Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012522

Physical Location & Seq

Genomic Coordinates Reverse (-)

6523379 .. 6526044

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCGATTCGTCGCGCCACCGCCTCGTTCCGGCGATAACTCACCGTCACCTTCACCATCTTCCGGTATATCCGAAGAGATTCTCTCCCGTTCTTCGGATCCTCCTTTAGAGTTTAGTCCTCCATTGATCGCCATGGTGGTGGTTCTAGCCGCCGCTTTTCTATTCGTAACTTACTCTCGTCTCATCTCCCGCCGTTTTCTTTCACCTCTATTCCGTCGTTTTAGAAGGTGGCGATGCCGTCGACGCCGTCTCCTTCACTTATCTTCAGCTTCCTCTGCTTCAACTTCATCCTCCGATCTCCGATCATTTTCACCTTTCCCTTTCGACTCTTTTCATTACTCTTCTTACTCACCTTACGGATTAGACGATTCCGTTATCAAAACTTTACCGCTGTTTCTCTACTCCGCCGCTGCTTGCACCGGAAAACCCGCGGTGGGGAAAACCTCCGCCGCCAATTGCAGAGATTGTGCTGTTTGTTTGTTGGAATTCGAAGAAGGTGATTATGTACGAACACTTCCGTTATGCTTCCATGCTTTTCACCTTGAATGCATCGATGAATGGCTCCGATCTCACCCTAACTGTCCGTTATGCCGTACGGCGATTCTCGGATCCGCCGGAGTTTTAACGCCTATGTCGCCGTTCGTTCCGTTAATGGCTCCTCGAATTCGTCCGAGTCTCGATGATGAAGAGAATAACGCGATCATCATCCGCGGCGAAATCACACCGTCGCGGAGCAATTGGAACACAATCGCTGCCGATACGACGAACGATCAGGAGATCAGAGCGTCGGTGGAAGAGCAATCATCACCGGCGATTTCTCGGTTCCGGGAGCTGAAGAGATCGTACTCGTTCGAATGCGAGAGAGAATCTGAATCAGAGAGAGTAACGATGGAGCCAGCGACGGTGTCTCCATGGAGATACCGGAGATCTACATGGAACAAACGTCAATCACCGTTCGGAAACCTAATATCGAAATCAAGAGTGTTCTCGTTCCGTTACTACAGAAGCACGAAATCACCGTTCTTCCGACGGAGATCATCGGCGGGAGTGTTTTACCCGATATCAGAACGGATTCCAGCGACGGGAAGCTCATCGCGGCGAACGAAATCGATGACGAGTCCGATGTTCTTCAGAACAGCACCGCACTCATCGAGCCGGTTAAGATGCGGAGATCCAGAGGCACTGTTATCGCCGGAGAGATGGAGAAGAAGAGACACGTGTAGGGCAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

411

Amino Acids

46.66

Weight (kDa)

9.8

Isoelectric Point (pI)

