Prupe.4G172900_v2.0.a1

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012161
Physical Location & Seq
Forward (+)
10239199 .. 10243983
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G172900.1

Sequence Viewer

Length: 1110 bp
ATGGGTAGGCCTCCGAGTAACGGAGGCCCTGCCTTCCGCTTCACGCAGTCTGAGGTTTCGGAGATGGAAGCTATTCTGCAACAGCACAATAACACAATGCCAGCACGTGAAGTTCTTGTGGCCCTTGCGGATAAGTTCAGTGAATCGGCAGAGCGGAAGGGCAAGATTGCAGTACAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATCAGGGCAAAATCAAGTAAGGTTCTTGGGAAGTTAAATGTGTCACCTATGTCTCGGGATGATTCAAATCCAGTGAGAAATGTTCCTCAAGGCCCTCAACCTATAGCTGCTCCTATACATGCTCCTTCAGCTCAAGGTTCCGGAAAGGGTGCTTCTGAAAATTCTATTTTTGAGTTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTATGATGTTGCTAACTTTTTATCTCATAGATACTTGGAGACTGGTGATCCGGAAGTACTGGTTCGGTTTGCTGGGTTTGGACCAGAGGAGGATGAATGGGTCAATGTACGGAAGCATGTCAGGCAGCGCTCTCTGCCATGTGAATCATCAGAGTGTGTTGCAGTTCTCCCAGGAGATCTCATACTATGTTTTCAGGAAGGTAAAGAGCAGGCTTTGTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGACATGATGTAAGAGGATGTCGTTGTAGGTTTTTGGTGCGCTATGTTCATGATCAGTCCGAGGAAATTGTTCCACTAAGGAAGGTCTGCCGTCGGCCTGAAACGGATTACAGGTTGCAACAACTTCATGCCGTGAATGAGGCGGCATCAGCAGAGCAGAAAAGTATGGATCATTTTATGGGGTCTGTTACTTCTGCGGAAATGATGCAAAAGCAGCAGAATACAGATGCAGCTTCGGCGCCCCCAGTTTTGCATGCTAATGCTTCTTTAGCTACCCAATCTACGACTCCAGAATTTAAAGGATCTGAAGTCAGCACTGTTATTAGTTCAGGGAATTCTAATTTTCCTCCAGGTAGTGCTGTAATCACAAGCGGCACTGCTACAGTTGTTGTTCCTGGTGGCTCTGTCGAGAACATGCCAAAAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

370

Amino Acids

40.59

Weight (kDa)

