MD11G1257200.v1.1

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012161
Physical Location & Seq
Reverse (-)
36946544 .. 36952299
5756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1257200.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGTCGGCCTCCGAGCAACGGAGGCCCTGCCTTCCGCTTCGTCCAGTCCGAGGTTACGGAGATGGAAGCTATTCTGCAACAATACAATAACACAATGCCATCACGTGAAGTGCTTATGGCCCTTGCAGATAAGTTCAGTGAATCACCAGAGCGGAAGGGCAAGATTACAGTACAAATGAAACAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATTAGGGCAAAATCAAGCAAGGTTCTTGGGAAGTTAGATGTGTCACCTATGTCTCGTGATGATTCGGCTGCAGCGAGAAATGTTCCTCAAGGCCCTCAGCAGATTGCTGCTCCTATACATGCTCCTCCTGTTCCAGGCTCAGGAAAGGGTGTTACTGAAAATGCTATCCATGAGTTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTATGATGTTGCTAACTTTTTAGCTCATAGAAATTTGGAGACTGGTAATCCGGAAGTTCTGGTTCGGTTTGCTGGGTTTGGACCAGAGGAGGATGAGTGGGTTAACGTACGAAAGCATGTCAGGCAGCGCTCTCTCCCGTGTGAATCATCAGAATGTGTTGCAGTTCTCCCCGGAGATCTCATACTATGCTTTCAGGAAGGTAAAGAGCAGGCCTTGTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGACGACATGATGTAAGAGGATGTCGATGTAGGTTTCTAGTGCGCTATGTTCATGATCAGTCCGAGGAAATTGTTCCATTGAGAAAGGTCTGCCGTCGGCCTGAAACAGATTACAGGTTGCAGCAACTGCATGCTGTGAACGAGGCAATATCAGCAGAGCGGAAAAGTATGGAGCATTTTATGGTTTCTGCTACTTCCGGCGAAATGATGCAAAACCAGCAGAATGCAGAAGCAGCGCATGTGCCCCCAACTTTTCATGTTGCTGCTTCTTTACCCACCCAAGCTACAACTCCAGAATTGAGAACTGAAATCAGCACGGTTGTTAGTGCAGGGAATTCTAATGCCCCCGTAAGTAGTACTGTAGTCACAAGCGTGCCGGCTACAGTCGCCGCTCCCGGTGGCTCGGTCTCAGCCGTGCCAAAAGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

369

Amino Acids

40.56

Weight (kDa)