95.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	155 - 198	1.6e-14	Ring finger domain
zf-RING_11	PF17123	155 - 184	1.1e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	156 - 197	3e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	170 - 198	1.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18930 AT3G18930 AT3G18930
fragaria_vesca	FvH4_2g07470
malus_domestica	MD10G1085100.v1.1
prunus_persica	Prupe.8G108300_v2.0.a1
pyrus_communis	pycom10g06670
rosa_laevigata	RLG00000014460
rosa_multiflora	Rmu_co8088512.1_g000001 Rmu_co8388237.1_g000001 Rmu_sc0006019.1_g000006 Rmu_sc0015236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00207740
rosa_rugosa	Rorug05G0594900
rosa_samantha	Rh6AG114300 Rh6BG108500 Rh6CG105900 Rh6DG096300
rosa_wichuraiana	Rw6G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
AclWI	GGATC	5 cut(s)	92, 105, 603, 616, 1166
AcsI	RAATTY	2 cut(s)	485, 663
AcuI	CTGAAG	3 cut(s)	249, 854, 1114
AcvI	CACGTG	1 cut(s)	1218
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	3 cut(s)	507, 595, 845
AfiI	CCNNNNNNNGG	6 cut(s)	29, 62, 94, 434, 435, 1082
AflIII	ACRYGT	2 cut(s)	1215, 1217
AgsI	TTSAA	2 cut(s)	282, 545
AluBI	AGCT	3 cut(s)	269, 832, 1089
AluI	AGCT	3 cut(s)	269, 832, 1089
Alw26I	GTCTC	5 cut(s)	185, 254, 680, 912, 1206
AlwI	GGATC	5 cut(s)	92, 105, 603, 616, 1166
ApeKI	GCWGC	2 cut(s)	410, 752
ApoI	RAATTY	2 cut(s)	485, 663
Asp700I	GAANNNNTTC	2 cut(s)	78, 1071
AspLEI	GCGC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	827
AsuII	TTCGAA	2 cut(s)	489, 852
BamHI	GGATCC	2 cut(s)	97, 608
BarI	GAAGNNNNNNTAC	4 cut(s)	498, 530, 827, 859
BbrPI	CACGTG	1 cut(s)	1218
BbvI	GCAGC	2 cut(s)	397, 739
BccI	CCATC	3 cut(s)	64, 883, 1194
BceAI	ACGGC	6 cut(s)	177, 222, 231, 576, 612, 622
BcgI	CGANNNNNNTGC	2 cut(s)	1170, 1204
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	5 cut(s)	185, 254, 680, 912, 1206
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	1000
BglII	AGATCT	1 cut(s)	926
BisI	GCNGC	8 cut(s)	150, 153, 408, 411, 450, 712, 753, 1097
BlsI	GCNGC	8 cut(s)	151, 154, 409, 412, 451, 713, 754, 1098
Bme1390I	CCNGG	1 cut(s)	827
BmiI	GGNNCC	6 cut(s)	99, 563, 610, 657, 824, 894
BmrFI	CCNGG	1 cut(s)	827
BmsI	GCATC	3 cut(s)	224, 558, 1154
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu14I	TTCGAA	2 cut(s)	489, 852
BpuMI	CCSGG	1 cut(s)	827
Bsa29I	ATCGAT	2 cut(s)	552, 1109
BsaAI	YACGTR	1 cut(s)	1218
BsaBI	GATNNNNATC	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	132, 429, 709, 911
BsaWI	WCCGGW	3 cut(s)	62, 419, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 892, 922
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 62, 94, 434, 435, 1082
Bse118I	RCCGGY	2 cut(s)	808, 1155
Bse8I	GATNNNNATC	1 cut(s)	704
BseCI	ATCGAT	2 cut(s)	552, 1109
BseDI	CCNNGG	4 cut(s)	132, 429, 709, 911
BseGI	GGATG	2 cut(s)	287, 705
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	6 cut(s)	29, 62, 94, 434, 435, 1082
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	397, 739
Bsh1236I	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
BshVI	ATCGAT	2 cut(s)	552, 1109
BsiSI	CCGG	9 cut(s)	30, 63, 420, 615, 809, 826, 922, 1156, 1193
BsiWI	CGTACG	1 cut(s)	593
BslI	CCNNNNNNNGG	6 cut(s)	29, 62, 94, 434, 435, 1082
BsmAI	GTCTC	5 cut(s)	185, 254, 680, 912, 1206
BsmBI	CGTCTC	2 cut(s)	185, 254
BsmI	GAATGC	2 cut(s)	551, 860
Bsp119I	TTCGAA	2 cut(s)	489, 852
Bsp19I	CCATGG	2 cut(s)	132, 911
BspDI	ATCGAT	2 cut(s)	552, 1109
