Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012522

Physical Location & Seq

Genomic Coordinates Reverse (-)

57654480 .. 57655151

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGGCTCAGGTCCCACGCCAACTGTCCGCTCTGCCGCGCCGGAATATTCCGTCCCGAGTCTCCGTTCATTCCCTTAATGGCCGCCAGAATCCGACCAAGCCTCGACGACTCGCTCCTCCGCAGCATGGCTCTCGAGCCACTCGCGGAAACTCCCCCGCGCGAGACGGAGTCCGCGGCGGAGATAACTCCCTGCGCGGAGGAGCAGTCGCCGCGGAGGACGTTCAATTACTGGGAGGACAGAATCAACGGCGGAGATTTCGTCCTCAAGCGGTCTTACTCGTTCGGATTCGAGCGGAGCTCCGCTTCGGAGCGGATGATGGTGACGGAGCCGACGACGGCGTCGCCGTGGCGGTACCGGAGAGGCGGAAGCTTCTGGAGCAAGAGGCCGTCACCGTTCGGGTCGCTGACGAAGCCTCGGGTCTTCTCGTTCCGGTCCCACCGAGGCATGAACATGAAGTCGCCTTTCTTCCGGCGAAAAGGCTTCTTCCCGCTGTCGGAGTCAAGCGCGAGATTTTCCACCGGCGGCGGCTCTTCCAGGCGGACGAAGTCGATGACGAGCCCGATGTTCATGAGGTCGTCGGCGTTGACCGCGGCGGCGTTCTCGTCAAGCCGGCTCCGGTGCGGCGACCCGGAGGCGCTGTTATCGCCGGAGAGGTTTAACAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

223

Amino Acids

25.35

Weight (kDa)

11.13

Isoelectric Point (pI)