7.7

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 131 - 256 7e-44 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 154, 835, 1067
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 4 cut(s) 37, 154, 835, 1065
AcsI RAATTY 2 cut(s) 457, 1009
AcvI CACGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 174, 534, 644, 1033
AfeI AGCGCT 1 cut(s) 554
AfiI CCNNNNNNNGG 4 cut(s) 20, 52, 353, 359
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 1 cut(s) 352
AleI CACNNNNGTG 1 cut(s) 1046
AluBI AGCT 4 cut(s) 71, 401, 449, 959
AluI AGCT 4 cut(s) 71, 401, 449, 959
Alw26I GTCTC 3 cut(s) 276, 458, 1087
AlwNI CAGNNNCTG 1 cut(s) 802
Aor13HI TCCGGA 1 cut(s) 475
Aor51HI AGCGCT 1 cut(s) 554
AoxI GGCC 6 cut(s) 8, 25, 120, 310, 636, 773
ApeKI GCWGC 7 cut(s) 287, 290, 326, 550, 796, 908, 938
ApoI RAATTY 2 cut(s) 457, 1009
Asp700I GAANNNNTTC 3 cut(s) 72, 197, 747
AspLEI GCGC 3 cut(s) 555, 720, 913
AspS9I GGNCC 4 cut(s) 26, 121, 311, 506
AsuC2I CCSGG 2 cut(s) 597, 1071
AsuHPI GGTGA 2 cut(s) 138, 255
AvaII GGWCC 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 921
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 7 cut(s) 274, 302, 313, 562, 808, 920, 925
BccI CCATC 3 cut(s) 58, 109, 410
BceAI ACGGC 2 cut(s) 753, 1073
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 2 cut(s) 597, 1071
BcoDI GTCTC 3 cut(s) 276, 458, 1087
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 3 cut(s) 288, 1035, 1056
BfoI RGCGCY 1 cut(s) 556
BglII AGATCT 1 cut(s) 601
BisI GCNGC 8 cut(s) 288, 291, 327, 551, 797, 909, 939, 1065
BlsI GCNGC 8 cut(s) 289, 292, 328, 552, 798, 910, 940, 1066
BmcAI AGTACT 1 cut(s) 1033
Bme1390I CCNGG 3 cut(s) 354, 597, 1071
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 4 cut(s) 26, 121, 311, 506
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 3 cut(s) 354, 597, 1071
BmsI GCATC 3 cut(s) 640, 655, 873
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 2 cut(s) 315, 358
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 597, 1071
BsaAI YACGTR 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 1087
BsaJI CCNNGG 3 cut(s) 51, 595, 738
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 506, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 52, 353, 359
Bse118I RCCGGY 1 cut(s) 1051
Bse1I ACTGG 2 cut(s) 46, 472
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 51, 595, 738
BseGI GGATG 3 cut(s) 421, 523, 701
BseLI CCNNNNNNNGG 4 cut(s) 20, 52, 353, 359
BseMII CTCAG 3 cut(s) 329, 372, 1098
BseNI ACTGG 2 cut(s) 46, 472
BseRI GAGGAG 2 cut(s) 333, 527
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 7 cut(s) 274, 302, 313, 562, 808, 920, 925
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 1023
BshFI GGCC 6 cut(s) 10, 27, 122, 312, 638, 775
BsiSI CCGG 5 cut(s) 476, 597, 873, 1052, 1071
BsiWI CGTACG 1 cut(s) 532
BslI CCNNNNNNNGG 4 cut(s) 20, 52, 353, 359
BsmAI GTCTC 3 cut(s) 276, 458, 1087
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 6 cut(s) 10, 27, 122, 312, 638, 775
Bso31I GGTCTC 1 cut(s) 1087
Bsp1286I GDGCHC 1 cut(s) 921
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 2 cut(s) 601, 730
BspACI CCGC 4 cut(s) 37, 154, 835, 1065
BspANI GGCC 6 cut(s) 10, 27, 122, 312, 638, 775
BspCNI CTCAG 3 cut(s) 328, 371, 1097
BspEI TCCGGA 1 cut(s) 475
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 1087
BsrBI CCGCTC 3 cut(s) 154, 835, 1067
BsrFI RCCGGY 1 cut(s) 1051
BsrI ACTGG 2 cut(s) 46, 472
BssAI RCCGGY 1 cut(s) 1051
BssECI CCNNGG 3 cut(s) 51, 595, 738
BssMI GATC 2 cut(s) 601, 730
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 172, 994, 1036, 1060
BstAPI GCANNNNNTGC 1 cut(s) 802
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 636, 807, 1049, 1053
BstDEI CTNAG 3 cut(s) 315, 358, 1084
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 421, 523, 701
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 3 cut(s) 555, 720, 913
BstKTI GATC 2 cut(s) 604, 733
BstMAI GTCTC 3 cut(s) 276, 458, 1087
BstMBI GATC 2 cut(s) 601, 730
BstMWI GCNNNNNNNGC 8 cut(s) 24, 224, 547, 802, 827, 892, 908, 1061
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 4 cut(s) 341, 545, 809, 917
BstSCI CCNGG 3 cut(s) 352, 595, 1069
BstSFI CTRYAG 3 cut(s) 288, 1035, 1056
BstSLI GKGCMC 1 cut(s) 921
BstV1I GCAGC 7 cut(s) 274, 302, 313, 562, 808, 920, 925
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 6 cut(s) 10, 27, 122, 312, 638, 775
BtsCI GGATG 3 cut(s) 421, 523, 701
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 636, 807, 1049, 1053
CaiI CAGNNNCTG 1 cut(s) 802
CciI TCATGA 1 cut(s) 727
CfoI GCGC 3 cut(s) 555, 720, 913
Cfr10I RCCGGY 1 cut(s) 1051
Cfr13I GGNCC 4 cut(s) 26, 121, 311, 506
Csp6I GTAC 4 cut(s) 173, 533, 643, 1032
CviQI GTAC 4 cut(s) 173, 533, 643, 1032
DdeI CTNAG 3 cut(s) 315, 358, 1084
DpnI GATC 2 cut(s) 603, 732
DpnII GATC 2 cut(s) 601, 730
Eco147I AGGCCT 1 cut(s) 638