7.15

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 916
AccBSI CCGCTC 1 cut(s) 154
AccIII TCCGGA 2 cut(s) 359, 475
AciI CCGC 6 cut(s) 37, 128, 154, 821, 875, 1050
AclWI GGATC 3 cut(s) 467, 855, 988
AcsI RAATTY 3 cut(s) 379, 971, 1012
AcuI CTGAAG 2 cut(s) 330, 1005
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 4 cut(s) 174, 483, 534, 644
AfeI AGCGCT 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 285, 398
AjnI CCWGG 3 cut(s) 595, 1027, 1072
AluBI AGCT 6 cut(s) 71, 326, 350, 401, 911, 950
AluI AGCT 6 cut(s) 71, 326, 350, 401, 911, 950
Alw26I GTCTC 2 cut(s) 276, 458
AlwI GGATC 3 cut(s) 467, 855, 988
Ama87I CYCGRG 1 cut(s) 273
Aor13HI TCCGGA 2 cut(s) 359, 475
Aor51HI AGCGCT 1 cut(s) 554
AoxI GGCC 5 cut(s) 8, 25, 120, 310, 773
ApeKI GCWGC 4 cut(s) 326, 550, 892, 908
ApoI RAATTY 3 cut(s) 379, 971, 1012
Asp700I GAANNNNTTC 3 cut(s) 72, 197, 747
AspLEI GCGC 3 cut(s) 555, 720, 919
AspS9I GGNCC 4 cut(s) 26, 121, 311, 506
AsuHPI GGTGA 2 cut(s) 255, 482
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 916
BbrPI CACGTG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 685
BbvI GCAGC 4 cut(s) 313, 562, 904, 920
BccI CCATC 2 cut(s) 58, 410
BceAI ACGGC 2 cut(s) 753, 794
BciT130I CCWGG 3 cut(s) 597, 1029, 1074
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 276, 458
BfaI CTAG 1 cut(s) 1108
BfmI CTRYAG 2 cut(s) 321, 1059
BfoI RGCGCY 2 cut(s) 556, 920
BglII AGATCT 1 cut(s) 601
BisI GCNGC 6 cut(s) 327, 551, 822, 893, 909, 1051
BlsI GCNGC 6 cut(s) 328, 552, 823, 894, 910, 1052
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 3 cut(s) 597, 1029, 1074
Bme18I GGWCC 1 cut(s) 506
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 4 cut(s) 26, 121, 311, 506
BmiI GGNNCC 3 cut(s) 200, 358, 918
BmrFI CCNGG 3 cut(s) 597, 1029, 1074
BmrI ACTGGG 1 cut(s) 917
BmsI GCATC 5 cut(s) 640, 655, 833, 873, 895
BmuI ACTGGG 1 cut(s) 917
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 2 cut(s) 951, 1011
BpuEI CTTGAG 2 cut(s) 291, 336
BsaAI YACGTR 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 917
BsaJI CCNNGG 2 cut(s) 595, 738
BsaWI WCCGGW 2 cut(s) 359, 475
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 290, 472, 489, 923
Bse8I GATNNNNATC 1 cut(s) 285
BseAI TCCGGA 2 cut(s) 359, 475
BseBI CCWGG 3 cut(s) 597, 1029, 1074
BseDI CCNNGG 2 cut(s) 595, 738
BseGI GGATG 4 cut(s) 283, 421, 523, 701
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 4 cut(s) 290, 472, 489, 923
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 4 cut(s) 313, 562, 904, 920
BseYI CCCAGC 1 cut(s) 497
BshFI GGCC 5 cut(s) 10, 27, 122, 312, 775
BshNI GGYRCC 1 cut(s) 916
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 360, 476
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 276, 458
BsnI GGCC 5 cut(s) 10, 27, 122, 312, 775
BsoBI CYCGRG 1 cut(s) 273
Bsp13I TCCGGA 2 cut(s) 359, 475
Bsp143I GATC 5 cut(s) 472, 601, 730, 847, 980
BspACI CCGC 6 cut(s) 37, 128, 154, 821, 875, 1050
BspANI GGCC 5 cut(s) 10, 27, 122, 312, 775
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 2 cut(s) 359, 475
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 200, 358, 918
BspPI GGATC 3 cut(s) 467, 855, 988
BspT107I GGYRCC 1 cut(s) 916
