, 738
BsaWI WCCGGW 3 cut(s) 407, 475, 789
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1013
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 3 cut(s) 290, 902, 1026
Bse3DI GCAATG 1 cut(s) 972
BseAI TCCGGA 2 cut(s) 407, 475
BseBI CCWGG 3 cut(s) 597, 1008, 1101
BseDI CCNNGG 2 cut(s) 595, 738
BseGI GGATG 2 cut(s) 421, 523
BseLI CCNNNNNNNGG 2 cut(s) 20, 1013
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 4 cut(s) 42, 51, 372, 746
BseNI ACTGG 3 cut(s) 290, 902, 1026
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 5 cut(s) 313, 406, 562, 839, 904
BsgI GTGCAG 1 cut(s) 1005
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 4 cut(s) 10, 27, 312, 775
BshNI GGYRCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 1039
BsiHKCI CYCGRG 2 cut(s) 273, 962
BsiSI CCGG 3 cut(s) 408, 476, 790
BslI CCNNNNNNNGG 2 cut(s) 20, 1013
BsmAI GTCTC 2 cut(s) 453, 594
BsnI GGCC 4 cut(s) 10, 27, 312, 775
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 2 cut(s) 273, 962
Bsp1286I GDGCHC 1 cut(s) 1039
Bsp13I TCCGGA 2 cut(s) 407, 475
Bsp143I GATC 4 cut(s) 455, 472, 730, 847
Bsp1720I GCTNAGC 1 cut(s) 358
BspACI CCGC 1 cut(s) 37
BspANI GGCC 4 cut(s) 10, 27, 312, 775
BspCNI CTCAG 4 cut(s) 43, 52, 371, 747
BspEI TCCGGA 2 cut(s) 407, 475
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 313, 369, 861
BspPI GGATC 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 972
BsrFI RCCGGY 1 cut(s) 789
BsrI ACTGG 3 cut(s) 290, 902, 1026
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 2 cut(s) 595, 738
BssMI GATC 4 cut(s) 455, 472, 730, 847
Bst2UI CCWGG 3 cut(s) 597, 1008, 1101
Bst4CI ACNGT 1 cut(s) 1066
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 5 cut(s) 51, 60, 358, 755, 953
BstF5I GGATG 2 cut(s) 421, 523
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 2 cut(s) 555, 720
BstKTI GATC 4 cut(s) 458, 475, 733, 850
BstMAI GTCTC 2 cut(s) 453, 594
BstMBI GATC 4 cut(s) 455, 472, 730, 847
BstMWI GCNNNNNNNGC 6 cut(s) 56, 181, 224, 547, 926, 983
BstNI CCWGG 3 cut(s) 597, 1008, 1101
BstNSI RCATGY 3 cut(s) 341, 545, 1099
BstSCI CCNGG 3 cut(s) 595, 1006, 1099
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 5 cut(s) 313, 406, 562, 839, 904
BstV2I GAAGAC 2 cut(s) 685, 995
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 4 cut(s) 10, 27, 312, 775
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 2 cut(s) 421, 523
BtsIMutI CAGTG 4 cut(s) 145, 297, 752, 1033
Cac8I GCNNGC 1 cut(s) 636
CfoI GCGC 2 cut(s) 555, 720
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 4 cut(s) 26, 121, 311, 506
Csp6I GTAC 3 cut(s) 843, 1043, 1056
CspAI ACCGGT 1 cut(s) 789
CviAII CATG 9 cut(s) 338, 423, 542, 564, 683, 806, 911, 1076, 1096
CviQI GTAC 3 cut(s) 843, 1043, 1056
DdeI CTNAG 5 cut(s) 51, 60, 358, 755, 953
DpnI GATC 4 cut(s) 457, 474, 732, 849
DpnII GATC 4 cut(s) 455, 472, 730, 847
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 121, 506
Eco47III AGCGCT 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 2 cut(s) 273, 962
EcoO109I RGGNCCY 2 cut(s) 26, 311
EcoRII CCWGG 3 cut(s) 595, 1006, 1099
FaeI CATG 9 cut(s) 341, 426, 545, 567, 686, 809, 914, 1079, 1099
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 9 cut(s) 337, 422, 541, 563, 682, 805, 910, 1075, 1095
Fnu4HI GCNGC 5 cut(s) 327, 420, 551, 828, 893
FokI GGATG 2 cut(s) 428, 530
Fsp4HI GCNGC 5 cut(s) 327, 420, 551, 828, 893
FspBI CTAG 1 cut(s) 996
GlaI GCGC 2 cut(s) 554, 719
GluI GCNGC 5 cut(s) 327, 420, 551, 828, 893
GsuI CTGGAG 2 cut(s) 273, 618
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 4 cut(s) 10, 27, 312, 775
HapII CCGG 3 cut(s) 408, 476, 790
HhaI GCGC 2 cut(s) 555, 720
Hin1II CATG 9 cut(s) 341, 426, 545, 567, 686, 809, 914, 1079, 1099