83.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18930 AT3G18930 AT3G18930
fragaria_vesca	FvH4_2g07470
malus_domestica	MD10G1085100.v1.1
prunus_persica	Prupe.8G108300_v2.0.a1
pyrus_communis	pycom10g06670
rosa_laevigata	RLG00000014460
rosa_multiflora	Rmu_co8088512.1_g000001 Rmu_co8388237.1_g000001 Rmu_sc0006019.1_g000006 Rmu_sc0015236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00207740
rosa_rugosa	Rorug05G0594900
rosa_samantha	Rh6AG114300 Rh6BG108500 Rh6CG105900 Rh6DG096300
rosa_wichuraiana	Rw6G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	340
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccBSI	CCGCTC	3 cut(s)	31, 295, 313
AccII	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	127, 496
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	300, 372
AluI	AGCT	2 cut(s)	300, 372
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	66, 158
Ama87I	CYCGRG	3 cut(s)	56, 134, 417
AoxI	GGCC	2 cut(s)	81, 386
ApeKI	GCWGC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	5 cut(s)	41, 162, 197, 509, 640
AspS9I	GGNCC	2 cut(s)	12, 435
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	2 cut(s)	334, 384
AvaI	CYCGRG	3 cut(s)	56, 134, 417
AvaII	GGWCC	2 cut(s)	12, 435
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	302, 563
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	4 cut(s)	265, 331, 354, 373
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	2 cut(s)	66, 158
BfoI	RGCGCY	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	538, 632
Bme18I	GGWCC	2 cut(s)	12, 435
BmeT110I	CYCGRG	3 cut(s)	56, 134, 417
BmgT120I	GGNCC	2 cut(s)	12, 435
BmiI	GGNNCC	5 cut(s)	14, 330, 356, 437, 617
BmrFI	CCNGG	2 cut(s)	538, 632
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	632
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	6 cut(s)	174, 212, 347, 416, 442, 591
BsaWI	WCCGGW	3 cut(s)	357, 432, 618
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 246, 276, 626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 496
Bse118I	RCCGGY	2 cut(s)	521, 612
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	6 cut(s)	174, 212, 347, 416, 442, 591
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	127, 496
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	2 cut(s)	107, 215
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
BshFI	GGCC	2 cut(s)	83, 388
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	3 cut(s)	56, 134, 417
BsiSI	CCGG	9 cut(s)	42, 358, 433, 472, 522, 613, 619, 632, 650
BslFI	GGGAC	2 cut(s)	39, 421
BslI	CCNNNNNNNGG	2 cut(s)	127, 496
BsmAI	GTCTC	2 cut(s)	66, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	39, 421
BsnI	GGCC	2 cut(s)	83, 388
BsoBI	CYCGRG	3 cut(s)	56, 134, 417
Bsp1286I	GDGCHC	2 cut(s)	302, 563
BspANI	GGCC	2 cut(s)	83, 388
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	5 cut(s)	14, 330, 356, 437, 617
BspQI	GCTCTTC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	354
BsrBI	CCGCTC	3 cut(s)	31, 295, 313
BsrFI	RCCGGY	2 cut(s)	521, 612
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	2 cut(s)	521, 612
BssECI	CCNNGG	6 cut(s)	174, 212, 347, 416, 442, 591
BssNI	GRCGYC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	2 cut(s)	26, 396
Bst6I	CTCTTC	1 cut(s)	538
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	4 cut(s)	174, 212, 347, 591
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	5 cut(s)	41, 162, 197, 509, 640
BstMAI	GTCTC	2 cut(s)	66, 158
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 378, 412, 590, 646
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	536, 630
BstUI	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	83, 388
BtgI	CCRYGG	4 cut(s)	174, 212, 347, 591
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	614
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	5 cut(s)	41, 162, 197, 509, 640
Cfr10I	RCCGGY	2 cut(s)	521, 612
Cfr13I	GGNCC	2 cut(s)	12, 435
Cfr42I	CCGCGG	3 cut(s)	177, 215, 594
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	127, 448, 454, 571
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	8
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
EciI	GGCGGA	4 cut(s)	194, 267, 381, 556
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	302, 563
Eco47I	GGWCC	2 cut(s)	12, 435
Eco53kI	GAGCTC	1 cut(s)	300