Eco31I GGTCTC 1 cut(s) 1087
Eco47I GGWCC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 554
Eco72I CACGTG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 26, 311
EcoRI GAATTC 1 cut(s) 1009
EcoRII CCWGG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 8 cut(s) 288, 291, 327, 551, 797, 909, 939, 1065
FokI GGATG 3 cut(s) 428, 530, 708
Fsp4HI GCNGC 8 cut(s) 288, 291, 327, 551, 797, 909, 939, 1065
FspBI CTAG 1 cut(s) 713
GlaI GCGC 3 cut(s) 554, 719, 912
GluI GCNGC 8 cut(s) 288, 291, 327, 551, 797, 909, 939, 1065
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 6 cut(s) 10, 27, 122, 312, 638, 775
HapII CCGG 5 cut(s) 476, 597, 873, 1052, 1071
HhaI GCGC 3 cut(s) 555, 720, 913
Hin6I GCGC 3 cut(s) 553, 718, 911
HinP1I GCGC 3 cut(s) 553, 718, 911
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 3 cut(s) 143, 281, 569
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 5 cut(s) 476, 597, 873, 1052, 1071
HphI GGTGA 2 cut(s) 138, 255
Hpy166II GTNNAC 2 cut(s) 529, 814
Hpy188I TCNGA 4 cut(s) 15, 52, 577, 739
Hpy188III TCNNGA 6 cut(s) 275, 360, 476, 620, 728, 968
Hpy8I GTNNAC 2 cut(s) 529, 814
Hpy99I CGWCG 2 cut(s) 681, 774
HpyAV CCTTC 3 cut(s) 43, 151, 617
HpyCH4III ACNGT 4 cut(s) 172, 994, 1036, 1060
HpyCH4IV ACGT 2 cut(s) 106, 531
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 224, 547, 802, 827, 892, 908, 1061
HpyF3I CTNAG 3 cut(s) 315, 358, 1084
HpySE526I ACGT 2 cut(s) 106, 531
HspAI GCGC 3 cut(s) 553, 718, 911
Kpn2I TCCGGA 1 cut(s) 475
KroI GCCGGC 1 cut(s) 1051
KroNI GCCGGC 1 cut(s) 1053
Ksp22I TGATCA 1 cut(s) 730
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 2 cut(s) 601, 730
LmnI GCTCC 4 cut(s) 334, 346, 847, 1072
Lsp1109I GCAGC 7 cut(s) 274, 302, 313, 562, 808, 920, 925
LweI GCATC 3 cut(s) 640, 655, 873
MaeI CTAG 1 cut(s) 713
MaeII ACGT 2 cut(s) 106, 531
MaeIII GTNAC 4 cut(s) 55, 261, 370, 1039
MalI GATC 2 cut(s) 603, 732
MbiI CCGCTC 3 cut(s) 154, 835, 1067
MboI GATC 2 cut(s) 601, 730
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 6 cut(s) 193, 457, 744, 971, 1009, 1102
MroI TCCGGA 1 cut(s) 475
MroNI GCCGGC 1 cut(s) 1051
MroXI GAANNNNTTC 3 cut(s) 72, 197, 747
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 2 cut(s) 577, 1046
MspI CCGG 5 cut(s) 476, 597, 873, 1052, 1071
MspR9I CCNGG 3 cut(s) 354, 597, 1071
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 8 cut(s) 24, 224, 547, 802, 827, 892, 908, 1061
NaeI GCCGGC 1 cut(s) 1053
NciI CCSGG 2 cut(s) 597, 1071
NdeII GATC 2 cut(s) 601, 730
NgoMIV GCCGGC 1 cut(s) 1051
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 2 cut(s) 261, 1039
NspI RCATGY 4 cut(s) 341, 545, 809, 917
OliI CACNNNNGTG 1 cut(s) 1046
PaeI GCATGC 1 cut(s) 809
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 290
PctI GAATGC 1 cut(s) 904
PdiI GCCGGC 1 cut(s) 1053
PdmI GAANNNNTTC 3 cut(s) 72, 197, 747
PfeI GAWTC 3 cut(s) 143, 281, 569
Pfl23II CGTACG 1 cut(s) 532
PkrI GCNGC 8 cut(s) 289, 292, 328, 552, 798, 910, 940, 1066
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 352
PspCI CACGTG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 352
PspLI CGTACG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 4 cut(s) 26, 121, 311, 506
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 4 cut(s) 174, 534, 644, 1033
RsaNI GTAC 4 cut(s) 173, 533, 643, 1032
RseI CAYNNNNRTG 2 cut(s) 577, 1046
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 8 cut(s) 288, 291, 327, 551, 797, 909, 939, 1065
Sau3AI GATC 2 cut(s) 601, 730
Sau96I GGNCC 4 cut(s) 26, 121, 311, 506
ScaI AGTACT 1 cut(s) 1033
ScrFI CCNGG 3 cut(s) 354, 597, 1071
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 3 cut(s) 640, 655, 873
SfcI CTRYAG 3 cut(s) 288, 1035, 1056
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 577, 1046
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SphI GCATGC 1 cut(s) 809
Sse9I AATT 6 cut(s) 193, 457, 744, 971, 1009, 1102
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 4 cut(s) 37, 154, 835, 1065
SspMI CTAG 1 cut(s) 713
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 3 cut(s) 352, 595, 1069
TaaI ACNGT 4 cut(s) 172, 994, 1036, 1060
TaiI ACGT 2 cut(s) 109, 534
TaqI TCGA 1 cut(s) 700
TaqII GACCGA 1 cut(s) 1069
TasI AATT 6 cut(s) 193, 457, 744, 971, 1009, 1102
TatI WGTACW 3 cut(s) 172, 642, 1031
TauI GCSGC 1 cut(s) 1067
TfiI GAWTC 3 cut(s) 143, 281, 569
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 261, 1039
TseI GCWGC 7 cut(s) 287, 290, 326, 550, 796, 908, 938
Tsp45I GTSAC 2 cut(s) 261, 1039
TspDTI ATGAA 3 cut(s) 194, 716, 920
TspGWI ACGGA 2 cut(s) 36, 74
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 506
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 2 cut(s) 457, 1009
XceI RCATGY 4 cut(s) 341, 545, 809, 917
XmnI GAANNNNTTC 3 cut(s) 72, 197, 747
XspI CTAG 1 cut(s) 713
ZrmI AGTACT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.