BspFNI	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
BspLI	GGNNCC	6 cut(s)	99, 563, 610, 657, 824, 894
BspPI	GGATC	5 cut(s)	92, 105, 603, 616, 1166
BspQI	GCTCTTC	1 cut(s)	789
BspT104I	TTCGAA	2 cut(s)	489, 852
BsrFI	RCCGGY	2 cut(s)	808, 1155
BssAI	RCCGGY	2 cut(s)	808, 1155
BssECI	CCNNGG	4 cut(s)	132, 429, 709, 911
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	132, 911
Bst4CI	ACNGT	7 cut(s)	45, 581, 726, 904, 954, 1020, 1185
Bst6I	CTCTTC	6 cut(s)	69, 346, 681, 789, 830, 1204
BstACI	GRCGYC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	1218
BstBI	TTCGAA	2 cut(s)	489, 852
BstC8I	GCNNGC	2 cut(s)	415, 897
BstDSI	CCRYGG	4 cut(s)	132, 429, 709, 911
BstF5I	GGATG	2 cut(s)	287, 705
BstFNI	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
BstHHI	GCGC	1 cut(s)	16
BstMAI	GTCTC	5 cut(s)	185, 254, 680, 912, 1206
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 275, 634
BstSCI	CCNGG	1 cut(s)	825
BstSFI	CTRYAG	1 cut(s)	1000
BstUI	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
BstV1I	GCAGC	2 cut(s)	397, 739
BstX2I	RGATCY	4 cut(s)	97, 608, 926, 1171
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	4 cut(s)	97, 608, 926, 1171
Bsu15I	ATCGAT	2 cut(s)	552, 1109
BsuTUI	ATCGAT	2 cut(s)	552, 1109
BtgI	CCRYGG	4 cut(s)	132, 429, 709, 911
BtgZI	GCGATG	2 cut(s)	247, 1077
BtsCI	GGATG	2 cut(s)	287, 705
BtsIMutI	CAGTG	1 cut(s)	1181
Cac8I	GCNNGC	2 cut(s)	415, 897
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	2 cut(s)	808, 1155
Cfr42I	CCGCGG	2 cut(s)	432, 712
ClaI	ATCGAT	2 cut(s)	552, 1109
CseI	GACGC	2 cut(s)	252, 774
Csp6I	GTAC	3 cut(s)	506, 594, 844
CviAII	CATG	4 cut(s)	133, 530, 912, 933
CviJI	RGCY	8 cut(s)	149, 269, 562, 656, 832, 895, 1089, 1155
CviKI_1	RGCY	8 cut(s)	149, 269, 562, 656, 832, 895, 1089, 1155
CviQI	GTAC	3 cut(s)	506, 594, 844
Eam1104I	CTCTTC	6 cut(s)	69, 346, 681, 789, 830, 1204
EarI	CTCTTC	6 cut(s)	69, 346, 681, 789, 830, 1204
EciI	GGCGGA	3 cut(s)	394, 436, 601
Eco130I	CCWWGG	2 cut(s)	132, 911
Eco32I	GATATC	1 cut(s)	1062
Eco57I	CTGAAG	3 cut(s)	249, 854, 1114
Eco72I	CACGTG	1 cut(s)	1218
EcoRI	GAATTC	2 cut(s)	485, 663
EcoRV	GATATC	1 cut(s)	1062
EcoT14I	CCWWGG	2 cut(s)	132, 911
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	2 cut(s)	132, 911
Esp3I	CGTCTC	2 cut(s)	185, 254
FaeI	CATG	4 cut(s)	136, 533, 915, 936
FaiI	YATR	9 cut(s)	68, 134, 504, 523, 531, 589, 632, 913, 934
FatI	CATG	4 cut(s)	132, 529, 911, 932
FauI	CCCGC	3 cut(s)	197, 436, 1036
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	8 cut(s)	150, 153, 408, 411, 450, 712, 753, 1097
FokI	GGATG	2 cut(s)	274, 692
Fsp4HI	GCNGC	8 cut(s)	150, 153, 408, 411, 450, 712, 753, 1097
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	8 cut(s)	150, 153, 408, 411, 450, 712, 753, 1097
HapII	CCGG	9 cut(s)	30, 63, 420, 615, 809, 826, 922, 1156, 1193
HgaI	GACGC	2 cut(s)	252, 774
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	136, 533, 915, 936
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HpaII	CCGG	9 cut(s)	30, 63, 420, 615, 809, 826, 922, 1156, 1193
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	4 cut(s)	677, 773, 978, 1175
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	60, 219, 263, 488
HpyCH4III	ACNGT	7 cut(s)	45, 581, 726, 904, 954, 1020, 1185
HpyCH4IV	ACGT	2 cut(s)	943, 1217
HpyCH4V	TGCA	3 cut(s)	417, 459, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 275, 634
HpySE526I	ACGT	2 cut(s)	943, 1217