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 4 cut(s) 290, 472, 489, 923
BssECI CCNNGG 2 cut(s) 595, 738
BssMI GATC 5 cut(s) 472, 601, 730, 847, 980
BssNI GRCGYC 1 cut(s) 917
Bst2UI CCWGG 3 cut(s) 597, 1029, 1074
Bst4CI ACNGT 2 cut(s) 997, 1063
BstACI GRCGYC 1 cut(s) 917
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 102, 636, 933
BstDEI CTNAG 2 cut(s) 51, 755
BstF5I GGATG 4 cut(s) 283, 421, 523, 701
BstH2I RGCGCY 2 cut(s) 556, 920
BstHHI GCGC 3 cut(s) 555, 720, 919
BstKTI GATC 5 cut(s) 475, 604, 733, 850, 983
BstMAI GTCTC 2 cut(s) 276, 458
BstMBI GATC 5 cut(s) 472, 601, 730, 847, 980
BstMWI GCNNNNNNNGC 8 cut(s) 224, 347, 547, 559, 827, 892, 914, 947
BstNI CCWGG 3 cut(s) 597, 1029, 1074
BstNSI RCATGY 4 cut(s) 341, 545, 935, 1096
BstSCI CCNGG 3 cut(s) 595, 1027, 1072
BstSFI CTRYAG 2 cut(s) 321, 1059
BstV1I GCAGC 4 cut(s) 313, 562, 904, 920
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 2 cut(s) 601, 980
BstYI RGATCY 2 cut(s) 601, 980
BsuRI GGCC 5 cut(s) 10, 27, 122, 312, 775
BtsCI GGATG 4 cut(s) 283, 421, 523, 701
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 4 cut(s) 145, 297, 993, 1053
Cac8I GCNNGC 3 cut(s) 102, 636, 933
CciI TCATGA 1 cut(s) 727
CfoI GCGC 3 cut(s) 555, 720, 919
Cfr13I GGNCC 4 cut(s) 26, 121, 311, 506
Csp6I GTAC 4 cut(s) 173, 482, 533, 643
CviQI GTAC 4 cut(s) 173, 482, 533, 643
DdeI CTNAG 2 cut(s) 51, 755
DinI GGCGCC 1 cut(s) 918
DpnI GATC 5 cut(s) 474, 603, 732, 849, 982
DpnII GATC 5 cut(s) 472, 601, 730, 847, 980
DraI TTTAAA 1 cut(s) 976
Eco147I AGGCCT 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 554
Eco57I CTGAAG 2 cut(s) 330, 1005
Eco72I CACGTG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 273
EcoO109I RGGNCCY 2 cut(s) 26, 311
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 3 cut(s) 595, 1027, 1072
EgeI GGCGCC 1 cut(s) 918
EheI GGCGCC 1 cut(s) 918
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 6 cut(s) 327, 551, 822, 893, 909, 1051
FokI GGATG 4 cut(s) 290, 428, 530, 708
Fsp4HI GCNGC 6 cut(s) 327, 551, 822, 893, 909, 1051
FspBI CTAG 1 cut(s) 1108
GlaI GCGC 3 cut(s) 554, 719, 918
GluI GCNGC 6 cut(s) 327, 551, 822, 893, 909, 1051
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 2 cut(s) 951, 1011
HaeII RGCGCY 2 cut(s) 556, 920
HaeIII GGCC 5 cut(s) 10, 27, 122, 312, 775
HapII CCGG 2 cut(s) 360, 476
HhaI GCGC 3 cut(s) 555, 720, 919
Hin1I GRCGYC 1 cut(s) 917
Hin6I GCGC 3 cut(s) 553, 718, 917
HinP1I GCGC 3 cut(s) 553, 718, 917
HinfI GANTC 4 cut(s) 143, 281, 569, 964
HpaII CCGG 2 cut(s) 360, 476
HphI GGTGA 2 cut(s) 255, 482
Hpy188I TCNGA 7 cut(s) 15, 52, 61, 376, 577, 739, 985
Hpy188III TCNNGA 7 cut(s) 275, 360, 476, 620, 728, 968, 1087
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 5 cut(s) 43, 151, 354, 617, 754
HpyCH4III ACNGT 2 cut(s) 997, 1063
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 8 cut(s) 79, 170, 422, 587, 796, 886, 908, 931
HpyF10VI GCNNNNNNNGC 8 cut(s) 224, 347, 547, 559, 827, 892, 914, 947
HpyF3I CTNAG 2 cut(s) 51, 755
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 917
HspAI GCGC 3 cut(s) 553, 718, 917
KasI GGCGCC 1 cut(s) 916
Kpn2I TCCGGA 2 cut(s) 359, 475
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 5 cut(s) 472, 601, 730, 847, 980
LmnI GCTCC 2 cut(s) 334, 346