Eco88I	CYCGRG	3 cut(s)	56, 134, 417
EcoICRI	GAGCTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	536
EcoT38I	GRGCYC	2 cut(s)	302, 563
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	130, 451, 457, 574
FaiI	YATR	4 cut(s)	128, 449, 455, 572
FaqI	GGGAC	2 cut(s)	39, 421
FatI	CATG	4 cut(s)	126, 447, 453, 570
FauI	CCCGC	2 cut(s)	165, 498
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	2 cut(s)	302, 563
GlaI	GCGC	5 cut(s)	40, 161, 196, 508, 639
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	83, 388
HapII	CCGG	9 cut(s)	42, 358, 433, 472, 522, 613, 619, 632, 650
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	5 cut(s)	41, 162, 197, 509, 640
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	130, 451, 457, 574
Hin6I	GCGC	5 cut(s)	39, 160, 195, 507, 638
HinP1I	GCGC	5 cut(s)	39, 160, 195, 507, 638
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	7 cut(s)	59, 90, 110, 170, 243, 288, 500
HpaII	CCGG	9 cut(s)	42, 358, 433, 472, 522, 613, 619, 632, 650
HphI	GGTGA	2 cut(s)	334, 384
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	4 cut(s)	95, 287, 310, 499
Hpy188III	TCNNGA	4 cut(s)	56, 134, 376, 571
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	5 cut(s)	110, 337, 340, 346, 583
HpyCH4III	ACNGT	2 cut(s)	26, 396
HpyCH4IV	ACGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 378, 412, 590, 646
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	130, 451, 457, 574
HspAI	GCGC	5 cut(s)	39, 160, 195, 507, 638
KpnI	GGTACC	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	612
KroNI	GCCGGC	1 cut(s)	614
KspI	CCGCGG	3 cut(s)	177, 215, 594
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	8 cut(s)	120, 202, 297, 305, 310, 328, 378, 621
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	322, 390
MbiI	CCGCTC	3 cut(s)	31, 295, 313
MboII	GAAGA	4 cut(s)	415, 460, 478, 525
MhlI	GDGCHC	2 cut(s)	302, 563
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	4 cut(s)	68, 104, 179, 509
MmeI	TCCRAC	2 cut(s)	118, 477
MroNI	GCCGGC	1 cut(s)	612
MseI	TTAA	2 cut(s)	77, 660
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	4 cut(s)	176, 214, 493, 593
MspI	CCGG	9 cut(s)	42, 358, 433, 472, 522, 613, 619, 632, 650
MspR9I	CCNGG	2 cut(s)	538, 632
MvaI	CCWGG	1 cut(s)	538
MvnI	CGCG	9 cut(s)	39, 146, 160, 162, 176, 197, 214, 509, 593
MwoI	GCNNNNNNNGC	5 cut(s)	211, 378, 412, 590, 646
NaeI	GCCGGC	1 cut(s)	614
NciI	CCSGG	1 cut(s)	632
NgoMIV	GCCGGC	1 cut(s)	612
NlaIII	CATG	4 cut(s)	130, 451, 457, 574
NlaIV	GGNNCC	5 cut(s)	14, 330, 356, 437, 617
NmuCI	GTSAC	2 cut(s)	322, 390
PaeR7I	CTCGAG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	332, 344
PdiI	GCCGGC	1 cut(s)	614
PfeI	GAWTC	3 cut(s)	90, 243, 288
PflFI	GACNNNGTC	3 cut(s)	169, 340, 547
PleI	GAGTC	4 cut(s)	67, 104, 178, 508
PpsI	GAGTC	4 cut(s)	67, 104, 178, 508
PpuMI	RGGWCCY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	5 cut(s)	14, 330, 356, 437, 617
PspPI	GGNCC	2 cut(s)	12, 435
PspPPI	RGGWCCY	1 cut(s)	12
PsyI	GACNNNGTC	3 cut(s)	169, 340, 547
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	302
SacII	CCGCGG	3 cut(s)	177, 215, 594
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	77, 660
Sau96I	GGNCC	2 cut(s)	12, 435
SchI	GAGTC	4 cut(s)	68, 104, 179, 509
ScrFI	CCNGG	2 cut(s)	538, 632
SduI	GDGCHC	2 cut(s)	302, 563
SetI	ASST	6 cut(s)	14, 224, 302, 374, 578, 659
Sfr274I	CTCGAG	1 cut(s)	134
Sfr303I	CCGCGG	3 cut(s)	177, 215, 594
SgrAI	CRCCGGYG	1 cut(s)	521
SgrBI	CCGCGG	3 cut(s)	177, 215, 594
SinI	GGWCC	2 cut(s)	12, 435
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	134, 266
SmoI	CTYRAG	2 cut(s)	134, 266
Sse9I	AATT	1 cut(s)	226
SspI	AATATT	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	536, 630
TaaI	ACNGT	2 cut(s)	26, 396
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	4 cut(s)	105, 135, 291, 551
TasI	AATT	1 cut(s)	226
TauI	GCSGC	9 cut(s)	39, 86, 179, 214, 528, 531, 596, 599, 627
TfiI	GAWTC	3 cut(s)	90, 243, 288
Tru1I	TTAA	2 cut(s)	77, 660
Tru9I	TTAA	2 cut(s)	77, 660
TseFI	GTSAC	2 cut(s)	322, 390
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	322, 390
TspDTI	ATGAA	4 cut(s)	58, 464, 470, 559
TspGWI	ACGGA	4 cut(s)	41, 54, 182, 341
Tth111I	GACNNNGTC	3 cut(s)	169, 340, 547
VpaK11BI	GGWCC	2 cut(s)	12, 435
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.