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	136, 533, 915, 936
HspAI	GCGC	1 cut(s)	14
KspI	CCGCGG	2 cut(s)	432, 712
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	5 cut(s)	567, 661, 732, 829, 892
Lsp1109I	GCAGC	2 cut(s)	397, 739
LweI	GCATC	3 cut(s)	224, 558, 1154
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	2 cut(s)	943, 1217
MaeIII	GTNAC	4 cut(s)	45, 166, 883, 995
MfeI	CAATTG	2 cut(s)	454, 736
MflI	RGATCY	4 cut(s)	97, 608, 926, 1171
MluCI	AATT	4 cut(s)	454, 485, 663, 736
MlyI	GAGTC	3 cut(s)	320, 682, 1126
MmeI	TCCRAC	2 cut(s)	462, 1051
MnlI	CCTC	9 cut(s)	33, 111, 129, 216, 283, 301, 454, 669, 1171
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	2 cut(s)	78, 1071
MseI	TTAA	3 cut(s)	623, 650, 1160
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	4 cut(s)	391, 410, 431, 711
MspI	CCGG	9 cut(s)	30, 63, 420, 615, 809, 826, 922, 1156, 1193
MspR9I	CCNGG	1 cut(s)	827
MunI	CAATTG	2 cut(s)	454, 736
Mva1269I	GAATGC	2 cut(s)	551, 860
MvnI	CGCG	6 cut(s)	14, 431, 698, 711, 730, 1096
MwoI	GCNNNNNNNGC	3 cut(s)	243, 275, 634
NciI	CCSGG	1 cut(s)	827
NcoI	CCATGG	2 cut(s)	132, 911
NlaIII	CATG	4 cut(s)	136, 533, 915, 936
NlaIV	GGNNCC	6 cut(s)	99, 563, 610, 657, 824, 894
NmuCI	GTSAC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	551
NspV	TTCGAA	2 cut(s)	489, 852
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	3 cut(s)	363, 1016, 1100
PctI	GAATGC	2 cut(s)	551, 860
PdmI	GAANNNNTTC	2 cut(s)	78, 1071
PfeI	GAWTC	7 cut(s)	6, 79, 368, 601, 866, 872, 1072
Pfl23II	CGTACG	1 cut(s)	593
PflFI	GACNNNGTC	2 cut(s)	246, 904
PfoI	TCCNGGA	1 cut(s)	825
PkrI	GCNGC	8 cut(s)	151, 154, 409, 412, 451, 713, 754, 1098
PleI	GAGTC	3 cut(s)	320, 681, 1125
PmaCI	CACGTG	1 cut(s)	1218
PmlI	CACGTG	1 cut(s)	1218
PpsI	GAGTC	3 cut(s)	320, 681, 1125
Ppu21I	YACGTR	1 cut(s)	1218
PspCI	CACGTG	1 cut(s)	1218
PspLI	CGTACG	1 cut(s)	593
PspN4I	GGNNCC	6 cut(s)	99, 563, 610, 657, 824, 894
PsuI	RGATCY	4 cut(s)	97, 608, 926, 1171
PsyI	GACNNNGTC	2 cut(s)	246, 904
RsaI	GTAC	3 cut(s)	507, 595, 845
RsaNI	GTAC	3 cut(s)	506, 594, 844
RseI	CAYNNNNRTG	1 cut(s)	137
SacII	CCGCGG	2 cut(s)	432, 712
SalI	GTCGAC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	623, 650, 1160
SatI	GCNGC	8 cut(s)	150, 153, 408, 411, 450, 712, 753, 1097
SchI	GAGTC	3 cut(s)	320, 682, 1126
ScrFI	CCNGG	1 cut(s)	827
SfaNI	GCATC	3 cut(s)	224, 558, 1154
SfcI	CTRYAG	1 cut(s)	1000
Sfr303I	CCGCGG	2 cut(s)	432, 712
SfuI	TTCGAA	2 cut(s)	489, 852
SgrAI	CRCCGGYG	1 cut(s)	808
SgrBI	CCGCGG	2 cut(s)	432, 712
SgrDI	CGTCGACG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	454, 485, 663, 736
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	2 cut(s)	132, 911
TaaI	ACNGT	7 cut(s)	45, 581, 726, 904, 954, 1020, 1185
TaiI	ACGT	2 cut(s)	946, 1220
TasI	AATT	4 cut(s)	454, 485, 663, 736
TauI	GCSGC	6 cut(s)	152, 155, 410, 452, 714, 1099
TfiI	GAWTC	7 cut(s)	6, 79, 368, 601, 866, 872, 1072
Tru1I	TTAA	3 cut(s)	623, 650, 1160
Tru9I	TTAA	3 cut(s)	623, 650, 1160
TscAI	CASTG	1 cut(s)	1188
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	410, 752
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	4 cut(s)	276, 323, 570, 699
TspGWI	ACGGA	9 cut(s)	203, 361, 372, 507, 573, 636, 983, 1045, 1084
TspRI	CASTG	1 cut(s)	1188
Tth111I	GACNNNGTC	2 cut(s)	246, 904
XapI	RAATTY	2 cut(s)	485, 663
XmiI	GTMKAC	1 cut(s)	241
XmnI	GAANNNNTTC	2 cut(s)	78, 1071
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.