Hin6I GCGC 2 cut(s) 553, 718
HinP1I GCGC 2 cut(s) 553, 718
HinfI GANTC 4 cut(s) 281, 501, 569, 1020
HpaII CCGG 3 cut(s) 408, 476, 790
HphI GGTGA 2 cut(s) 255, 482
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 5 cut(s) 376, 506, 536, 577, 739
Hpy188III TCNNGA 5 cut(s) 408, 476, 620, 728, 947
Hpy8I GTNNAC 1 cut(s) 727
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 7 cut(s) 39, 354, 381, 405, 617, 754, 873
HpyCH4III ACNGT 1 cut(s) 1066
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 8 cut(s) 79, 128, 175, 422, 437, 587, 796, 986
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 181, 224, 547, 926, 983
HpyF3I CTNAG 5 cut(s) 51, 60, 358, 755, 953
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 9 cut(s) 341, 426, 545, 567, 686, 809, 914, 1079, 1099
HspAI GCGC 2 cut(s) 553, 718
Kpn2I TCCGGA 2 cut(s) 407, 475
Kzo9I GATC 4 cut(s) 455, 472, 730, 847
LmnI GCTCC 3 cut(s) 346, 934, 1042
Lsp1109I GCAGC 5 cut(s) 313, 406, 562, 839, 904
LweI GCATC 5 cut(s) 88, 406, 640, 655, 805
MaeI CTAG 1 cut(s) 996
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 17
MalI GATC 4 cut(s) 457, 474, 732, 849
MboI GATC 4 cut(s) 455, 472, 730, 847
MboII GAAGA 4 cut(s) 551, 690, 930, 995
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 1039
MluCI AATT 4 cut(s) 164, 193, 744, 1108
MlyI GAGTC 1 cut(s) 1029
MroI TCCGGA 2 cut(s) 407, 475
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 4 cut(s) 254, 528, 855, 915
MslI CAYNNNNRTG 3 cut(s) 577, 915, 977
MspI CCGG 3 cut(s) 408, 476, 790
MspR9I CCNGG 3 cut(s) 597, 1008, 1101
MvaI CCWGG 3 cut(s) 597, 1008, 1101
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 6 cut(s) 56, 181, 224, 547, 926, 983
NdeII GATC 4 cut(s) 455, 472, 730, 847
NlaIII CATG 9 cut(s) 341, 426, 545, 567, 686, 809, 914, 1079, 1099
NlaIV GGNNCC 3 cut(s) 313, 369, 861
NspI RCATGY 3 cut(s) 341, 545, 1099
PaeR7I CTCGAG 1 cut(s) 273
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 3 cut(s) 281, 501, 569
PinAI ACCGGT 1 cut(s) 789
PkrI GCNGC 5 cut(s) 328, 421, 552, 829, 894
PleI GAGTC 1 cut(s) 1028
PpsI GAGTC 1 cut(s) 1028
Psp6I CCWGG 3 cut(s) 595, 1006, 1099
PspGI CCWGG 3 cut(s) 595, 1006, 1099
PspN4I GGNNCC 3 cut(s) 313, 369, 861
PspPI GGNCC 4 cut(s) 26, 121, 311, 506
PspXI VCTCGAGB 1 cut(s) 273
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 3 cut(s) 844, 1044, 1057
RsaNI GTAC 3 cut(s) 843, 1043, 1056
RseI CAYNNNNRTG 3 cut(s) 577, 915, 977
SaqAI TTAA 4 cut(s) 254, 528, 855, 915
SatI GCNGC 5 cut(s) 327, 420, 551, 828, 893
Sau3AI GATC 4 cut(s) 455, 472, 730, 847
Sau96I GGNCC 4 cut(s) 26, 121, 311, 506
SchI GAGTC 1 cut(s) 1029
ScrFI CCNGG 3 cut(s) 597, 1008, 1101
SduI GDGCHC 1 cut(s) 1039
SfaNI GCATC 5 cut(s) 88, 406, 640, 655, 805
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 121, 506
SlaI CTCGAG 1 cut(s) 273
SmiMI CAYNNNNRTG 3 cut(s) 577, 915, 977
SmlI CTYRAG 2 cut(s) 273, 306
SmoI CTYRAG 2 cut(s) 273, 306
SpeI ACTAGT 1 cut(s) 995
Sse9I AATT 4 cut(s) 164, 193, 744, 1108
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 996
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 595, 1006, 1099
TaaI ACNGT 1 cut(s) 1066
TaiI ACGT 1 cut(s) 483
TaqI TCGA 2 cut(s) 274, 663
TasI AATT 4 cut(s) 164, 193, 744, 1108
TatI WGTACW 3 cut(s) 842, 1042, 1055
TfiI GAWTC 3 cut(s) 281, 501, 569
Tru1I TTAA 4 cut(s) 254, 528, 855, 915
Tru9I TTAA 4 cut(s) 254, 528, 855, 915
TscAI CASTG 4 cut(s) 145, 297, 759, 1033
TseI GCWGC 5 cut(s) 326, 419, 550, 827, 892
TspDTI ATGAA 4 cut(s) 21, 194, 794, 899
TspGWI ACGGA 2 cut(s) 36, 797
TspRI CASTG 4 cut(s) 145, 297, 759, 1033
VpaK11BI GGWCC 2 cut(s) 121, 506
XapI RAATTY 1 cut(s) 164
XceI RCATGY 3 cut(s) 341, 545, 1099
XhoI CTCGAG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.