Lsp1109I GCAGC 4 cut(s) 313, 562, 904, 920
LweI GCATC 5 cut(s) 640, 655, 833, 873, 895
MaeI CTAG 1 cut(s) 1108
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 17, 261, 865
MalI GATC 5 cut(s) 474, 603, 732, 849, 982
MbiI CCGCTC 1 cut(s) 154
MboI GATC 5 cut(s) 472, 601, 730, 847, 980
MboII GAAGA 1 cut(s) 690
MflI RGATCY 2 cut(s) 601, 980
MluCI AATT 6 cut(s) 193, 379, 744, 971, 1012, 1018
Mly113I GGCGCC 1 cut(s) 917
MlyI GAGTC 1 cut(s) 958
MroI TCCGGA 2 cut(s) 359, 475
MroXI GAANNNNTTC 3 cut(s) 72, 197, 747
MseI TTAA 2 cut(s) 254, 975
MslI CAYNNNNRTG 2 cut(s) 577, 936
MspI CCGG 2 cut(s) 360, 476
MspR9I CCNGG 3 cut(s) 597, 1029, 1074
MvaI CCWGG 3 cut(s) 597, 1029, 1074
MwoI GCNNNNNNNGC 8 cut(s) 224, 347, 547, 559, 827, 892, 914, 947
NarI GGCGCC 1 cut(s) 917
NdeII GATC 5 cut(s) 472, 601, 730, 847, 980
NlaIV GGNNCC 3 cut(s) 200, 358, 918
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 4 cut(s) 341, 545, 935, 1096
PaeI GCATGC 1 cut(s) 935
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 10
PdmI GAANNNNTTC 3 cut(s) 72, 197, 747
PfeI GAWTC 3 cut(s) 143, 281, 569
PkrI GCNGC 6 cut(s) 328, 552, 823, 894, 910, 1052
PleI GAGTC 1 cut(s) 958
PluTI GGCGCC 1 cut(s) 920
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 1 cut(s) 958
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 3 cut(s) 595, 1027, 1072
PspCI CACGTG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 3 cut(s) 595, 1027, 1072
PspN4I GGNNCC 3 cut(s) 200, 358, 918
PspPI GGNCC 4 cut(s) 26, 121, 311, 506
PsuI RGATCY 2 cut(s) 601, 980
RsaI GTAC 4 cut(s) 174, 483, 534, 644
RsaNI GTAC 4 cut(s) 173, 482, 533, 643
RseI CAYNNNNRTG 2 cut(s) 577, 936
SaqAI TTAA 2 cut(s) 254, 975
SatI GCNGC 6 cut(s) 327, 551, 822, 893, 909, 1051
Sau3AI GATC 5 cut(s) 472, 601, 730, 847, 980
Sau96I GGNCC 4 cut(s) 26, 121, 311, 506
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 3 cut(s) 597, 1029, 1074
SfaNI GCATC 5 cut(s) 640, 655, 833, 873, 895
SfcI CTRYAG 2 cut(s) 321, 1059
SfoI GGCGCC 1 cut(s) 918
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 577, 936
SmlI CTYRAG 2 cut(s) 306, 351
SmoI CTYRAG 2 cut(s) 306, 351
SphI GCATGC 1 cut(s) 935
Sse9I AATT 6 cut(s) 193, 379, 744, 971, 1012, 1018
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 6 cut(s) 37, 128, 154, 821, 875, 1050
SspDI GGCGCC 1 cut(s) 916
SspMI CTAG 1 cut(s) 1108
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 595, 1027, 1072
TaaI ACNGT 2 cut(s) 997, 1063
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 1086
TasI AATT 6 cut(s) 193, 379, 744, 971, 1012, 1018
TatI WGTACW 3 cut(s) 172, 481, 642
TauI GCSGC 2 cut(s) 824, 1053
TfiI GAWTC 3 cut(s) 143, 281, 569
Tru1I TTAA 2 cut(s) 254, 975
Tru9I TTAA 2 cut(s) 254, 975
TscAI CASTG 4 cut(s) 145, 297, 1000, 1060
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 4 cut(s) 326, 550, 892, 908
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 4 cut(s) 194, 534, 716, 794
TspGWI ACGGA 3 cut(s) 36, 550, 797
TspRI CASTG 4 cut(s) 145, 297, 1000, 1060
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 3 cut(s) 379, 971, 1012
XceI RCATGY 4 cut(s) 341, 545, 935, 1096
XmnI GAANNNNTTC 3 cut(s) 72, 197, 747
XspI CTAG 1 cut(s) 1108
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.